Wall clock time and date at job start Sun Mar 29 2020 21:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47138 * 2 1 4 4 C 1.52996 * 109.46876 * 120.00030 * 2 1 3 5 5 C 1.53000 * 109.47063 * 184.99827 * 4 2 1 6 6 C 1.50699 * 109.47152 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99957 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00054 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99788 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99840 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47436 * 90.00103 * 10 8 6 12 12 H 1.48507 * 109.47020 * 210.00263 * 10 8 6 13 13 H 1.48503 * 109.46785 * 329.99985 * 10 8 6 14 14 N 1.46896 * 109.47025 * 239.99991 * 2 1 3 15 15 C 1.47963 * 111.00266 * 61.00199 * 14 2 1 16 16 C 1.53926 * 86.18141 * 222.41952 * 15 14 2 17 17 C 1.53005 * 113.73355 * 138.08088 * 16 15 14 18 18 N 1.46906 * 113.73354 * 269.25512 * 16 15 14 19 19 C 1.47963 * 110.99916 * 321.64589 * 14 2 1 20 20 H 1.09004 * 109.46976 * 69.88287 * 1 2 3 21 21 H 1.08998 * 109.47208 * 189.88781 * 1 2 3 22 22 H 1.08999 * 109.46548 * 309.88826 * 1 2 3 23 23 H 1.09008 * 109.47232 * 304.99829 * 4 2 1 24 24 H 1.09000 * 109.47351 * 65.00146 * 4 2 1 25 25 H 1.09000 * 109.47032 * 299.99778 * 5 4 2 26 26 H 1.09000 * 109.46777 * 59.99967 * 5 4 2 27 27 H 0.97007 * 119.99398 * 179.97438 * 9 8 6 28 28 H 1.09000 * 113.75573 * 108.09853 * 15 14 2 29 29 H 1.09000 * 113.75439 * 336.74054 * 15 14 2 30 30 H 1.09004 * 109.46812 * 59.99816 * 17 16 15 31 31 H 1.09000 * 109.47314 * 179.97438 * 17 16 15 32 32 H 1.08997 * 109.47323 * 299.99621 * 17 16 15 33 33 H 1.00904 * 111.00325 * 178.10380 * 18 16 15 34 34 H 1.00896 * 110.99822 * 302.05876 * 18 16 15 35 35 H 1.09001 * 113.76162 * 23.26452 * 19 14 2 36 36 H 1.09003 * 113.75655 * 251.89826 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3243 2.5438 7 1 3.3687 -1.8047 3.2130 8 6 5.4185 -1.3606 2.8156 9 7 5.8567 -1.9806 3.8894 10 14 6.6265 -0.5291 1.6586 11 1 6.8312 0.8786 2.0847 12 1 7.9238 -1.2510 1.6951 13 1 6.0849 -0.5541 0.2761 14 7 2.0197 -0.6925 -1.1994 15 6 1.5651 -0.0078 -2.4298 16 6 1.2808 -1.4151 -2.9847 17 6 -0.0361 -1.5183 -3.7567 18 7 2.4155 -2.0064 -3.7065 19 6 1.1751 -1.8653 -1.5164 20 1 -0.3633 0.3535 -0.9650 21 1 -0.3633 -1.0124 0.1765 22 1 -0.3632 0.6590 0.7885 23 1 1.6054 -0.2617 2.1370 24 1 1.7517 -1.7715 1.2056 25 1 3.9994 -1.0729 0.4260 26 1 3.8532 0.4369 1.3573 27 1 6.8075 -2.0064 4.0804 28 1 2.3594 0.5202 -2.9575 29 1 0.6700 0.5982 -2.2898 30 1 -0.0147 -0.8337 -4.6047 31 1 -0.1671 -2.5386 -4.1171 32 1 -0.8645 -1.2559 -3.0988 33 1 2.1955 -2.9382 -4.0250 34 1 2.7001 -1.4191 -4.4760 35 1 0.1659 -1.8026 -1.1095 36 1 1.6579 -2.8215 -1.3145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492693.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:36 Heat of formation + Delta-G solvation = 4.924464 kcal Electronic energy + Delta-G solvation = -14727.529105 eV Core-core repulsion = 12439.429721 eV Total energy + Delta-G solvation = -2288.099385 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.56238 -36.81778 -34.98138 -33.13366 -31.02106 -29.70670 -27.30866 -27.17260 -25.49397 -22.63465 -20.72803 -19.67690 -18.81328 -17.19894 -16.76797 -16.56024 -16.31931 -15.33951 -14.80127 -14.64162 -14.53595 -14.44293 -13.75937 -13.57925 -13.36729 -13.18179 -12.87305 -12.61734 -12.36941 -11.99139 -11.82573 -11.65613 -11.46209 -11.38984 -11.20724 -11.05068 -10.73784 -9.58241 -9.27253 -8.28447 -6.30439 1.33712 1.37343 1.53383 2.38517 3.06503 3.08418 3.40902 3.65307 3.86432 3.93435 4.24030 4.29453 4.43942 4.49128 4.59888 4.67598 4.77405 4.83034 4.88274 4.90967 4.93664 5.03794 5.16116 5.20560 5.25756 5.36851 5.50381 5.66777 5.75522 5.77065 6.28093 6.32205 6.46125 6.67954 6.77428 7.34132 8.88666 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037717 B = 0.007947 C = 0.007195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.183213 B = 3522.568940 C = 3890.466510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.045 3.955 3 H 0.073 0.927 4 C -0.080 4.080 5 C 0.002 3.998 6 C -0.531 4.531 7 H 0.029 0.971 8 C 0.004 3.996 9 N -0.954 5.954 10 Si 0.951 3.049 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.253 1.253 14 N -0.483 5.483 15 C 0.007 3.993 16 C 0.095 3.905 17 C -0.164 4.164 18 N -0.831 5.831 19 C 0.000 4.000 20 H 0.077 0.923 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.021 0.979 26 H 0.005 0.995 27 H 0.265 0.735 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.349 0.651 34 H 0.350 0.650 35 H 0.096 0.904 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.246 4.189 -18.325 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.064 4.064 3 H 0.091 0.909 4 C -0.118 4.118 5 C -0.035 4.035 6 C -0.569 4.569 7 H 0.047 0.953 8 C -0.192 4.192 9 N -0.595 5.595 10 Si 0.775 3.225 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.177 1.177 14 N -0.205 5.205 15 C -0.122 4.122 16 C 0.001 3.999 17 C -0.224 4.224 18 N -0.363 5.363 19 C -0.129 4.129 20 H 0.096 0.904 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.024 0.976 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.114 0.886 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.980 4.148 -17.394 21.524 hybrid contribution -0.531 0.094 -0.468 0.714 sum -12.511 4.242 -17.862 22.217 Atomic orbital electron populations 1.22432 0.95249 1.02551 1.03131 1.22183 0.94284 0.98095 0.91877 0.90912 1.21262 0.95967 0.98768 0.95842 1.19343 0.94569 0.94915 0.94677 1.21623 0.92666 1.34055 1.08518 0.95296 1.25987 1.00618 0.95814 0.96817 1.70077 1.15184 1.45720 1.28530 0.85635 0.77637 0.78770 0.80485 1.19082 1.20808 1.17678 1.68766 1.45840 1.05096 1.00779 1.24193 1.00315 0.95801 0.91894 1.22222 0.90314 0.94428 0.92941 1.22375 0.96510 1.02677 1.00839 1.58458 1.37692 1.07113 1.33077 1.24300 0.97681 0.95895 0.94999 0.90414 0.91870 0.91398 0.93191 0.94240 0.96075 0.97624 0.92593 0.90200 0.88974 0.91211 0.91725 0.91297 0.83685 0.83545 0.88627 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.15 7.87 71.98 0.57 -3.58 16 2 C 0.04 1.44 2.43 44.92 0.11 1.55 16 3 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 4 C -0.08 -3.40 4.71 30.59 0.14 -3.26 16 5 C 0.00 0.12 3.93 29.85 0.12 0.24 16 6 C -0.53 -33.06 9.66 25.60 0.25 -32.81 16 7 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 8 C 0.00 0.23 5.47 84.66 0.46 0.70 16 9 N -0.95 -63.04 13.96 21.45 0.30 -62.74 16 10 Si 0.95 48.31 27.47 68.60 1.88 50.20 16 11 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.25 -12.53 6.54 99.48 0.65 -11.88 16 14 N -0.48 -15.53 5.65 -881.96 -4.98 -20.51 16 15 C 0.01 0.16 7.12 86.40 0.62 0.77 16 16 C 0.09 2.00 1.69 5.09 0.01 2.01 16 17 C -0.16 -2.34 9.43 71.98 0.68 -1.66 16 18 N -0.83 -17.96 9.38 -154.56 -1.45 -19.41 16 19 C 0.00 0.01 6.69 86.40 0.58 0.59 16 20 H 0.08 1.45 5.88 -2.38 -0.01 1.44 16 21 H 0.06 1.48 6.35 -2.39 -0.02 1.47 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.05 2.08 8.14 -2.38 -0.02 2.07 16 24 H 0.04 1.72 7.86 -2.39 -0.02 1.71 16 25 H 0.02 1.13 6.81 -2.39 -0.02 1.12 16 26 H 0.01 0.28 7.57 -2.39 -0.02 0.26 16 27 H 0.27 16.30 8.31 -92.70 -0.77 15.53 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.09 1.76 5.86 -2.39 -0.01 1.74 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.91 7.94 -2.39 -0.02 0.89 16 33 H 0.35 6.31 9.01 -89.69 -0.81 5.50 16 34 H 0.35 6.21 9.08 -89.70 -0.81 5.39 16 35 H 0.10 2.25 4.82 -2.39 -0.01 2.24 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -73.07 280.67 -1.33 -74.40 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -0.61 Total: 13.50 kcal Atomic # 6 Polarization: -38.97 SS G_CDS: 3.53 Total: -35.44 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -6.13 Total: -102.66 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.88 Total: 50.20 kcal Total: -73.07 -1.33 -74.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492693.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.328 kcal (2) G-P(sol) polarization free energy of solvation -73.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds