Wall clock time and date at job start Sun Mar 29 2020 21:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47025 * 2 1 4 4 C 1.52998 * 109.47026 * 240.00263 * 2 1 3 5 5 C 1.53006 * 109.47011 * 174.32365 * 4 2 1 6 6 C 1.50703 * 109.46752 * 184.67316 * 5 4 2 7 7 H 1.08000 * 120.00333 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99731 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00051 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00269 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47261 * 89.99697 * 10 8 6 12 12 H 1.48502 * 109.47435 * 209.99916 * 10 8 6 13 13 H 1.48506 * 109.46882 * 329.99917 * 10 8 6 14 14 N 1.46902 * 109.47116 * 120.00264 * 2 1 3 15 15 C 1.47478 * 110.99840 * 299.96177 * 14 2 1 16 16 C 1.53510 * 88.00051 * 221.27065 * 15 14 2 17 17 C 1.52997 * 114.17452 * 139.70392 * 16 15 14 18 18 N 1.46902 * 114.17071 * 272.41112 * 16 15 14 19 19 C 1.47485 * 110.99671 * 203.99664 * 14 2 1 20 20 H 1.08997 * 109.47025 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46896 * 300.00017 * 1 2 3 22 22 H 1.08998 * 109.47144 * 59.99790 * 1 2 3 23 23 H 1.08999 * 109.47177 * 294.32154 * 4 2 1 24 24 H 1.08998 * 109.47335 * 54.32032 * 4 2 1 25 25 H 1.08997 * 109.46781 * 304.67015 * 5 4 2 26 26 H 1.08998 * 109.47236 * 64.67243 * 5 4 2 27 27 H 0.97007 * 119.99815 * 180.02562 * 9 8 6 28 28 H 1.08996 * 113.48027 * 336.07178 * 15 14 2 29 29 H 1.09000 * 113.47264 * 106.46972 * 15 14 2 30 30 H 1.09003 * 109.46672 * 59.99927 * 17 16 15 31 31 H 1.08998 * 109.47450 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.47192 * 300.00184 * 17 16 15 33 33 H 1.00901 * 111.00116 * 179.97438 * 18 16 15 34 34 H 1.00899 * 110.99980 * 303.95417 * 18 16 15 35 35 H 1.09000 * 113.47311 * 253.46696 * 19 14 2 36 36 H 1.08996 * 113.47835 * 23.87579 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5634 -0.5988 -1.3226 6 6 4.0548 -1.2088 -2.6101 7 1 3.3511 -1.6410 -3.3061 8 6 5.4028 -1.2152 -2.8993 9 7 5.8318 -1.7480 -4.0226 10 14 6.6201 -0.4684 -1.6952 11 1 7.0734 -1.5105 -0.7392 12 1 7.7901 0.0631 -2.4395 13 1 5.9645 0.6359 -0.9495 14 7 2.0197 -0.6926 1.1994 15 6 1.5475 -0.0233 2.4259 16 6 2.9447 -0.2469 3.0213 17 6 3.4761 0.9356 3.8337 18 7 3.1102 -1.5404 3.6979 19 6 3.3818 -0.2471 1.5478 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.7620 -1.7740 -1.1999 24 1 1.5960 -0.2694 -2.1363 25 1 3.8453 0.4535 -1.2883 26 1 4.0111 -1.1227 -0.4782 27 1 6.7803 -1.7528 -4.2259 28 1 1.3011 1.0283 2.2794 29 1 0.7614 -0.5719 2.9447 30 1 2.8018 1.1367 4.6662 31 1 4.4675 0.6960 4.2183 32 1 3.5377 1.8168 3.1951 33 1 4.0431 -1.6371 4.0698 34 1 2.4177 -1.6611 4.4216 35 1 4.1510 -0.9859 1.3230 36 1 3.6253 0.7444 1.1661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492692.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:34 Heat of formation + Delta-G solvation = -0.866585 kcal Electronic energy + Delta-G solvation = -14843.271951 eV Core-core repulsion = 12554.921448 eV Total energy + Delta-G solvation = -2288.350504 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.54532 -36.90697 -34.98648 -33.15750 -31.57056 -29.67733 -27.65098 -26.28605 -25.49218 -22.73011 -21.09085 -19.72798 -18.87687 -17.20726 -16.84484 -16.39833 -16.34681 -15.27654 -15.13107 -14.63404 -14.57444 -13.81674 -13.67313 -13.58853 -13.36962 -13.23312 -13.06045 -12.90629 -12.54956 -12.20461 -11.96291 -11.69369 -11.47042 -11.31055 -11.21731 -10.90981 -10.72632 -9.73489 -9.42547 -8.30725 -6.33751 1.31397 1.34020 1.45471 2.34294 3.04433 3.07924 3.31984 3.62872 3.83997 4.04991 4.08377 4.30808 4.45890 4.49339 4.60018 4.70948 4.74526 4.81736 4.85905 4.89250 4.91845 5.01024 5.09943 5.17345 5.20981 5.25578 5.52402 5.56936 5.63061 5.70117 6.24365 6.28792 6.42976 6.68992 6.73821 7.30100 8.86616 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029183 B = 0.009831 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.236183 B = 2847.577317 C = 3520.966174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.045 3.955 3 H 0.045 0.955 4 C -0.086 4.086 5 C -0.005 4.005 6 C -0.533 4.533 7 H 0.027 0.973 8 C 0.002 3.998 9 N -0.953 5.953 10 Si 0.952 3.048 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.246 1.246 14 N -0.466 5.466 15 C 0.015 3.985 16 C 0.089 3.911 17 C -0.162 4.162 18 N -0.824 5.824 19 C 0.006 3.994 20 H 0.054 0.946 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.010 0.990 26 H 0.024 0.976 27 H 0.266 0.734 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.349 0.651 34 H 0.353 0.647 35 H 0.059 0.941 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.264 7.595 19.172 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.063 4.063 3 H 0.063 0.937 4 C -0.124 4.124 5 C -0.042 4.042 6 C -0.571 4.571 7 H 0.045 0.955 8 C -0.194 4.194 9 N -0.594 5.594 10 Si 0.775 3.225 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.169 1.169 14 N -0.188 5.188 15 C -0.114 4.114 16 C -0.005 4.005 17 C -0.222 4.222 18 N -0.356 5.356 19 C -0.124 4.124 20 H 0.073 0.927 21 H 0.090 0.910 22 H 0.083 0.917 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.077 0.923 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.458 6.519 18.188 20.711 hybrid contribution 1.159 1.268 0.349 1.753 sum -6.299 7.787 18.537 21.070 Atomic orbital electron populations 1.21768 0.92733 1.02312 1.02471 1.22320 0.96835 0.95369 0.91823 0.93740 1.21323 0.95942 0.99351 0.95790 1.19593 0.94483 0.95324 0.94849 1.21586 0.92852 1.37830 1.04840 0.95508 1.26049 1.00704 0.95481 0.97209 1.70085 1.15576 1.47503 1.26274 0.85638 0.77926 0.79930 0.79047 1.19218 1.20737 1.16899 1.68985 1.04017 1.44948 1.00876 1.23913 0.96888 0.98830 0.91806 1.22015 0.96345 0.89597 0.92553 1.22309 1.01751 0.97536 1.00631 1.58381 1.09421 1.31054 1.36737 1.24061 0.93896 0.98944 0.95497 0.92676 0.90991 0.91660 0.93876 0.93207 0.97179 0.95759 0.92545 0.90028 0.89092 0.90444 0.91803 0.91989 0.83721 0.83160 0.92258 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.09 71.98 0.65 -2.90 16 2 C 0.05 1.50 1.98 44.91 0.09 1.59 16 3 H 0.04 1.44 7.52 -2.39 -0.02 1.42 16 4 C -0.09 -3.69 4.82 30.60 0.15 -3.54 16 5 C -0.01 -0.27 3.09 29.85 0.09 -0.17 16 6 C -0.53 -32.79 9.66 25.60 0.25 -32.54 16 7 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 8 C 0.00 0.11 5.47 84.65 0.46 0.57 16 9 N -0.95 -62.36 13.96 21.45 0.30 -62.06 16 10 Si 0.95 46.29 27.47 68.60 1.88 48.17 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 13 H -0.25 -11.00 6.54 99.48 0.65 -10.34 16 14 N -0.47 -14.97 6.12 -901.66 -5.52 -20.48 16 15 C 0.01 0.34 5.83 83.57 0.49 0.82 16 16 C 0.09 2.02 1.81 4.03 0.01 2.03 16 17 C -0.16 -2.74 9.50 71.98 0.68 -2.06 16 18 N -0.82 -17.72 9.44 -150.52 -1.42 -19.14 16 19 C 0.01 0.19 5.00 83.63 0.42 0.60 16 20 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 21 H 0.07 1.52 7.03 -2.39 -0.02 1.50 16 22 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 26 H 0.02 1.22 4.90 -2.39 -0.01 1.20 16 27 H 0.27 16.13 8.31 -92.70 -0.77 15.36 16 28 H 0.08 1.64 7.62 -2.39 -0.02 1.62 16 29 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.02 8.12 -2.39 -0.02 1.00 16 32 H 0.06 1.08 7.90 -2.39 -0.02 1.06 16 33 H 0.35 6.55 8.97 -89.69 -0.80 5.74 16 34 H 0.35 5.86 9.07 -89.69 -0.81 5.05 16 35 H 0.06 2.25 6.86 -2.39 -0.02 2.24 16 36 H 0.06 2.06 7.33 -2.39 -0.02 2.05 16 Total: -1.00 -71.25 281.67 -2.08 -73.33 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -0.62 Total: 15.78 kcal Atomic # 6 Polarization: -38.89 SS G_CDS: 3.29 Total: -35.60 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -6.64 Total: -101.68 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.88 Total: 48.17 kcal Total: -71.25 -2.08 -73.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492692.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.465 kcal (2) G-P(sol) polarization free energy of solvation -71.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds