Wall clock time and date at job start Sun Mar 29 2020 21:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47138 * 2 1 4 4 C 1.52996 * 109.46876 * 120.00030 * 2 1 3 5 5 C 1.53000 * 109.47063 * 184.99827 * 4 2 1 6 6 C 1.50699 * 109.47152 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99957 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00054 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99788 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99840 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47436 * 90.00103 * 10 8 6 12 12 H 1.48507 * 109.47020 * 210.00263 * 10 8 6 13 13 H 1.48503 * 109.46785 * 329.99985 * 10 8 6 14 14 N 1.46896 * 109.47025 * 239.99991 * 2 1 3 15 15 C 1.47963 * 111.00266 * 61.00199 * 14 2 1 16 16 C 1.53926 * 86.18141 * 222.41952 * 15 14 2 17 17 C 1.53005 * 113.73355 * 138.08088 * 16 15 14 18 18 N 1.46906 * 113.73354 * 269.25512 * 16 15 14 19 19 C 1.47963 * 110.99916 * 321.64589 * 14 2 1 20 20 H 1.09004 * 109.46976 * 69.88287 * 1 2 3 21 21 H 1.08998 * 109.47208 * 189.88781 * 1 2 3 22 22 H 1.08999 * 109.46548 * 309.88826 * 1 2 3 23 23 H 1.09008 * 109.47232 * 304.99829 * 4 2 1 24 24 H 1.09000 * 109.47351 * 65.00146 * 4 2 1 25 25 H 1.09000 * 109.47032 * 299.99778 * 5 4 2 26 26 H 1.09000 * 109.46777 * 59.99967 * 5 4 2 27 27 H 0.97007 * 119.99398 * 179.97438 * 9 8 6 28 28 H 1.09000 * 113.75573 * 108.09853 * 15 14 2 29 29 H 1.09000 * 113.75439 * 336.74054 * 15 14 2 30 30 H 1.09004 * 109.46812 * 59.99816 * 17 16 15 31 31 H 1.09000 * 109.47314 * 179.97438 * 17 16 15 32 32 H 1.08997 * 109.47323 * 299.99621 * 17 16 15 33 33 H 1.00904 * 111.00325 * 178.10380 * 18 16 15 34 34 H 1.00896 * 110.99822 * 302.05876 * 18 16 15 35 35 H 1.09001 * 113.76162 * 23.26452 * 19 14 2 36 36 H 1.09003 * 113.75655 * 251.89826 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3243 2.5438 7 1 3.3687 -1.8047 3.2130 8 6 5.4185 -1.3606 2.8156 9 7 5.8567 -1.9806 3.8894 10 14 6.6265 -0.5291 1.6586 11 1 6.8312 0.8786 2.0847 12 1 7.9238 -1.2510 1.6951 13 1 6.0849 -0.5541 0.2761 14 7 2.0197 -0.6925 -1.1994 15 6 1.5651 -0.0078 -2.4298 16 6 1.2808 -1.4151 -2.9847 17 6 -0.0361 -1.5183 -3.7567 18 7 2.4155 -2.0064 -3.7065 19 6 1.1751 -1.8653 -1.5164 20 1 -0.3633 0.3535 -0.9650 21 1 -0.3633 -1.0124 0.1765 22 1 -0.3632 0.6590 0.7885 23 1 1.6054 -0.2617 2.1370 24 1 1.7517 -1.7715 1.2056 25 1 3.9994 -1.0729 0.4260 26 1 3.8532 0.4369 1.3573 27 1 6.8075 -2.0064 4.0804 28 1 2.3594 0.5202 -2.9575 29 1 0.6700 0.5982 -2.2898 30 1 -0.0147 -0.8337 -4.6047 31 1 -0.1671 -2.5386 -4.1171 32 1 -0.8645 -1.2559 -3.0988 33 1 2.1955 -2.9382 -4.0250 34 1 2.7001 -1.4191 -4.4760 35 1 0.1659 -1.8026 -1.1095 36 1 1.6579 -2.8215 -1.3145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492693.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:37 Heat of formation + Delta-G solvation = 31.366016 kcal Electronic energy + Delta-G solvation = -14726.382514 eV Core-core repulsion = 12439.429721 eV Total energy + Delta-G solvation = -2286.952793 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.47377 -35.44964 -33.00842 -31.48877 -29.45518 -28.89950 -26.11822 -25.66878 -24.11673 -20.70714 -19.36901 -18.63488 -16.52971 -16.10114 -15.73788 -15.50300 -14.20619 -13.99057 -13.62869 -13.40859 -13.14949 -12.84256 -12.54528 -12.43075 -11.95061 -11.67139 -11.41447 -11.20921 -10.93722 -10.54122 -10.41044 -10.24141 -9.73722 -9.57900 -9.37959 -8.94222 -8.67574 -8.37042 -8.15036 -5.88521 -3.84304 3.45171 3.51913 3.63777 4.11279 4.33745 4.53711 4.63128 4.81258 5.16679 5.19677 5.34809 5.42704 5.47420 5.47643 5.55530 5.63957 5.74815 5.84892 5.92924 6.00539 6.16820 6.21968 6.30940 6.60680 6.63748 6.95361 7.15296 7.20745 7.42563 7.50746 7.58116 7.81587 8.00933 8.71670 9.17290 9.76172 11.25292 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037717 B = 0.007947 C = 0.007195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.183213 B = 3522.568940 C = 3890.466510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.038 3.962 3 H 0.076 0.924 4 C -0.086 4.086 5 C -0.007 4.007 6 C -0.516 4.516 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.911 5.911 10 Si 0.878 3.122 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.259 1.259 14 N -0.441 5.441 15 C 0.003 3.997 16 C 0.082 3.918 17 C -0.173 4.173 18 N -0.811 5.811 19 C 0.006 3.994 20 H 0.051 0.949 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.033 0.967 26 H 0.003 0.997 27 H 0.260 0.740 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.340 0.660 34 H 0.340 0.660 35 H 0.080 0.920 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.327 2.888 -15.947 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.070 4.070 3 H 0.094 0.906 4 C -0.124 4.124 5 C -0.045 4.045 6 C -0.554 4.554 7 H 0.085 0.915 8 C -0.136 4.136 9 N -0.551 5.551 10 Si 0.706 3.294 11 H -0.207 1.207 12 H -0.217 1.217 13 H -0.183 1.183 14 N -0.163 5.163 15 C -0.126 4.126 16 C -0.012 4.012 17 C -0.233 4.233 18 N -0.341 5.341 19 C -0.123 4.123 20 H 0.070 0.930 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.021 0.979 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.097 0.903 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.043 2.845 -15.005 18.846 hybrid contribution -0.818 0.570 -1.288 1.628 sum -11.861 3.414 -16.293 20.440 Atomic orbital electron populations 1.22548 0.98399 1.02059 1.01343 1.22374 0.91797 0.99230 0.93642 0.90564 1.21393 0.99115 0.98743 0.93174 1.19485 0.91369 0.95931 0.97698 1.21251 0.92818 1.33898 1.07403 0.91478 1.25016 0.98446 0.95101 0.95052 1.69937 1.14377 1.44204 1.26544 0.86778 0.80354 0.79360 0.82932 1.20682 1.21708 1.18269 1.68846 1.44108 1.03566 0.99746 1.24127 0.99706 0.95008 0.93805 1.22364 0.88847 0.95932 0.94045 1.22472 0.98395 1.01696 1.00728 1.58511 1.37070 1.06191 1.32320 1.24233 0.97611 0.97830 0.92599 0.93010 0.91996 0.92129 0.92945 0.92995 0.94912 0.97865 0.93021 0.89790 0.91094 0.92629 0.92491 0.91994 0.84672 0.84691 0.90251 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 7.87 37.16 0.29 -2.15 16 2 C 0.04 0.65 2.43 -67.71 -0.16 0.49 16 3 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 4 C -0.09 -1.81 4.71 -26.73 -0.13 -1.94 16 5 C -0.01 -0.19 3.93 -27.88 -0.11 -0.30 16 6 C -0.52 -15.60 9.66 -34.44 -0.33 -15.93 16 7 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 8 C 0.06 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.91 -29.46 13.96 55.43 0.77 -28.69 16 10 Si 0.88 23.27 27.47 -169.99 -4.67 18.60 16 11 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 13 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 14 N -0.44 -7.40 5.65 -230.12 -1.30 -8.70 16 15 C 0.00 0.04 7.12 -2.77 -0.02 0.02 16 16 C 0.08 0.96 1.69 -133.30 -0.23 0.74 16 17 C -0.17 -1.54 9.43 37.16 0.35 -1.19 16 18 N -0.81 -9.48 9.38 -0.21 0.00 -9.48 16 19 C 0.01 0.09 6.69 -2.77 -0.02 0.07 16 20 H 0.05 0.59 5.88 -51.93 -0.31 0.29 16 21 H 0.06 0.80 6.35 -51.93 -0.33 0.47 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 24 H 0.05 1.11 7.86 -51.93 -0.41 0.70 16 25 H 0.03 0.88 6.81 -51.93 -0.35 0.53 16 26 H 0.00 0.08 7.57 -51.93 -0.39 -0.31 16 27 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 0.82 5.86 -51.93 -0.30 0.52 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.54 7.94 -51.93 -0.41 0.13 16 33 H 0.34 3.35 9.01 -39.29 -0.35 3.00 16 34 H 0.34 3.37 9.08 -39.29 -0.36 3.01 16 35 H 0.08 1.02 4.82 -51.93 -0.25 0.77 16 36 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 280.67 15.07 4.23 4.23 Total: -1.00 -33.34 280.67 -7.43 -40.77 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.01 Total: 1.59 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -0.45 Total: -18.32 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.53 Total: -46.87 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.67 Total: 18.60 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.34 -7.43 -40.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492693.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.137 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds