Wall clock time and date at job start Sun Mar 29 2020 21:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99787 * 2 1 4 4 H 1.48501 * 109.47342 * 270.00143 * 3 2 1 5 5 H 1.48500 * 109.47244 * 30.00143 * 3 2 1 6 6 H 1.48500 * 109.47047 * 150.00513 * 3 2 1 7 7 C 1.37869 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00287 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47097 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47225 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47246 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00286 * 180.02562 * 12 11 10 14 14 O 1.21288 * 119.99956 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00555 * 179.97438 * 13 12 11 16 16 O 1.42903 * 115.55621 * 350.68327 * 15 13 12 17 17 C 1.53000 * 117.50321 * 204.99873 * 15 13 12 18 18 C 1.52997 * 117.50247 * 136.36973 * 15 13 12 19 19 H 0.97001 * 119.99673 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47484 * 59.99679 * 9 7 2 21 21 H 1.08995 * 109.46926 * 299.99536 * 9 7 2 22 22 H 1.08996 * 109.47338 * 59.99440 * 10 9 7 23 23 H 1.09001 * 109.47088 * 299.99741 * 10 9 7 24 24 H 1.09005 * 109.47125 * 59.99868 * 11 10 9 25 25 H 1.09001 * 109.47085 * 299.99999 * 11 10 9 26 26 H 0.97001 * 119.99975 * 359.97438 * 12 11 10 27 27 H 0.96703 * 114.00080 * 34.31582 * 16 15 13 28 28 H 1.08990 * 117.49990 * 145.01584 * 17 15 13 29 29 H 1.09004 * 117.49237 * 359.97438 * 17 15 13 30 30 H 1.08999 * 117.49685 * 0.02562 * 18 15 13 31 31 H 1.08999 * 117.52022 * 214.97066 * 18 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4804 -4.9870 -0.0020 12 7 2.4324 -6.1005 -0.0024 13 6 1.9832 -7.3712 -0.0034 14 8 0.7907 -7.5929 -0.0035 15 6 2.9624 -8.5167 -0.0044 16 8 4.3300 -8.1584 -0.2128 17 6 2.4866 -9.8525 -0.5789 18 6 2.6749 -9.6928 0.9311 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5563 -0.8919 21 1 0.6242 -2.5575 0.8880 22 1 2.8713 -3.6047 0.8889 23 1 2.8726 -3.6039 -0.8910 24 1 0.8541 -5.0446 -0.8923 25 1 0.8533 -5.0449 0.8877 26 1 3.3860 -5.9233 -0.0026 27 1 4.5761 -7.3056 0.1709 28 1 3.2167 -10.4580 -1.1159 29 1 1.4651 -9.9029 -0.9559 30 1 1.7772 -9.6382 1.5469 31 1 3.5287 -10.1936 1.3875 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181532278.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:57 Heat of formation + Delta-G solvation = -97.918601 kcal Electronic energy + Delta-G solvation = -13695.049290 eV Core-core repulsion = 11168.938539 eV Total energy + Delta-G solvation = -2526.110751 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.37832 -38.46566 -37.18406 -35.51292 -34.76572 -33.01361 -28.91337 -25.93985 -23.99272 -23.53729 -22.40697 -21.11989 -19.79929 -18.53493 -17.27922 -16.81055 -16.48230 -16.35960 -15.65435 -15.47184 -15.31494 -14.32506 -14.08436 -13.78718 -13.69266 -13.47126 -12.76451 -12.57309 -12.46771 -12.40445 -12.18838 -11.70590 -11.60942 -11.26417 -10.94434 -10.60558 -10.55948 -10.22888 -8.20115 -6.31715 1.22858 1.42258 1.43315 1.54285 1.88738 2.42072 2.67557 2.84555 3.14039 3.52121 3.83727 3.86683 4.10063 4.16953 4.50539 4.59690 4.64699 4.85536 4.90328 4.92384 5.12853 5.14014 5.29822 5.50466 5.68691 5.83115 6.13573 6.21738 6.61339 6.85840 7.00757 7.38248 8.92026 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.074749 B = 0.004804 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.498689 B = 5827.182364 C = 6104.320386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.102 4.102 11 C 0.129 3.871 12 N -0.709 5.709 13 C 0.521 3.479 14 O -0.574 6.574 15 C 0.010 3.990 16 O -0.521 6.521 17 C -0.128 4.128 18 C -0.153 4.153 19 H 0.263 0.737 20 H -0.008 1.008 21 H -0.007 1.007 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.414 0.586 27 H 0.395 0.605 28 H 0.128 0.872 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.564 -16.020 1.068 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.140 4.140 11 C 0.005 3.995 12 N -0.362 5.362 13 C 0.308 3.692 14 O -0.454 6.454 15 C -0.034 4.034 16 O -0.329 6.329 17 C -0.166 4.166 18 C -0.191 4.191 19 H 0.072 0.928 20 H 0.010 0.990 21 H 0.012 0.988 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.252 0.748 27 H 0.246 0.754 28 H 0.146 0.854 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.605 -16.597 0.766 18.711 hybrid contribution 0.226 1.784 0.209 1.810 sum 8.831 -14.813 0.975 17.273 Atomic orbital electron populations 1.70112 1.07968 1.27809 1.51694 1.26014 0.95722 1.03555 0.94747 0.85415 0.78711 0.78284 0.78433 1.19885 1.21087 1.18352 1.21680 0.93786 0.91971 1.50484 0.91450 1.18955 0.94476 0.92978 0.95144 1.21612 0.98488 0.91571 1.02354 1.21314 0.91871 0.85275 1.01007 1.45875 1.11378 1.05002 1.73940 1.20448 0.88966 0.84292 0.75540 1.90710 1.17841 1.85114 1.51750 1.21466 0.82068 0.88885 1.11016 1.86507 1.22153 1.43852 1.80411 1.23361 1.03266 0.92827 0.97130 1.23657 1.04684 0.97309 0.93452 0.92813 0.98979 0.98827 0.91003 0.91268 0.93068 0.92719 0.74848 0.75383 0.85385 0.87584 0.88019 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.78 13.29 21.44 0.28 -56.49 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.54 -29.79 9.11 25.60 0.23 -29.55 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16 11 C 0.13 4.42 5.67 86.38 0.49 4.91 16 12 N -0.71 -18.82 5.52 -463.06 -2.56 -21.37 16 13 C 0.52 14.97 7.57 87.66 0.66 15.63 16 14 O -0.57 -21.22 16.43 -3.05 -0.05 -21.27 16 15 C 0.01 0.22 3.39 -11.54 -0.04 0.19 16 16 O -0.52 -9.55 13.76 -148.98 -2.05 -11.60 16 17 C -0.13 -2.42 10.00 30.60 0.31 -2.12 16 18 C -0.15 -2.71 10.09 30.60 0.31 -2.40 16 19 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 20 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 21 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 22 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.41 7.85 6.61 -92.71 -0.61 7.24 16 27 H 0.39 4.48 7.22 -74.06 -0.53 3.95 16 28 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.11 2.20 7.89 -2.38 -0.02 2.19 16 30 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -70.02 272.45 0.37 -69.64 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -0.01 Total: 11.13 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 2.73 Total: -15.40 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -2.27 Total: -77.87 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -2.10 Total: -32.86 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -70.02 0.37 -69.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181532278.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.276 kcal (2) G-P(sol) polarization free energy of solvation -70.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds