Wall clock time and date at job start Sun Mar 29 2020 21:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47025 * 2 1 4 4 C 1.52998 * 109.47026 * 240.00263 * 2 1 3 5 5 C 1.53006 * 109.47011 * 174.32365 * 4 2 1 6 6 C 1.50703 * 109.46752 * 184.67316 * 5 4 2 7 7 H 1.08000 * 120.00333 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99731 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00051 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00269 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47261 * 89.99697 * 10 8 6 12 12 H 1.48502 * 109.47435 * 209.99916 * 10 8 6 13 13 H 1.48506 * 109.46882 * 329.99917 * 10 8 6 14 14 N 1.46902 * 109.47116 * 120.00264 * 2 1 3 15 15 C 1.47478 * 110.99840 * 299.96177 * 14 2 1 16 16 C 1.53510 * 88.00051 * 221.27065 * 15 14 2 17 17 C 1.52997 * 114.17452 * 139.70392 * 16 15 14 18 18 N 1.46902 * 114.17071 * 272.41112 * 16 15 14 19 19 C 1.47485 * 110.99671 * 203.99664 * 14 2 1 20 20 H 1.08997 * 109.47025 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46896 * 300.00017 * 1 2 3 22 22 H 1.08998 * 109.47144 * 59.99790 * 1 2 3 23 23 H 1.08999 * 109.47177 * 294.32154 * 4 2 1 24 24 H 1.08998 * 109.47335 * 54.32032 * 4 2 1 25 25 H 1.08997 * 109.46781 * 304.67015 * 5 4 2 26 26 H 1.08998 * 109.47236 * 64.67243 * 5 4 2 27 27 H 0.97007 * 119.99815 * 180.02562 * 9 8 6 28 28 H 1.08996 * 113.48027 * 336.07178 * 15 14 2 29 29 H 1.09000 * 113.47264 * 106.46972 * 15 14 2 30 30 H 1.09003 * 109.46672 * 59.99927 * 17 16 15 31 31 H 1.08998 * 109.47450 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.47192 * 300.00184 * 17 16 15 33 33 H 1.00901 * 111.00116 * 179.97438 * 18 16 15 34 34 H 1.00899 * 110.99980 * 303.95417 * 18 16 15 35 35 H 1.09000 * 113.47311 * 253.46696 * 19 14 2 36 36 H 1.08996 * 113.47835 * 23.87579 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5634 -0.5988 -1.3226 6 6 4.0548 -1.2088 -2.6101 7 1 3.3511 -1.6410 -3.3061 8 6 5.4028 -1.2152 -2.8993 9 7 5.8318 -1.7480 -4.0226 10 14 6.6201 -0.4684 -1.6952 11 1 7.0734 -1.5105 -0.7392 12 1 7.7901 0.0631 -2.4395 13 1 5.9645 0.6359 -0.9495 14 7 2.0197 -0.6926 1.1994 15 6 1.5475 -0.0233 2.4259 16 6 2.9447 -0.2469 3.0213 17 6 3.4761 0.9356 3.8337 18 7 3.1102 -1.5404 3.6979 19 6 3.3818 -0.2471 1.5478 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.7620 -1.7740 -1.1999 24 1 1.5960 -0.2694 -2.1363 25 1 3.8453 0.4535 -1.2883 26 1 4.0111 -1.1227 -0.4782 27 1 6.7803 -1.7528 -4.2259 28 1 1.3011 1.0283 2.2794 29 1 0.7614 -0.5719 2.9447 30 1 2.8018 1.1367 4.6662 31 1 4.4675 0.6960 4.2183 32 1 3.5377 1.8168 3.1951 33 1 4.0431 -1.6371 4.0698 34 1 2.4177 -1.6611 4.4216 35 1 4.1510 -0.9859 1.3230 36 1 3.6253 0.7444 1.1661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492692.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:34 Heat of formation + Delta-G solvation = 25.070616 kcal Electronic energy + Delta-G solvation = -14842.147230 eV Core-core repulsion = 12554.921448 eV Total energy + Delta-G solvation = -2287.225782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.38300 -35.49229 -33.00949 -31.63867 -29.93481 -28.80157 -26.09803 -24.90890 -24.16049 -20.84312 -19.68550 -18.60627 -16.67086 -15.97243 -15.73620 -15.28231 -14.33843 -13.89426 -13.85716 -13.05325 -12.77606 -12.67202 -12.58081 -12.39184 -12.14905 -11.98877 -11.41339 -11.17715 -11.09856 -10.74191 -10.41696 -10.11849 -9.78929 -9.62080 -9.34615 -9.01432 -8.67512 -8.46198 -8.31151 -5.96377 -3.92468 3.35124 3.41332 3.44183 4.18341 4.33791 4.51673 4.59639 4.88152 5.22445 5.31242 5.38077 5.41226 5.51815 5.52809 5.65476 5.76643 5.80782 5.92295 5.98843 6.06252 6.23873 6.25553 6.38877 6.56336 6.69534 6.86035 7.08791 7.21886 7.42933 7.44234 7.47776 7.68042 7.90373 8.64221 9.09872 9.67025 11.17577 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029183 B = 0.009831 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.236183 B = 2847.577317 C = 3520.966174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 H 0.041 0.959 4 C -0.090 4.090 5 C -0.017 4.017 6 C -0.515 4.515 7 H 0.070 0.930 8 C 0.064 3.936 9 N -0.907 5.907 10 Si 0.879 3.121 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.267 1.267 14 N -0.440 5.440 15 C 0.008 3.992 16 C 0.073 3.927 17 C -0.169 4.169 18 N -0.809 5.809 19 C 0.020 3.980 20 H 0.061 0.939 21 H 0.045 0.955 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.006 0.994 26 H 0.023 0.977 27 H 0.261 0.739 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.341 0.659 34 H 0.339 0.661 35 H 0.092 0.908 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 5.961 16.240 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 H 0.059 0.941 4 C -0.128 4.128 5 C -0.054 4.054 6 C -0.553 4.553 7 H 0.088 0.912 8 C -0.136 4.136 9 N -0.547 5.547 10 Si 0.707 3.293 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.192 1.192 14 N -0.162 5.162 15 C -0.122 4.122 16 C -0.021 4.021 17 C -0.229 4.229 18 N -0.338 5.338 19 C -0.110 4.110 20 H 0.080 0.920 21 H 0.064 0.936 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.110 0.890 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.135 4.885 15.237 17.520 hybrid contribution 1.108 1.871 1.348 2.558 sum -6.027 6.756 16.584 18.895 Atomic orbital electron populations 1.21830 0.95175 1.02217 1.00791 1.22461 0.94936 0.96083 0.93511 0.94147 1.21432 0.98277 0.99812 0.93304 1.19723 0.92045 0.95949 0.97679 1.21206 0.93023 1.37589 1.03448 0.91198 1.25031 0.98412 0.95054 0.95126 1.69928 1.14769 1.45977 1.23998 0.86788 0.80829 0.80120 0.81604 1.20209 1.21600 1.19170 1.69040 1.03518 1.43852 0.99779 1.23863 0.96314 0.98071 0.93920 1.22156 0.97284 0.88289 0.94331 1.22374 1.01023 0.99009 1.00481 1.58460 1.08341 1.31133 1.35871 1.24026 0.94719 1.00276 0.91971 0.91977 0.93626 0.92378 0.92011 0.92643 0.97575 0.95897 0.92913 0.91694 0.90218 0.92572 0.92362 0.91865 0.84571 0.84754 0.88970 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.09 37.16 0.34 -1.70 16 2 C 0.04 0.67 1.98 -67.71 -0.13 0.54 16 3 H 0.04 0.70 7.52 -51.93 -0.39 0.31 16 4 C -0.09 -1.91 4.82 -26.73 -0.13 -2.04 16 5 C -0.02 -0.42 3.09 -27.88 -0.09 -0.50 16 6 C -0.51 -15.29 9.66 -34.44 -0.33 -15.62 16 7 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 8 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.86 13.96 55.43 0.77 -28.09 16 10 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 14 N -0.44 -7.44 6.12 -236.35 -1.45 -8.88 16 15 C 0.01 0.11 5.83 -7.55 -0.04 0.06 16 16 C 0.07 0.94 1.81 -131.24 -0.24 0.70 16 17 C -0.17 -1.74 9.50 37.16 0.35 -1.38 16 18 N -0.81 -9.69 9.44 1.07 0.01 -9.68 16 19 C 0.02 0.33 5.00 -7.45 -0.04 0.29 16 20 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 21 H 0.04 0.57 7.03 -51.93 -0.37 0.20 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 24 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.01 0.15 7.20 -51.93 -0.37 -0.22 16 26 H 0.02 0.57 4.90 -51.93 -0.25 0.32 16 27 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 28 H 0.06 0.79 7.62 -51.93 -0.40 0.40 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 33 H 0.34 3.60 8.97 -39.29 -0.35 3.24 16 34 H 0.34 3.33 9.07 -39.29 -0.36 2.97 16 35 H 0.09 1.77 6.86 -51.93 -0.36 1.42 16 36 H 0.07 1.14 7.33 -51.93 -0.38 0.76 16 LS Contribution 281.67 15.07 4.24 4.24 Total: -1.00 -32.17 281.67 -7.67 -39.84 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.18 Total: 2.69 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -0.41 Total: -17.83 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.66 Total: -46.66 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.17 -7.67 -39.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492692.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.911 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds