Wall clock time and date at job start Sun Mar 29 2020 21:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99787 * 2 1 4 4 H 1.48501 * 109.47342 * 270.00143 * 3 2 1 5 5 H 1.48500 * 109.47244 * 30.00143 * 3 2 1 6 6 H 1.48500 * 109.47047 * 150.00513 * 3 2 1 7 7 C 1.37869 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00287 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47097 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47225 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47246 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00286 * 180.02562 * 12 11 10 14 14 O 1.21288 * 119.99956 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00555 * 179.97438 * 13 12 11 16 16 O 1.42903 * 115.55621 * 350.68327 * 15 13 12 17 17 C 1.53000 * 117.50321 * 204.99873 * 15 13 12 18 18 C 1.52997 * 117.50247 * 136.36973 * 15 13 12 19 19 H 0.97001 * 119.99673 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47484 * 59.99679 * 9 7 2 21 21 H 1.08995 * 109.46926 * 299.99536 * 9 7 2 22 22 H 1.08996 * 109.47338 * 59.99440 * 10 9 7 23 23 H 1.09001 * 109.47088 * 299.99741 * 10 9 7 24 24 H 1.09005 * 109.47125 * 59.99868 * 11 10 9 25 25 H 1.09001 * 109.47085 * 299.99999 * 11 10 9 26 26 H 0.97001 * 119.99975 * 359.97438 * 12 11 10 27 27 H 0.96703 * 114.00080 * 34.31582 * 16 15 13 28 28 H 1.08990 * 117.49990 * 145.01584 * 17 15 13 29 29 H 1.09004 * 117.49237 * 359.97438 * 17 15 13 30 30 H 1.08999 * 117.49685 * 0.02562 * 18 15 13 31 31 H 1.08999 * 117.52022 * 214.97066 * 18 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4804 -4.9870 -0.0020 12 7 2.4324 -6.1005 -0.0024 13 6 1.9832 -7.3712 -0.0034 14 8 0.7907 -7.5929 -0.0035 15 6 2.9624 -8.5167 -0.0044 16 8 4.3300 -8.1584 -0.2128 17 6 2.4866 -9.8525 -0.5789 18 6 2.6749 -9.6928 0.9311 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5563 -0.8919 21 1 0.6242 -2.5575 0.8880 22 1 2.8713 -3.6047 0.8889 23 1 2.8726 -3.6039 -0.8910 24 1 0.8541 -5.0446 -0.8923 25 1 0.8533 -5.0449 0.8877 26 1 3.3860 -5.9233 -0.0026 27 1 4.5761 -7.3056 0.1709 28 1 3.2167 -10.4580 -1.1159 29 1 1.4651 -9.9029 -0.9559 30 1 1.7772 -9.6382 1.5469 31 1 3.5287 -10.1936 1.3875 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181532278.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:57 Heat of formation + Delta-G solvation = -73.113132 kcal Electronic energy + Delta-G solvation = -13693.973644 eV Core-core repulsion = 11168.938539 eV Total energy + Delta-G solvation = -2525.035106 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.27048 -37.46394 -35.79401 -34.21652 -33.24826 -31.24568 -27.15424 -24.40949 -22.77067 -22.49745 -20.80030 -20.01942 -18.67349 -16.56569 -15.91789 -15.61267 -15.26856 -14.72054 -14.52378 -14.25344 -13.95836 -13.15033 -12.67673 -12.32999 -11.91016 -11.87192 -11.65785 -11.31180 -10.93514 -10.79248 -10.63573 -10.04827 -9.93348 -9.76389 -9.40879 -9.15678 -8.95072 -8.40487 -6.05027 -4.08489 2.33807 3.03216 3.28967 3.35527 3.38171 3.48435 3.72828 4.41422 4.53586 4.67873 4.70477 5.30910 5.35453 5.39259 5.60560 5.63797 5.68500 5.88925 6.06781 6.30985 6.51460 6.70082 6.92295 7.00996 7.56441 7.58994 7.70716 7.93055 8.14049 8.33971 8.98029 9.56075 11.06259 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.074749 B = 0.004804 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.498689 B = 5827.182364 C = 6104.320386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.721 5.721 13 C 0.524 3.476 14 O -0.532 6.532 15 C 0.019 3.981 16 O -0.520 6.520 17 C -0.130 4.130 18 C -0.168 4.168 19 H 0.261 0.739 20 H 0.019 0.981 21 H 0.019 0.981 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.396 0.604 27 H 0.381 0.619 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.207 -15.558 0.909 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.372 5.372 13 C 0.309 3.691 14 O -0.410 6.410 15 C -0.026 4.026 16 O -0.326 6.326 17 C -0.167 4.167 18 C -0.206 4.206 19 H 0.071 0.929 20 H 0.038 0.962 21 H 0.038 0.962 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.230 0.770 27 H 0.230 0.770 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.192 -16.131 0.604 17.289 hybrid contribution 0.978 1.669 0.259 1.952 sum 7.170 -14.462 0.863 16.165 Atomic orbital electron populations 1.69967 1.06081 1.26747 1.50465 1.25027 0.94860 0.99337 0.95202 0.86571 0.79788 0.83366 0.78125 1.20632 1.21184 1.19878 1.21191 0.92997 0.90902 1.51095 0.92616 1.19034 0.93834 0.90824 0.97720 1.21909 0.99844 0.93206 1.00996 1.21729 0.91761 0.84838 1.02278 1.46131 1.10900 1.05888 1.74325 1.19860 0.88877 0.83636 0.76763 1.90729 1.15840 1.84483 1.49899 1.21638 0.82286 0.89784 1.08885 1.86515 1.23374 1.42725 1.80026 1.23245 1.03221 0.93802 0.96476 1.23567 1.04178 0.99116 0.93708 0.92886 0.96221 0.96224 0.92622 0.92581 0.91480 0.91460 0.76989 0.76998 0.87313 0.86659 0.87392 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 11 C 0.12 1.99 5.67 -4.05 -0.02 1.97 16 12 N -0.72 -10.02 5.52 -60.30 -0.33 -10.35 16 13 C 0.52 7.76 7.57 -10.99 -0.08 7.67 16 14 O -0.53 -9.77 16.43 5.55 0.09 -9.67 16 15 C 0.02 0.22 3.39 -91.77 -0.31 -0.09 16 16 O -0.52 -5.53 13.76 -35.23 -0.48 -6.01 16 17 C -0.13 -1.36 10.00 -26.73 -0.27 -1.62 16 18 C -0.17 -1.68 10.09 -26.73 -0.27 -1.95 16 19 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 20 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.40 4.23 6.61 -40.82 -0.27 3.96 16 27 H 0.38 2.75 7.22 45.56 0.33 3.07 16 28 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.12 1.25 7.89 -51.93 -0.41 0.84 16 30 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 272.45 15.07 4.11 4.11 Total: -1.00 -32.43 272.45 -6.25 -38.68 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -3.70 Total: 2.13 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.64 Total: -9.26 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.40 Total: -36.23 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.39 Total: -15.69 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.43 -6.25 -38.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181532278.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.435 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds