Wall clock time and date at job start Sun Mar 29 2020 21:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46505 * 2 1 4 4 N 1.46896 * 109.47003 * 119.99440 * 2 1 3 5 5 C 1.53003 * 109.47390 * 239.99931 * 2 1 3 6 6 N 1.46901 * 109.46907 * 62.96635 * 5 2 1 7 7 C 1.46839 * 111.00388 * 52.08139 * 6 5 2 8 8 C 1.53029 * 109.52730 * 185.83725 * 7 6 5 9 9 C 1.53126 * 109.27830 * 300.82093 * 8 7 6 10 10 C 1.50692 * 109.57434 * 177.59028 * 9 8 7 11 11 H 1.08000 * 119.99758 * 240.28006 * 10 9 8 12 12 C 1.37874 * 120.00224 * 60.28811 * 10 9 8 13 13 N 1.31512 * 120.00464 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 120.00120 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46781 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47103 * 119.99430 * 14 12 10 17 17 H 1.48494 * 109.47048 * 239.99563 * 14 12 10 18 18 C 1.53117 * 109.15733 * 57.65064 * 9 8 7 19 19 C 1.46850 * 110.99557 * 176.28816 * 6 5 2 20 20 H 1.08997 * 109.47344 * 300.00128 * 1 2 3 21 21 H 1.08999 * 109.47159 * 60.00841 * 1 2 3 22 22 H 1.09003 * 109.46505 * 179.97438 * 1 2 3 23 23 H 1.00905 * 110.99892 * 55.09300 * 4 2 1 24 24 H 1.00903 * 111.00118 * 179.04824 * 4 2 1 25 25 H 1.08997 * 109.46868 * 182.96794 * 5 2 1 26 26 H 1.09000 * 109.46772 * 302.96835 * 5 2 1 27 27 H 1.09001 * 109.46272 * 305.85699 * 7 6 5 28 28 H 1.09005 * 109.46415 * 65.81360 * 7 6 5 29 29 H 1.09000 * 109.50846 * 180.87871 * 8 7 6 30 30 H 1.08995 * 109.53813 * 60.77967 * 8 7 6 31 31 H 1.09005 * 109.51740 * 297.75048 * 9 8 7 32 32 H 0.96992 * 120.00671 * 180.02562 * 13 12 10 33 33 H 1.09007 * 109.49887 * 182.40959 * 18 9 8 34 34 H 1.08999 * 109.53769 * 62.31189 * 18 9 8 35 35 H 1.08995 * 109.46304 * 294.17915 * 19 6 5 36 36 H 1.09001 * 109.46211 * 54.15682 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0401 -0.7213 -1.2492 6 7 1.6099 0.0114 -2.4476 7 6 1.9788 1.4299 -2.3580 8 6 1.3901 2.1877 -3.5500 9 6 1.9280 1.5823 -4.8496 10 6 1.3069 2.2852 -6.0290 11 1 0.7172 1.7270 -6.7410 12 6 1.4917 3.6409 -6.1992 13 7 2.2096 4.3208 -5.3320 14 14 0.7223 4.5121 -7.6617 15 1 -0.0306 3.5302 -8.4827 16 1 -0.2040 5.5673 -7.1781 17 1 1.7903 5.1313 -8.4869 18 6 1.5722 0.0938 -4.8955 19 6 2.1557 -0.6034 -3.6644 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.6320 -1.6217 1.2641 24 1 3.0282 -0.7194 1.2150 25 1 3.1288 -0.7675 -1.2229 26 1 1.6340 -1.7324 -1.2762 27 1 1.5867 1.8493 -1.4315 28 1 3.0647 1.5241 -2.3680 29 1 1.6772 3.2376 -3.4916 30 1 0.3034 2.1062 -3.5332 31 1 3.0112 1.6992 -4.8848 32 1 2.3392 5.2745 -5.4516 33 1 1.9896 -0.3524 -5.7982 34 1 0.4884 -0.0220 -4.8998 35 1 3.2407 -0.4997 -3.6684 36 1 1.8919 -1.6607 -3.6869 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235725054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:18 Heat of formation + Delta-G solvation = -12.550387 kcal Electronic energy + Delta-G solvation = -14849.827583 eV Core-core repulsion = 12560.970432 eV Total energy + Delta-G solvation = -2288.857151 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.69555 -35.95368 -33.36039 -31.10715 -29.85325 -28.61010 -26.59001 -24.33814 -22.35471 -21.65017 -19.86464 -18.54703 -16.45197 -16.11753 -15.41522 -14.71087 -14.45602 -14.17486 -13.55183 -13.06927 -12.88500 -12.44407 -12.21116 -11.98728 -11.55797 -11.42190 -11.18409 -10.95069 -10.73015 -10.59939 -10.43707 -10.19961 -9.96833 -9.42682 -8.94963 -8.83009 -8.56209 -8.27636 -7.74394 -5.95750 -4.01005 3.31418 3.39522 3.43647 4.34961 4.46794 4.73642 4.98212 5.22158 5.34790 5.50482 5.68746 5.77782 5.81492 5.93058 6.09400 6.12750 6.22293 6.29870 6.32269 6.50950 6.63863 6.64113 6.86687 7.06613 7.11070 7.18835 7.40599 7.46104 7.63035 7.70573 7.84996 8.06493 8.17766 8.50179 9.02962 9.63451 11.10512 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054983 B = 0.007161 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.121456 B = 3909.197595 C = 4108.607479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.081 3.919 3 H 0.086 0.914 4 N -0.844 5.844 5 C 0.024 3.976 6 N -0.528 5.528 7 C 0.051 3.949 8 C -0.103 4.103 9 C 0.047 3.953 10 C -0.509 4.509 11 H 0.055 0.945 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.889 3.111 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.106 4.106 19 C 0.060 3.940 20 H 0.052 0.948 21 H 0.076 0.924 22 H 0.046 0.954 23 H 0.336 0.664 24 H 0.337 0.663 25 H 0.021 0.979 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.020 0.980 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.019 0.981 32 H 0.258 0.742 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.022 0.978 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 -8.436 8.391 11.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.030 4.030 3 H 0.104 0.896 4 N -0.372 5.372 5 C -0.107 4.107 6 N -0.253 5.253 7 C -0.076 4.076 8 C -0.142 4.142 9 C 0.029 3.971 10 C -0.547 4.547 11 H 0.073 0.927 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.717 3.283 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.144 4.144 19 C -0.068 4.068 20 H 0.071 0.929 21 H 0.095 0.905 22 H 0.066 0.934 23 H 0.148 0.852 24 H 0.149 0.851 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.066 -7.688 8.807 11.739 hybrid contribution 1.043 -0.173 -1.439 1.786 sum -0.023 -7.861 7.368 10.774 Atomic orbital electron populations 1.21696 0.93689 1.01573 1.02307 1.21639 0.96651 0.98382 0.86341 0.89632 1.59103 1.13044 1.24088 1.40936 1.22973 0.96971 0.98304 0.92429 1.62037 1.59433 1.03087 1.00760 1.22392 0.97364 0.87253 1.00607 1.21652 0.98761 1.01060 0.92693 1.18691 0.96042 0.88930 0.93485 1.21245 1.31677 0.93156 1.08649 0.92719 1.24971 0.95215 0.97617 0.96245 1.69882 1.39908 1.07807 1.35581 0.86581 0.79084 0.79667 0.82926 1.19841 1.21062 1.21165 1.21672 1.00191 0.98698 0.93795 1.22117 0.96197 0.97296 0.91172 0.92907 0.90520 0.93449 0.85224 0.85109 0.96069 0.91761 0.91970 0.96209 0.88992 0.93808 0.96261 0.93165 0.93269 0.92465 0.96001 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.28 37.16 0.34 -1.45 16 2 C 0.08 1.08 2.98 -67.71 -0.20 0.88 16 3 H 0.09 1.27 6.01 -51.93 -0.31 0.96 16 4 N -0.84 -9.39 9.26 -4.66 -0.04 -9.43 16 5 C 0.02 0.34 4.82 -3.82 -0.02 0.32 16 6 N -0.53 -9.33 4.13 -234.68 -0.97 -10.30 16 7 C 0.05 1.00 5.04 -3.84 -0.02 0.98 16 8 C -0.10 -2.45 5.12 -26.65 -0.14 -2.58 16 9 C 0.05 1.18 2.16 -91.65 -0.20 0.98 16 10 C -0.51 -14.08 8.56 -34.45 -0.30 -14.37 16 11 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 13 N -0.89 -25.56 11.37 55.43 0.63 -24.93 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 C -0.11 -2.25 5.32 -26.65 -0.14 -2.39 16 19 C 0.06 1.10 5.46 -3.83 -0.02 1.08 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.08 1.16 7.69 -51.93 -0.40 0.76 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.34 3.24 8.98 -39.29 -0.35 2.89 16 24 H 0.34 3.36 9.03 -39.29 -0.35 3.00 16 25 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 1.12 5.75 -51.93 -0.30 0.83 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 30 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 278.90 15.07 4.20 4.20 Total: -1.00 -28.12 278.90 -8.21 -36.33 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.23 Total: 2.72 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -0.78 Total: -14.97 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.38 Total: -44.66 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.12 -8.21 -36.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235725054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.780 kcal (2) G-P(sol) polarization free energy of solvation -28.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds