Wall clock time and date at job start Sun Mar 29 2020 22:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00384 * 2 1 4 4 H 1.48493 * 109.46992 * 270.00038 * 3 2 1 5 5 H 1.48506 * 109.46903 * 29.99712 * 3 2 1 6 6 H 1.48501 * 109.47282 * 149.99672 * 3 2 1 7 7 C 1.38818 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00208 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64540 * 0.03273 * 9 7 2 11 11 C 1.54332 * 107.26809 * 181.02825 * 10 9 7 12 12 C 1.55157 * 102.94104 * 22.19421 * 11 10 9 13 13 H 1.09002 * 111.00367 * 82.57305 * 12 11 10 14 14 O 1.42903 * 111.03704 * 206.40796 * 12 11 10 15 15 C 1.42889 * 114.00101 * 206.79721 * 14 12 11 16 16 C 1.54036 * 113.81812 * 246.18811 * 15 14 12 17 17 O 1.44177 * 85.51977 * 223.19664 * 16 15 14 18 18 C 1.44173 * 93.33961 * 24.19189 * 17 16 15 19 19 C 1.47418 * 125.64834 * 179.97438 * 9 7 2 20 20 H 0.97002 * 119.99710 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.88762 * 300.44654 * 10 9 7 22 22 H 1.09003 * 109.88200 * 61.45961 * 10 9 7 23 23 H 1.09000 * 110.72090 * 263.83388 * 11 10 9 24 24 H 1.08996 * 110.72335 * 140.56189 * 11 10 9 25 25 H 1.09000 * 113.00210 * 18.17730 * 15 14 12 26 26 H 1.08998 * 113.86645 * 337.34377 * 16 15 14 27 27 H 1.09007 * 113.86280 * 109.04891 * 16 15 14 28 28 H 1.09004 * 113.86658 * 221.66215 * 18 17 16 29 29 H 1.08998 * 113.98068 * 89.96729 * 18 17 16 30 30 H 1.09003 * 110.36673 * 37.06419 * 19 9 7 31 31 H 1.08997 * 110.36612 * 274.74693 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5327 -0.0007 11 6 -0.4485 -4.0441 0.0263 12 6 0.8513 -4.6560 0.6123 13 1 0.8553 -4.5958 1.7006 14 8 1.0250 -6.0056 0.1760 15 6 1.7862 -6.8138 1.0755 16 6 3.1411 -7.2730 0.5045 17 8 2.8180 -8.5573 1.0745 18 6 1.3988 -8.3045 1.0522 19 6 1.9334 -3.7312 0.0005 20 1 -0.4850 0.8401 -0.0004 21 1 -0.5583 -2.0518 0.8823 22 1 -0.5538 -2.0822 -0.9018 23 1 -0.6308 -4.4183 -0.9811 24 1 -1.2991 -4.2513 0.6755 25 1 1.8495 -6.3912 2.0782 26 1 3.1838 -7.2721 -0.5847 27 1 4.0014 -6.7891 0.9670 28 1 0.8771 -8.6386 1.9490 29 1 0.9074 -8.6180 0.1311 30 1 2.8327 -3.7406 0.6164 31 1 2.1668 -4.0419 -1.0178 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222686981.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:22 Heat of formation + Delta-G solvation = -47.947651 kcal Electronic energy + Delta-G solvation = -14435.637202 eV Core-core repulsion = 11911.693354 eV Total energy + Delta-G solvation = -2523.943848 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.38839 -39.49415 -37.13753 -34.16260 -31.20775 -29.72840 -28.61985 -27.48854 -26.31878 -22.15401 -22.04709 -21.63236 -19.00342 -18.48131 -17.42655 -16.95447 -16.73957 -16.14465 -16.02045 -15.10614 -14.59148 -14.33982 -13.85215 -13.83039 -13.49986 -13.00832 -12.90926 -12.66395 -12.55233 -12.09140 -12.03286 -11.89866 -11.78382 -11.44277 -10.73423 -10.71438 -10.46903 -8.94277 -7.87300 -5.24289 1.46293 1.48461 1.57141 2.43140 2.60567 2.69384 3.31331 3.32472 3.73248 3.83295 3.94760 4.04697 4.16335 4.27739 4.43480 4.56429 4.59429 4.70339 4.79013 4.92930 4.98365 5.04398 5.08939 5.10394 5.42495 5.61362 5.71830 6.13543 6.27467 7.07103 7.73241 8.37310 9.23223 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063227 B = 0.006678 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.745616 B = 4191.704098 C = 4545.699183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.982 3.018 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.247 4.247 8 H 0.084 0.916 9 N -0.627 5.627 10 C 0.185 3.815 11 C -0.127 4.127 12 C 0.088 3.912 13 H 0.082 0.918 14 O -0.367 6.367 15 C 0.011 3.989 16 C 0.017 3.983 17 O -0.397 6.397 18 C 0.041 3.959 19 C 0.115 3.885 20 H 0.248 0.752 21 H 0.019 0.981 22 H 0.010 0.990 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 -13.230 2.861 13.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.258 4.258 3 Si 0.809 3.191 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.375 4.375 8 H 0.102 0.898 9 N -0.355 5.355 10 C 0.060 3.940 11 C -0.165 4.165 12 C 0.029 3.971 13 H 0.100 0.900 14 O -0.285 6.285 15 C -0.047 4.047 16 C -0.059 4.059 17 O -0.317 6.317 18 C -0.035 4.035 19 C -0.011 4.011 20 H 0.058 0.942 21 H 0.037 0.963 22 H 0.028 0.972 23 H 0.091 0.909 24 H 0.108 0.892 25 H 0.127 0.873 26 H 0.107 0.893 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.111 -13.326 2.780 13.776 hybrid contribution 0.275 1.426 -0.063 1.453 sum 2.386 -11.901 2.716 12.438 Atomic orbital electron populations 1.70175 1.06363 1.25483 1.58065 1.25699 0.96670 1.01143 1.02329 0.85037 0.77690 0.78836 0.77505 1.21308 1.21881 1.19187 1.19482 0.91087 0.83558 1.43406 0.89841 1.44676 1.02571 1.00978 1.87251 1.20932 0.83786 0.91049 0.98279 1.22838 0.96920 0.94880 1.01849 1.23263 0.95254 0.80708 0.97849 0.90001 1.87958 1.72807 1.20821 1.46927 1.26010 0.91372 0.92250 0.95056 1.24703 0.98860 0.82297 1.00058 1.89657 1.21384 1.37789 1.82870 1.24474 0.83443 0.91221 1.04407 1.22086 0.95739 0.85245 0.97990 0.94229 0.96258 0.97196 0.90933 0.89171 0.87328 0.89292 0.87740 0.86413 0.88791 0.93502 0.95889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.45 10.31 21.65 0.22 -57.23 16 2 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 3 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.25 -13.94 10.28 84.03 0.86 -13.07 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 9 N -0.63 -32.71 3.39 -691.96 -2.35 -35.06 16 10 C 0.18 9.20 5.38 86.73 0.47 9.67 16 11 C -0.13 -4.70 6.69 31.79 0.21 -4.49 16 12 C 0.09 2.99 3.51 31.99 0.11 3.10 16 13 H 0.08 2.61 7.50 -2.39 -0.02 2.59 16 14 O -0.37 -10.86 10.18 -148.98 -1.52 -12.38 16 15 C 0.01 0.27 4.55 31.29 0.14 0.41 16 16 C 0.02 0.40 9.05 72.27 0.65 1.05 16 17 O -0.40 -9.75 12.45 -148.98 -1.86 -11.61 16 18 C 0.04 0.81 9.05 72.27 0.65 1.47 16 19 C 0.12 4.76 6.97 86.86 0.61 5.36 16 20 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 21 H 0.02 1.05 7.38 -2.39 -0.02 1.04 16 22 H 0.01 0.55 7.50 -2.39 -0.02 0.53 16 23 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 24 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 25 H 0.11 2.31 7.49 -2.39 -0.02 2.29 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.12 1.77 8.14 -2.39 -0.02 1.76 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -65.98 259.32 1.81 -64.18 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.10 Total: 4.20 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 4.18 Total: 0.22 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -2.13 Total: -92.29 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -3.37 Total: -23.98 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -65.98 1.81 -64.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222686981.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.227 kcal (2) G-P(sol) polarization free energy of solvation -65.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds