Wall clock time and date at job start Sun Mar 29 2020 21:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47212 * 2 1 4 4 C 1.53002 * 109.47171 * 239.99899 * 2 1 3 5 5 C 1.52998 * 109.47075 * 174.99822 * 4 2 1 6 6 C 1.50701 * 109.47250 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99723 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00045 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99704 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00017 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47107 * 89.99669 * 10 8 6 12 12 H 1.48501 * 109.47078 * 209.99842 * 10 8 6 13 13 H 1.48504 * 109.47188 * 329.99584 * 10 8 6 14 14 N 1.46905 * 109.47077 * 119.99797 * 2 1 3 15 15 C 1.46898 * 110.99838 * 271.42459 * 14 2 1 16 16 C 1.52998 * 115.54828 * 159.56942 * 15 14 2 17 17 N 1.46900 * 109.46935 * 326.20424 * 16 15 14 18 18 C 1.52997 * 117.49819 * 13.85955 * 15 14 2 19 19 C 1.53003 * 117.49764 * 305.23315 * 15 14 2 20 20 H 1.08994 * 109.47428 * 294.56869 * 1 2 3 21 21 H 1.09000 * 109.47207 * 174.56934 * 1 2 3 22 22 H 1.09001 * 109.47110 * 54.57300 * 1 2 3 23 23 H 1.09002 * 109.47249 * 294.99840 * 4 2 1 24 24 H 1.09003 * 109.47219 * 55.00221 * 4 2 1 25 25 H 1.09000 * 109.47561 * 300.00353 * 5 4 2 26 26 H 1.09003 * 109.46771 * 60.00124 * 5 4 2 27 27 H 0.96999 * 119.99699 * 180.02562 * 9 8 6 28 28 H 1.00898 * 110.99763 * 147.47191 * 14 2 1 29 29 H 1.08998 * 109.47418 * 86.20584 * 16 15 14 30 30 H 1.08996 * 109.47122 * 206.20765 * 16 15 14 31 31 H 1.00903 * 111.00175 * 183.97398 * 17 16 15 32 32 H 1.00902 * 111.00271 * 307.91693 * 17 16 15 33 33 H 1.08993 * 117.50520 * 359.97438 * 18 15 14 34 34 H 1.09004 * 117.49727 * 145.02680 * 18 15 14 35 35 H 1.09000 * 117.49787 * 214.97858 * 19 15 14 36 36 H 1.08996 * 117.50163 * 0.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0673 -1.3242 -2.5438 7 1 3.3688 -1.8047 -3.2129 8 6 5.4185 -1.3604 -2.8155 9 7 5.8570 -1.9813 -3.8887 10 14 6.6265 -0.5288 -1.6586 11 1 7.0621 -1.4958 -0.6191 12 1 7.8083 -0.0632 -2.4279 13 1 5.9694 0.6337 -1.0089 14 7 2.0197 -0.6925 1.1995 15 6 2.1630 0.2411 2.3246 16 6 2.1866 -0.3989 3.7141 17 7 1.3118 -1.5790 3.7246 18 6 1.5044 1.6155 2.1904 19 6 3.0265 1.4849 2.1049 20 1 -0.3634 0.4273 0.9346 21 1 -0.3633 -1.0230 -0.0973 22 1 -0.3633 0.5957 -0.8374 23 1 1.7517 -1.7716 -1.2056 24 1 1.6054 -0.2618 -2.1370 25 1 3.8532 0.4370 -1.3573 26 1 3.9994 -1.0728 -0.4259 27 1 6.8076 -2.0071 -4.0797 28 1 2.8890 -1.1692 1.0122 29 1 3.2054 -0.6997 3.9584 30 1 1.8337 0.3215 4.4520 31 1 1.2594 -1.9821 4.6481 32 1 0.3924 -1.3507 3.3771 33 1 0.9652 1.8273 1.2672 34 1 1.0877 2.0641 3.0923 35 1 3.6110 1.8475 2.9505 36 1 3.4879 1.6107 1.1255 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:49 Heat of formation + Delta-G solvation = -3.770805 kcal Electronic energy + Delta-G solvation = -14702.841617 eV Core-core repulsion = 12414.365177 eV Total energy + Delta-G solvation = -2288.476440 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.43229 -36.83046 -34.88401 -34.06894 -31.99015 -30.30382 -27.13497 -26.15909 -23.34159 -23.00244 -21.42051 -20.06854 -18.96109 -17.52451 -16.66432 -16.47338 -16.14760 -15.25562 -15.14697 -14.78886 -14.65448 -14.05874 -13.96563 -13.51644 -13.23947 -13.06817 -12.86256 -12.40430 -12.33143 -12.11222 -11.84215 -11.75546 -11.57774 -11.34610 -11.10509 -10.85725 -10.76828 -9.33072 -9.07489 -8.31933 -6.35768 1.32059 1.33362 1.44745 2.32609 2.78966 3.02916 3.17612 3.59074 3.90365 3.97088 4.05751 4.23738 4.29661 4.41444 4.61971 4.69923 4.71596 4.76743 4.87470 4.91511 4.98480 5.05442 5.09998 5.15206 5.18162 5.43480 5.51868 5.55010 5.64831 6.24201 6.26773 6.43692 6.55850 6.72275 6.82880 7.28581 8.85134 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032450 B = 0.008508 C = 0.007766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.658622 B = 3290.252455 C = 3604.626857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.080 3.920 3 H 0.044 0.956 4 C -0.100 4.100 5 C -0.004 4.004 6 C -0.532 4.532 7 H 0.031 0.969 8 C 0.005 3.995 9 N -0.951 5.951 10 Si 0.952 3.048 11 H -0.265 1.265 12 H -0.283 1.283 13 H -0.251 1.251 14 N -0.632 5.632 15 C 0.046 3.954 16 C 0.116 3.884 17 N -0.841 5.841 18 C -0.170 4.170 19 C -0.227 4.227 20 H 0.067 0.933 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.011 0.989 26 H 0.016 0.984 27 H 0.266 0.734 28 H 0.339 0.661 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.344 0.656 32 H 0.346 0.654 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.164 7.725 17.358 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.029 4.029 3 H 0.062 0.938 4 C -0.138 4.138 5 C -0.042 4.042 6 C -0.570 4.570 7 H 0.049 0.951 8 C -0.192 4.192 9 N -0.591 5.591 10 Si 0.775 3.225 11 H -0.190 1.190 12 H -0.209 1.209 13 H -0.174 1.174 14 N -0.264 5.264 15 C -0.047 4.047 16 C -0.015 4.015 17 N -0.372 5.372 18 C -0.207 4.207 19 C -0.267 4.267 20 H 0.086 0.914 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.029 0.971 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.160 0.840 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.125 7.120 16.929 20.507 hybrid contribution 1.145 1.053 -0.011 1.556 sum -7.980 8.173 16.918 20.413 Atomic orbital electron populations 1.21779 0.93311 1.01964 1.01642 1.21679 0.96535 0.95841 0.88860 0.93791 1.21560 0.95518 0.99991 0.96757 1.19479 0.94499 0.95370 0.94818 1.21502 0.92693 1.34223 1.08627 0.95111 1.26022 1.00642 0.95665 0.96892 1.70070 1.15287 1.45223 1.28549 0.85637 0.77993 0.79900 0.78962 1.19027 1.20892 1.17441 1.60292 1.34875 1.27179 1.04012 1.21953 1.03439 0.85745 0.93572 1.21119 0.97902 0.91386 0.91138 1.58364 1.17389 1.31171 1.30313 1.23555 0.94694 0.98060 1.04435 1.23573 0.94674 1.05618 1.02875 0.91409 0.92793 0.92342 0.93070 0.92731 0.97095 0.96563 0.92487 0.83998 0.91678 0.93434 0.84228 0.84067 0.88153 0.86671 0.87323 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 8.83 71.98 0.64 -2.74 16 2 C 0.08 2.54 2.04 44.91 0.09 2.64 16 3 H 0.04 1.41 5.02 -2.38 -0.01 1.40 16 4 C -0.10 -4.04 4.72 30.59 0.14 -3.90 16 5 C 0.00 -0.20 3.88 29.85 0.12 -0.08 16 6 C -0.53 -31.66 9.66 25.60 0.25 -31.42 16 7 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 8 C 0.00 0.27 5.47 84.66 0.46 0.73 16 9 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 10 Si 0.95 45.48 27.47 68.60 1.88 47.36 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 14 N -0.63 -19.44 6.01 -448.28 -2.70 -22.14 16 15 C 0.05 1.14 2.87 3.53 0.01 1.15 16 16 C 0.12 2.41 7.03 86.30 0.61 3.02 16 17 N -0.84 -17.37 9.20 -186.73 -1.72 -19.09 16 18 C -0.17 -3.66 8.46 30.60 0.26 -3.40 16 19 C -0.23 -5.67 9.59 30.60 0.29 -5.38 16 20 H 0.07 1.54 6.63 -2.39 -0.02 1.52 16 21 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 22 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 25 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 26 H 0.02 0.76 5.87 -2.39 -0.01 0.74 16 27 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 28 H 0.34 12.12 6.54 -89.70 -0.59 11.53 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 0.78 7.90 -2.39 -0.02 0.76 16 31 H 0.34 5.47 9.08 -89.69 -0.81 4.66 16 32 H 0.35 6.96 8.94 -89.69 -0.80 6.16 16 33 H 0.10 2.28 4.93 -2.39 -0.01 2.27 16 34 H 0.12 1.91 8.05 -2.38 -0.02 1.89 16 35 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.07 2.21 7.40 -2.39 -0.02 2.19 16 Total: -1.00 -66.28 282.64 -0.54 -66.82 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -1.18 Total: 27.09 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 2.87 Total: -39.38 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -4.11 Total: -101.90 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.36 kcal Total: -66.28 -0.54 -66.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.050 kcal (2) G-P(sol) polarization free energy of solvation -66.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds