Wall clock time and date at job start Sun Mar 29 2020 22:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.47482 * 110.99365 * 265.97110 * 10 9 7 12 12 C 1.53521 * 87.92844 * 221.29367 * 11 10 9 13 13 O 1.42897 * 114.16830 * 139.67037 * 12 11 10 14 14 C 1.42901 * 113.99933 * 116.16158 * 13 12 11 15 15 C 1.54038 * 113.81572 * 248.50861 * 14 13 12 16 16 O 1.44446 * 85.42684 * 223.23526 * 15 14 13 17 17 C 1.44182 * 93.37761 * 24.08492 * 16 15 14 18 18 C 1.47483 * 110.99957 * 170.00021 * 10 9 7 19 19 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 21 21 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 22 22 H 1.08997 * 113.48003 * 336.05801 * 11 10 9 23 23 H 1.09000 * 113.47348 * 106.53086 * 11 10 9 24 24 H 1.08994 * 114.16931 * 272.37864 * 12 11 10 25 25 H 1.09003 * 112.99880 * 20.32806 * 14 13 12 26 26 H 1.08997 * 113.86886 * 337.33955 * 15 14 13 27 27 H 1.09000 * 113.86484 * 109.04644 * 15 14 13 28 28 H 1.08999 * 113.86958 * 221.76677 * 17 16 15 29 29 H 1.09006 * 113.97789 * 90.07600 * 17 16 15 30 30 H 1.08998 * 113.47131 * 253.46332 * 18 10 9 31 31 H 1.09001 * 113.47538 * 23.93654 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 2.4752 -4.0803 -1.3741 12 6 2.4187 -5.5183 -0.8393 13 8 1.7487 -6.4380 -1.7036 14 6 2.5896 -7.4751 -2.2128 15 6 2.8563 -7.3727 -3.7265 16 8 2.6366 -8.8003 -3.7445 17 6 1.8387 -8.7786 -2.5438 18 6 1.5182 -4.8986 0.2386 19 1 -0.4850 0.8401 0.0004 20 1 0.6246 -2.5570 0.8898 21 1 0.6239 -2.5567 -0.8903 22 1 1.6753 -3.8466 -2.0765 23 1 3.4594 -3.7930 -1.7441 24 1 3.3711 -5.8926 -0.4640 25 1 3.4897 -7.6249 -1.6165 26 1 2.1020 -6.8036 -4.2697 27 1 3.8760 -7.0790 -3.9758 28 1 2.0529 -9.5975 -1.8571 29 1 0.7724 -8.6400 -2.7229 30 1 1.6913 -5.3048 1.2351 31 1 0.4628 -4.8832 -0.0337 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222686750.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:35 Heat of formation + Delta-G solvation = -14.122352 kcal Electronic energy + Delta-G solvation = -14047.416052 eV Core-core repulsion = 11524.938979 eV Total energy + Delta-G solvation = -2522.477073 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.51543 -39.32564 -36.06941 -32.84842 -29.52694 -28.31718 -26.71560 -25.43314 -24.98655 -21.67318 -21.01191 -19.44762 -17.59447 -16.59509 -16.36932 -16.03014 -15.34606 -14.81345 -14.39914 -14.30230 -13.16789 -12.98951 -12.63630 -12.39935 -12.08122 -12.03238 -11.41156 -11.25800 -11.03487 -10.79998 -10.56358 -10.22494 -9.91022 -9.71725 -9.26119 -9.22107 -8.44901 -7.96330 -6.04760 -4.06419 3.33038 3.36665 3.39876 3.50745 3.62592 4.16319 4.41986 4.73229 4.85067 4.94455 5.02868 5.21046 5.24441 5.30513 5.33178 5.54910 5.74563 5.90124 5.91310 6.03422 6.13110 6.26426 6.34934 6.55547 7.15967 7.31765 7.62039 7.82728 8.07480 8.42300 9.00417 9.57618 11.06342 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.069310 B = 0.005452 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.886893 B = 5134.545017 C = 5270.458666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.161 3.839 10 N -0.464 5.464 11 C -0.005 4.005 12 C 0.047 3.953 13 O -0.359 6.359 14 C 0.021 3.979 15 C 0.017 3.983 16 O -0.381 6.381 17 C 0.036 3.964 18 C -0.004 4.004 19 H 0.262 0.738 20 H 0.030 0.970 21 H 0.005 0.995 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.298 -14.061 -3.985 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.035 3.965 10 N -0.189 5.189 11 C -0.134 4.134 12 C -0.010 4.010 13 O -0.277 6.277 14 C -0.038 4.038 15 C -0.059 4.059 16 O -0.300 6.300 17 C -0.040 4.040 18 C -0.133 4.133 19 H 0.072 0.928 20 H 0.048 0.952 21 H 0.023 0.977 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.545 -13.863 -3.756 15.065 hybrid contribution -0.179 0.982 -0.326 1.050 sum 4.367 -12.881 -4.081 14.200 Atomic orbital electron populations 1.69950 1.06093 1.26978 1.50915 1.25009 0.94901 0.99411 0.95366 0.86513 0.79403 0.82538 0.78681 1.21305 1.20130 1.20247 1.21053 0.93551 0.89742 1.50198 0.91905 1.20262 0.90551 0.88816 0.96830 1.68967 1.33797 1.01605 1.14482 1.24250 1.02357 0.92512 0.94279 1.24208 0.96316 0.88727 0.91790 1.88048 1.36150 1.39260 1.64192 1.25756 0.94895 0.88430 0.94707 1.24693 1.02768 0.82246 0.96235 1.89718 1.70034 1.23595 1.46642 1.24314 0.97107 0.96555 0.86058 1.24066 0.98063 0.93017 0.98175 0.92809 0.95220 0.97675 0.91017 0.90541 0.88622 0.88421 0.89113 0.88823 0.88701 0.89191 0.90287 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.57 9.39 -34.44 -0.32 -14.89 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.16 4.28 4.57 -4.98 -0.02 4.25 16 10 N -0.46 -10.18 6.32 -246.07 -1.55 -11.74 16 11 C 0.00 -0.08 7.55 -7.53 -0.06 -0.14 16 12 C 0.05 0.73 4.65 -26.19 -0.12 0.61 16 13 O -0.36 -5.20 10.42 -35.23 -0.37 -5.57 16 14 C 0.02 0.24 4.54 -25.65 -0.12 0.12 16 15 C 0.02 0.19 9.07 37.64 0.34 0.53 16 16 O -0.38 -4.72 12.46 -35.23 -0.44 -5.16 16 17 C 0.04 0.38 9.05 37.64 0.34 0.72 16 18 C 0.00 -0.07 7.52 -7.53 -0.06 -0.13 16 19 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 20 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 21 H 0.01 0.15 7.30 -51.93 -0.38 -0.23 16 22 H 0.07 1.43 7.42 -51.93 -0.39 1.05 16 23 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 24 H 0.10 1.28 7.49 -51.93 -0.39 0.90 16 25 H 0.10 0.96 7.49 -51.93 -0.39 0.57 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 LS Contribution 265.81 15.07 4.01 4.01 Total: -1.00 -31.20 265.81 -7.21 -38.40 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.45 Total: -3.05 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.11 Total: -7.46 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.82 Total: -37.98 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.81 Total: -10.73 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.20 -7.21 -38.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222686750.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.281 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds