Wall clock time and date at job start Sun Mar 29 2020 22:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.47482 * 110.99365 * 265.97110 * 10 9 7 12 12 C 1.53521 * 87.92844 * 221.29367 * 11 10 9 13 13 O 1.42897 * 114.16830 * 139.67037 * 12 11 10 14 14 C 1.42901 * 113.99933 * 116.16158 * 13 12 11 15 15 C 1.54038 * 113.81572 * 248.50861 * 14 13 12 16 16 O 1.44446 * 85.42684 * 223.23526 * 15 14 13 17 17 C 1.44182 * 93.37761 * 24.08492 * 16 15 14 18 18 C 1.47483 * 110.99957 * 170.00021 * 10 9 7 19 19 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 21 21 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 22 22 H 1.08997 * 113.48003 * 336.05801 * 11 10 9 23 23 H 1.09000 * 113.47348 * 106.53086 * 11 10 9 24 24 H 1.08994 * 114.16931 * 272.37864 * 12 11 10 25 25 H 1.09003 * 112.99880 * 20.32806 * 14 13 12 26 26 H 1.08997 * 113.86886 * 337.33955 * 15 14 13 27 27 H 1.09000 * 113.86484 * 109.04644 * 15 14 13 28 28 H 1.08999 * 113.86958 * 221.76677 * 17 16 15 29 29 H 1.09006 * 113.97789 * 90.07600 * 17 16 15 30 30 H 1.08998 * 113.47131 * 253.46332 * 18 10 9 31 31 H 1.09001 * 113.47538 * 23.93654 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 2.4752 -4.0803 -1.3741 12 6 2.4187 -5.5183 -0.8393 13 8 1.7487 -6.4380 -1.7036 14 6 2.5896 -7.4751 -2.2128 15 6 2.8563 -7.3727 -3.7265 16 8 2.6366 -8.8003 -3.7445 17 6 1.8387 -8.7786 -2.5438 18 6 1.5182 -4.8986 0.2386 19 1 -0.4850 0.8401 0.0004 20 1 0.6246 -2.5570 0.8898 21 1 0.6239 -2.5567 -0.8903 22 1 1.6753 -3.8466 -2.0765 23 1 3.4594 -3.7930 -1.7441 24 1 3.3711 -5.8926 -0.4640 25 1 3.4897 -7.6249 -1.6165 26 1 2.1020 -6.8036 -4.2697 27 1 3.8760 -7.0790 -3.9758 28 1 2.0529 -9.5975 -1.8571 29 1 0.7724 -8.6400 -2.7229 30 1 1.6913 -5.3048 1.2351 31 1 0.4628 -4.8832 -0.0337 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222686750.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:35 Heat of formation + Delta-G solvation = -39.141095 kcal Electronic energy + Delta-G solvation = -14048.500946 eV Core-core repulsion = 11524.938979 eV Total energy + Delta-G solvation = -2523.561967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.51881 -40.70903 -37.30814 -34.99245 -31.23809 -29.48436 -27.55488 -27.07097 -26.71113 -23.53821 -21.93398 -20.89479 -18.84257 -18.37842 -17.49455 -17.04947 -16.82488 -16.28360 -16.08281 -15.74865 -14.52499 -14.46432 -14.08767 -13.76171 -13.58313 -13.45714 -12.94740 -12.75316 -12.58789 -12.28511 -12.15922 -11.94276 -11.58183 -11.22370 -10.72657 -10.63261 -10.41986 -9.75846 -8.24531 -6.35791 1.39947 1.43668 1.51951 2.37491 2.52485 2.68117 3.07701 3.23334 3.39252 3.55358 3.93521 3.96979 4.16026 4.38243 4.42610 4.51415 4.57892 4.63855 4.67259 4.76309 4.88235 4.94784 4.98165 5.06412 5.06788 5.54008 5.73070 6.03543 6.21940 6.38346 6.78101 7.34052 8.86793 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.069310 B = 0.005452 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.886893 B = 5134.545017 C = 5270.458666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.281 1.281 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.176 3.824 10 N -0.480 5.480 11 C -0.012 4.012 12 C 0.082 3.918 13 O -0.372 6.372 14 C 0.015 3.985 15 C 0.014 3.986 16 O -0.398 6.398 17 C 0.037 3.963 18 C -0.010 4.010 19 H 0.266 0.734 20 H 0.002 0.998 21 H -0.022 1.022 22 H 0.051 0.949 23 H 0.087 0.913 24 H 0.130 0.870 25 H 0.122 0.878 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.992 -14.711 -3.942 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.206 1.206 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.080 0.920 9 C 0.049 3.951 10 N -0.204 5.204 11 C -0.142 4.142 12 C 0.023 3.977 13 O -0.290 6.290 14 C -0.043 4.043 15 C -0.062 4.062 16 O -0.318 6.318 17 C -0.039 4.039 18 C -0.139 4.139 19 H 0.075 0.925 20 H 0.020 0.980 21 H -0.005 1.005 22 H 0.069 0.931 23 H 0.106 0.894 24 H 0.147 0.853 25 H 0.140 0.860 26 H 0.101 0.899 27 H 0.130 0.870 28 H 0.138 0.862 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.246 -14.542 -3.719 16.257 hybrid contribution -0.740 1.087 -0.375 1.368 sum 5.506 -13.454 -4.094 15.103 Atomic orbital electron populations 1.70081 1.07825 1.28169 1.51474 1.25982 0.95812 1.03438 0.94519 0.85364 0.78126 0.77495 0.79213 1.20616 1.19152 1.19173 1.21398 0.93672 0.91091 1.50600 0.92029 1.19913 0.90593 0.90462 0.94099 1.68851 1.32874 1.01865 1.16812 1.24303 1.02070 0.95341 0.92458 1.23892 0.96574 0.87307 0.89883 1.88044 1.37150 1.39793 1.63999 1.26052 0.95596 0.87730 0.94919 1.24778 1.03646 0.81719 0.96082 1.89709 1.70410 1.24173 1.47531 1.24454 0.96818 0.96907 0.85722 1.24140 0.97692 0.91554 1.00525 0.92528 0.98031 1.00470 0.93062 0.89423 0.85302 0.86027 0.89895 0.87039 0.86186 0.89473 0.88218 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 13.29 21.45 0.28 -56.88 16 2 C 0.00 0.03 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.53 -30.93 9.39 25.60 0.24 -30.69 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.18 9.69 4.57 85.55 0.39 10.08 16 10 N -0.48 -21.14 6.32 -932.82 -5.89 -27.04 16 11 C -0.01 -0.46 7.55 83.58 0.63 0.17 16 12 C 0.08 2.34 4.65 30.94 0.14 2.48 16 13 O -0.37 -10.05 10.42 -148.98 -1.55 -11.61 16 14 C 0.02 0.30 4.54 31.29 0.14 0.44 16 15 C 0.01 0.29 9.07 72.30 0.66 0.94 16 16 O -0.40 -9.06 12.46 -148.98 -1.86 -10.92 16 17 C 0.04 0.68 9.05 72.29 0.65 1.34 16 18 C -0.01 -0.35 7.52 83.58 0.63 0.28 16 19 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 20 H 0.00 0.09 8.08 -2.38 -0.02 0.07 16 21 H -0.02 -1.33 7.30 -2.39 -0.02 -1.34 16 22 H 0.05 2.11 7.42 -2.39 -0.02 2.09 16 23 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 24 H 0.13 2.91 7.49 -2.39 -0.02 2.89 16 25 H 0.12 1.87 7.49 -2.39 -0.02 1.85 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.10 3.08 8.14 -2.39 -0.02 3.07 16 31 H 0.05 2.10 7.91 -2.39 -0.02 2.08 16 Total: -1.00 -67.74 265.81 -1.94 -69.68 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.10 Total: 4.52 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 3.95 Total: -14.46 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -5.61 Total: -83.91 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -3.41 Total: -22.53 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -67.74 -1.94 -69.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222686750.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.534 kcal (2) G-P(sol) polarization free energy of solvation -67.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds