Wall clock time and date at job start Sun Mar 29 2020 22:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00384 * 2 1 4 4 H 1.48493 * 109.46992 * 270.00038 * 3 2 1 5 5 H 1.48506 * 109.46903 * 29.99712 * 3 2 1 6 6 H 1.48501 * 109.47282 * 149.99672 * 3 2 1 7 7 C 1.38818 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00208 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64540 * 0.03273 * 9 7 2 11 11 C 1.54332 * 107.26809 * 181.02825 * 10 9 7 12 12 C 1.55157 * 102.94104 * 22.19421 * 11 10 9 13 13 H 1.09002 * 111.00367 * 82.57305 * 12 11 10 14 14 O 1.42903 * 111.03704 * 206.40796 * 12 11 10 15 15 C 1.42889 * 114.00101 * 206.79721 * 14 12 11 16 16 C 1.54036 * 113.81812 * 246.18811 * 15 14 12 17 17 O 1.44177 * 85.51977 * 223.19664 * 16 15 14 18 18 C 1.44173 * 93.33961 * 24.19189 * 17 16 15 19 19 C 1.47418 * 125.64834 * 179.97438 * 9 7 2 20 20 H 0.97002 * 119.99710 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.88762 * 300.44654 * 10 9 7 22 22 H 1.09003 * 109.88200 * 61.45961 * 10 9 7 23 23 H 1.09000 * 110.72090 * 263.83388 * 11 10 9 24 24 H 1.08996 * 110.72335 * 140.56189 * 11 10 9 25 25 H 1.09000 * 113.00210 * 18.17730 * 15 14 12 26 26 H 1.08998 * 113.86645 * 337.34377 * 16 15 14 27 27 H 1.09007 * 113.86280 * 109.04891 * 16 15 14 28 28 H 1.09004 * 113.86658 * 221.66215 * 18 17 16 29 29 H 1.08998 * 113.98068 * 89.96729 * 18 17 16 30 30 H 1.09003 * 110.36673 * 37.06419 * 19 9 7 31 31 H 1.08997 * 110.36612 * 274.74693 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5327 -0.0007 11 6 -0.4485 -4.0441 0.0263 12 6 0.8513 -4.6560 0.6123 13 1 0.8553 -4.5958 1.7006 14 8 1.0250 -6.0056 0.1760 15 6 1.7862 -6.8138 1.0755 16 6 3.1411 -7.2730 0.5045 17 8 2.8180 -8.5573 1.0745 18 6 1.3988 -8.3045 1.0522 19 6 1.9334 -3.7312 0.0005 20 1 -0.4850 0.8401 -0.0004 21 1 -0.5583 -2.0518 0.8823 22 1 -0.5538 -2.0822 -0.9018 23 1 -0.6308 -4.4183 -0.9811 24 1 -1.2991 -4.2513 0.6755 25 1 1.8495 -6.3912 2.0782 26 1 3.1838 -7.2721 -0.5847 27 1 4.0014 -6.7891 0.9670 28 1 0.8771 -8.6386 1.9490 29 1 0.9074 -8.6180 0.1311 30 1 2.8327 -3.7406 0.6164 31 1 2.1668 -4.0419 -1.0178 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222686981.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:23 Heat of formation + Delta-G solvation = -26.408598 kcal Electronic energy + Delta-G solvation = -14434.703199 eV Core-core repulsion = 11911.693354 eV Total energy + Delta-G solvation = -2523.009845 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.36682 -37.95944 -35.58647 -32.19427 -29.41723 -28.46059 -27.00241 -26.53850 -24.35126 -20.87482 -20.43956 -20.04491 -17.34503 -16.98446 -16.40379 -15.88190 -14.95191 -14.53808 -14.40602 -13.57581 -13.08076 -12.78807 -12.59103 -12.23055 -11.96761 -11.46388 -11.37709 -10.97440 -10.86519 -10.72283 -10.23726 -10.11726 -9.87735 -9.75834 -9.68313 -9.16061 -8.62336 -6.86917 -5.73854 -3.08134 3.38983 3.43614 3.45749 3.62845 3.79982 4.32164 4.49196 4.88761 5.15604 5.33569 5.36857 5.39125 5.45575 5.50672 5.69384 5.73441 5.78329 5.92116 6.02334 6.23528 6.42877 6.49292 6.63322 6.66982 7.51731 7.52779 7.58205 7.79628 8.22695 9.18814 9.78892 10.44236 11.37910 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063227 B = 0.006678 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.745616 B = 4191.704098 C = 4545.699183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.139 4.139 12 C 0.068 3.932 13 H 0.069 0.931 14 O -0.364 6.364 15 C 0.022 3.978 16 C 0.019 3.981 17 O -0.381 6.381 18 C 0.035 3.965 19 C 0.120 3.880 20 H 0.253 0.747 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -12.107 2.230 12.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.178 4.178 12 C 0.010 3.990 13 H 0.087 0.913 14 O -0.281 6.281 15 C -0.037 4.037 16 C -0.058 4.058 17 O -0.300 6.300 18 C -0.042 4.042 19 C -0.007 4.007 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.055 0.945 31 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.422 -12.161 2.149 12.431 hybrid contribution 0.448 1.155 0.156 1.249 sum 1.870 -11.006 2.305 11.399 Atomic orbital electron populations 1.69956 1.04920 1.25134 1.57013 1.24823 0.95751 0.97728 1.02138 0.86092 0.78554 0.83330 0.77623 1.21530 1.21618 1.20667 1.19069 0.90473 0.82276 1.43966 0.90369 1.44364 1.01754 0.99726 1.87386 1.21178 0.84389 0.87672 1.01465 1.23009 0.95229 0.98872 1.00642 1.23617 0.97702 0.80090 0.97624 0.91329 1.87963 1.72232 1.22028 1.45919 1.25699 0.91205 0.91809 0.94952 1.24636 0.98651 0.82593 0.99937 1.89662 1.20182 1.37434 1.82752 1.24333 0.84103 0.92827 1.02889 1.21925 0.94410 0.86602 0.97786 0.93671 0.93340 0.93491 0.91429 0.91798 0.88515 0.89210 0.88877 0.88836 0.89299 0.94461 0.95467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.31 55.49 0.57 -26.58 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.69 3.39 -170.06 -0.58 -16.26 16 10 C 0.18 4.35 5.38 -3.06 -0.02 4.34 16 11 C -0.14 -2.68 6.69 -24.89 -0.17 -2.84 16 12 C 0.07 1.23 3.51 -24.57 -0.09 1.14 16 13 H 0.07 1.19 7.50 -51.93 -0.39 0.80 16 14 O -0.36 -5.87 10.18 -35.23 -0.36 -6.23 16 15 C 0.02 0.29 4.55 -25.65 -0.12 0.18 16 16 C 0.02 0.23 9.05 37.61 0.34 0.57 16 17 O -0.38 -5.15 12.45 -35.23 -0.44 -5.59 16 18 C 0.04 0.41 9.05 37.61 0.34 0.75 16 19 C 0.12 2.53 6.97 -2.52 -0.02 2.52 16 20 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 21 H 0.05 1.29 7.38 -51.93 -0.38 0.91 16 22 H 0.05 1.27 7.50 -51.93 -0.39 0.88 16 23 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.10 1.19 7.49 -51.93 -0.39 0.80 16 26 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 259.32 15.07 3.91 3.91 Total: -1.00 -30.72 259.32 -6.37 -37.09 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.48 Total: -3.10 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 0.03 Total: -0.29 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.01 Total: -42.85 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.80 Total: -11.82 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.72 -6.37 -37.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222686981.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.683 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds