Wall clock time and date at job start Sun Mar 29 2020 22:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00456 * 2 1 4 4 H 1.48507 * 109.47081 * 264.98937 * 3 2 1 5 5 H 1.48502 * 109.47308 * 144.98913 * 3 2 1 6 6 H 1.48499 * 109.47100 * 24.98684 * 3 2 1 7 7 C 1.38812 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00054 * 187.37604 * 7 2 1 9 9 N 1.36941 * 120.00565 * 7.38012 * 7 2 1 10 10 C 1.47021 * 125.64137 * 6.32996 * 9 7 2 11 11 C 1.54340 * 107.26384 * 178.85109 * 10 9 7 12 12 C 1.55153 * 103.01975 * 338.14806 * 11 10 9 13 13 H 1.09006 * 111.03574 * 277.21639 * 12 11 10 14 14 O 1.42895 * 111.00660 * 153.37900 * 12 11 10 15 15 C 1.42895 * 114.00333 * 156.34703 * 14 12 11 16 16 C 1.54037 * 113.81816 * 246.18520 * 15 14 12 17 17 O 1.44173 * 85.52123 * 223.19555 * 16 15 14 18 18 C 1.44180 * 93.33989 * 24.19241 * 17 16 15 19 19 C 1.47414 * 125.65304 * 186.64665 * 9 7 2 20 20 H 0.97004 * 119.99432 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.88851 * 298.40020 * 10 9 7 22 22 H 1.09007 * 109.88284 * 59.56743 * 10 9 7 23 23 H 1.08998 * 110.84923 * 219.67449 * 11 10 9 24 24 H 1.09006 * 110.66068 * 96.52705 * 11 10 9 25 25 H 1.09001 * 113.00045 * 18.17280 * 15 14 12 26 26 H 1.09002 * 113.86467 * 337.34402 * 16 15 14 27 27 H 1.09002 * 113.86244 * 109.04643 * 16 15 14 28 28 H 1.08996 * 113.86563 * 221.65699 * 18 17 16 29 29 H 1.09005 * 113.98024 * 89.96731 * 18 17 16 30 30 H 1.09003 * 110.36883 * 322.92426 * 19 9 7 31 31 H 1.09002 * 110.37021 * 85.24693 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6037 1.9851 -1.3948 5 1 3.4909 1.4729 0.8033 6 1 1.3988 2.6809 0.5914 7 6 2.0101 -1.2022 0.0005 8 1 3.0835 -1.2061 0.1206 9 7 1.3339 -2.3833 -0.1513 10 6 -0.0986 -2.5176 -0.4534 11 6 -0.4047 -4.0266 -0.5603 12 6 0.9858 -4.6447 -0.8634 13 1 1.2197 -4.5796 -1.9261 14 8 1.0552 -5.9974 -0.4084 15 6 2.0341 -6.7887 -1.0847 16 6 1.4357 -7.9229 -1.9382 17 8 2.4887 -8.7396 -1.3879 18 6 2.6346 -7.9110 -0.2171 19 6 1.9203 -3.7306 -0.0323 20 1 -0.4849 0.8401 0.0004 21 1 -0.6897 -2.0733 0.3473 22 1 -0.3254 -2.0274 -1.4002 23 1 -1.1007 -4.2245 -1.3754 24 1 -0.7986 -4.4069 0.3822 25 1 2.7799 -6.1891 -1.6067 26 1 0.4353 -8.2262 -1.6295 27 1 1.5208 -7.7584 -3.0123 28 1 3.6705 -7.7371 0.0738 29 1 2.0012 -8.2092 0.6185 30 1 2.9289 -3.7432 -0.4456 31 1 1.9327 -4.0483 1.0103 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222686982.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:25 Heat of formation + Delta-G solvation = -48.755950 kcal Electronic energy + Delta-G solvation = -14406.054799 eV Core-core repulsion = 11882.075900 eV Total energy + Delta-G solvation = -2523.978899 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.38719 -39.50341 -37.13006 -34.16929 -31.21416 -29.73613 -28.60938 -27.51854 -26.31555 -22.27341 -21.95145 -21.55033 -19.01437 -18.53729 -17.38675 -16.94972 -16.80884 -16.19083 -15.97691 -15.03245 -14.73726 -14.25709 -13.90691 -13.72951 -13.49370 -13.08235 -12.97300 -12.71996 -12.53880 -12.04340 -12.03175 -11.94331 -11.72591 -11.42278 -10.75902 -10.72664 -10.45590 -8.93778 -7.86587 -5.26082 1.46258 1.48750 1.56927 2.43253 2.60519 2.68992 3.29436 3.32839 3.71771 3.78039 3.98111 4.06743 4.15635 4.27658 4.43366 4.55671 4.59949 4.67229 4.80534 4.92233 4.97196 5.04039 5.08796 5.11193 5.40745 5.60365 5.71725 6.14134 6.26637 7.05955 7.72591 8.37087 9.22286 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.067345 B = 0.006470 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.669326 B = 4326.460051 C = 4592.695690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.064 4.064 3 Si 0.981 3.019 4 H -0.283 1.283 5 H -0.269 1.269 6 H -0.294 1.294 7 C -0.249 4.249 8 H 0.083 0.917 9 N -0.625 5.625 10 C 0.179 3.821 11 C -0.124 4.124 12 C 0.089 3.911 13 H 0.082 0.918 14 O -0.368 6.368 15 C 0.010 3.990 16 C 0.022 3.978 17 O -0.397 6.397 18 C 0.038 3.962 19 C 0.112 3.888 20 H 0.249 0.751 21 H 0.026 0.974 22 H 0.006 0.994 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 -13.082 -3.168 13.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.809 3.191 4 H -0.210 1.210 5 H -0.194 1.194 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.101 0.899 9 N -0.353 5.353 10 C 0.054 3.946 11 C -0.162 4.162 12 C 0.030 3.970 13 H 0.100 0.900 14 O -0.286 6.286 15 C -0.049 4.049 16 C -0.054 4.054 17 O -0.317 6.317 18 C -0.038 4.038 19 C -0.013 4.013 20 H 0.058 0.942 21 H 0.045 0.955 22 H 0.024 0.976 23 H 0.109 0.891 24 H 0.090 0.910 25 H 0.123 0.877 26 H 0.112 0.888 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 2.748 -13.198 -3.091 13.830 hybrid contribution 0.270 1.405 0.036 1.432 sum 3.018 -11.792 -3.055 12.550 Atomic orbital electron populations 1.70169 1.06425 1.25552 1.57706 1.25711 0.96608 1.01207 1.02247 0.85056 0.77544 0.78715 0.77768 1.20981 1.19358 1.21997 1.19462 0.91509 0.83800 1.42962 0.89922 1.44675 1.06377 1.00941 1.83267 1.20996 0.84778 0.91333 0.97480 1.22794 0.96027 0.94716 1.02668 1.23192 0.96053 0.80593 0.97161 0.89979 1.87965 1.57453 1.21111 1.62095 1.25964 0.91729 0.92494 0.94664 1.24725 0.92760 0.87326 1.00637 1.89659 1.54478 1.51558 1.35984 1.24449 1.03078 0.86074 0.90216 1.22111 0.96336 0.85404 0.97472 0.94199 0.95543 0.97581 0.89075 0.90976 0.87724 0.88807 0.87214 0.87028 0.88799 0.93455 0.96129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.39 10.48 21.65 0.23 -57.16 16 2 C -0.06 -3.68 5.45 84.86 0.46 -3.22 16 3 Si 0.98 45.59 29.56 68.60 2.03 47.62 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.25 -14.06 10.26 84.03 0.86 -13.20 16 8 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 9 N -0.62 -32.64 3.39 -691.96 -2.35 -34.98 16 10 C 0.18 8.91 5.43 86.73 0.47 9.38 16 11 C -0.12 -4.59 6.68 31.79 0.21 -4.38 16 12 C 0.09 3.01 3.35 31.98 0.11 3.12 16 13 H 0.08 2.59 7.86 -2.38 -0.02 2.57 16 14 O -0.37 -10.92 10.18 -148.98 -1.52 -12.44 16 15 C 0.01 0.23 4.45 31.30 0.14 0.37 16 16 C 0.02 0.45 9.05 72.27 0.65 1.11 16 17 O -0.40 -9.58 12.45 -148.98 -1.86 -11.44 16 18 C 0.04 0.81 9.05 72.28 0.65 1.46 16 19 C 0.11 4.67 6.97 86.86 0.61 5.27 16 20 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 21 H 0.03 1.49 6.99 -2.39 -0.02 1.48 16 22 H 0.01 0.32 7.92 -2.38 -0.02 0.30 16 23 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 24 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 25 H 0.10 2.33 7.81 -2.39 -0.02 2.31 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -66.00 259.94 1.80 -64.20 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.10 Total: 4.28 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 4.17 Total: -0.09 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -2.12 Total: -92.14 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -3.37 Total: -23.87 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -66.00 1.80 -64.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222686982.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.446 kcal (2) G-P(sol) polarization free energy of solvation -66.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds