Wall clock time and date at job start Sun Mar 29 2020 22:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00456 * 2 1 4 4 H 1.48507 * 109.47081 * 264.98937 * 3 2 1 5 5 H 1.48502 * 109.47308 * 144.98913 * 3 2 1 6 6 H 1.48499 * 109.47100 * 24.98684 * 3 2 1 7 7 C 1.38812 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00054 * 187.37604 * 7 2 1 9 9 N 1.36941 * 120.00565 * 7.38012 * 7 2 1 10 10 C 1.47021 * 125.64137 * 6.32996 * 9 7 2 11 11 C 1.54340 * 107.26384 * 178.85109 * 10 9 7 12 12 C 1.55153 * 103.01975 * 338.14806 * 11 10 9 13 13 H 1.09006 * 111.03574 * 277.21639 * 12 11 10 14 14 O 1.42895 * 111.00660 * 153.37900 * 12 11 10 15 15 C 1.42895 * 114.00333 * 156.34703 * 14 12 11 16 16 C 1.54037 * 113.81816 * 246.18520 * 15 14 12 17 17 O 1.44173 * 85.52123 * 223.19555 * 16 15 14 18 18 C 1.44180 * 93.33989 * 24.19241 * 17 16 15 19 19 C 1.47414 * 125.65304 * 186.64665 * 9 7 2 20 20 H 0.97004 * 119.99432 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.88851 * 298.40020 * 10 9 7 22 22 H 1.09007 * 109.88284 * 59.56743 * 10 9 7 23 23 H 1.08998 * 110.84923 * 219.67449 * 11 10 9 24 24 H 1.09006 * 110.66068 * 96.52705 * 11 10 9 25 25 H 1.09001 * 113.00045 * 18.17280 * 15 14 12 26 26 H 1.09002 * 113.86467 * 337.34402 * 16 15 14 27 27 H 1.09002 * 113.86244 * 109.04643 * 16 15 14 28 28 H 1.08996 * 113.86563 * 221.65699 * 18 17 16 29 29 H 1.09005 * 113.98024 * 89.96731 * 18 17 16 30 30 H 1.09003 * 110.36883 * 322.92426 * 19 9 7 31 31 H 1.09002 * 110.37021 * 85.24693 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6037 1.9851 -1.3948 5 1 3.4909 1.4729 0.8033 6 1 1.3988 2.6809 0.5914 7 6 2.0101 -1.2022 0.0005 8 1 3.0835 -1.2061 0.1206 9 7 1.3339 -2.3833 -0.1513 10 6 -0.0986 -2.5176 -0.4534 11 6 -0.4047 -4.0266 -0.5603 12 6 0.9858 -4.6447 -0.8634 13 1 1.2197 -4.5796 -1.9261 14 8 1.0552 -5.9974 -0.4084 15 6 2.0341 -6.7887 -1.0847 16 6 1.4357 -7.9229 -1.9382 17 8 2.4887 -8.7396 -1.3879 18 6 2.6346 -7.9110 -0.2171 19 6 1.9203 -3.7306 -0.0323 20 1 -0.4849 0.8401 0.0004 21 1 -0.6897 -2.0733 0.3473 22 1 -0.3254 -2.0274 -1.4002 23 1 -1.1007 -4.2245 -1.3754 24 1 -0.7986 -4.4069 0.3822 25 1 2.7799 -6.1891 -1.6067 26 1 0.4353 -8.2262 -1.6295 27 1 1.5208 -7.7584 -3.0123 28 1 3.6705 -7.7371 0.0738 29 1 2.0012 -8.2092 0.6185 30 1 2.9289 -3.7432 -0.4456 31 1 1.9327 -4.0483 1.0103 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222686982.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:25 Heat of formation + Delta-G solvation = -27.203561 kcal Electronic energy + Delta-G solvation = -14405.120217 eV Core-core repulsion = 11882.075900 eV Total energy + Delta-G solvation = -2523.044317 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.37873 -37.97239 -35.58169 -32.20045 -29.42622 -28.47342 -26.96427 -26.61740 -24.35256 -20.89181 -20.42268 -19.99654 -17.41831 -16.98462 -16.37473 -15.91926 -15.05141 -14.52809 -14.37597 -13.52052 -13.14479 -12.73607 -12.65903 -12.15811 -12.02521 -11.59588 -11.40159 -10.95848 -10.86916 -10.63160 -10.28664 -10.13140 -9.83152 -9.74827 -9.73699 -9.16310 -8.64036 -6.86132 -5.73275 -3.09782 3.38919 3.43512 3.45619 3.61204 3.80266 4.29412 4.49197 4.88719 5.13649 5.31120 5.36339 5.38685 5.43720 5.49465 5.68610 5.72645 5.79798 5.89915 6.00199 6.22176 6.41076 6.48572 6.62680 6.67924 7.43631 7.51241 7.62902 7.78580 8.23253 9.17609 9.78448 10.44081 11.36995 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.067345 B = 0.006470 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.669326 B = 4326.460051 C = 4592.695690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.173 3.827 11 C -0.136 4.136 12 C 0.068 3.932 13 H 0.068 0.932 14 O -0.364 6.364 15 C 0.022 3.978 16 C 0.018 3.982 17 O -0.381 6.381 18 C 0.036 3.964 19 C 0.117 3.883 20 H 0.253 0.747 21 H 0.064 0.936 22 H 0.033 0.967 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.037 0.963 31 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.891 -12.034 -2.606 12.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.048 3.952 11 C -0.174 4.174 12 C 0.010 3.990 13 H 0.086 0.914 14 O -0.282 6.282 15 C -0.037 4.037 16 C -0.059 4.059 17 O -0.300 6.300 18 C -0.040 4.040 19 C -0.009 4.009 20 H 0.064 0.936 21 H 0.082 0.918 22 H 0.051 0.949 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.843 -12.108 -2.529 12.506 hybrid contribution 0.514 1.155 -0.166 1.275 sum 2.357 -10.953 -2.695 11.524 Atomic orbital electron populations 1.69948 1.04967 1.25198 1.56618 1.24830 0.95698 0.97786 1.02083 0.86117 0.78586 0.83260 0.77675 1.21524 1.20675 1.21624 1.19049 0.90914 0.82513 1.43473 0.90431 1.44361 1.05586 0.99697 1.83385 1.21232 0.85597 0.87960 1.00366 1.22965 0.94525 0.98660 1.01289 1.23548 0.98279 0.80021 0.97188 0.91420 1.87973 1.56393 1.22355 1.61463 1.25654 0.91802 0.92418 0.93820 1.24627 0.92848 0.88733 0.99739 1.89664 1.53923 1.51014 1.35376 1.24334 1.02009 0.87197 0.90507 1.21943 0.95121 0.86756 0.97125 0.93648 0.91816 0.94904 0.91824 0.91317 0.88393 0.89359 0.89056 0.88657 0.89224 0.94505 0.95460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.10 10.48 55.49 0.58 -26.52 16 2 C -0.01 -0.21 5.45 -17.43 -0.09 -0.31 16 3 Si 0.91 22.06 29.56 -169.99 -5.02 17.04 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.51 10.26 -15.06 -0.15 -6.66 16 8 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 9 N -0.60 -15.65 3.39 -170.06 -0.58 -16.23 16 10 C 0.17 4.23 5.43 -3.06 -0.02 4.22 16 11 C -0.14 -2.61 6.68 -24.89 -0.17 -2.78 16 12 C 0.07 1.22 3.35 -24.59 -0.08 1.14 16 13 H 0.07 1.16 7.86 -51.93 -0.41 0.76 16 14 O -0.36 -5.88 10.18 -35.23 -0.36 -6.23 16 15 C 0.02 0.29 4.45 -25.65 -0.11 0.18 16 16 C 0.02 0.21 9.05 37.61 0.34 0.55 16 17 O -0.38 -5.08 12.45 -35.23 -0.44 -5.52 16 18 C 0.04 0.43 9.05 37.61 0.34 0.77 16 19 C 0.12 2.49 6.97 -2.54 -0.02 2.48 16 20 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 21 H 0.06 1.73 6.99 -51.93 -0.36 1.37 16 22 H 0.03 0.86 7.92 -51.93 -0.41 0.45 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 25 H 0.10 1.24 7.81 -51.93 -0.41 0.83 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 259.94 15.07 3.92 3.92 Total: -1.00 -30.74 259.94 -6.38 -37.13 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -4.52 Total: -3.17 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 0.03 Total: -0.41 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.00 Total: -42.74 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.80 Total: -11.75 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.74 -6.38 -37.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222686982.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.924 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds