Wall clock time and date at job start Sun Mar 29 2020 21:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46505 * 2 1 4 4 N 1.46896 * 109.47003 * 119.99440 * 2 1 3 5 5 C 1.53003 * 109.47390 * 239.99931 * 2 1 3 6 6 N 1.46901 * 109.46907 * 62.96635 * 5 2 1 7 7 C 1.46839 * 111.00388 * 52.08139 * 6 5 2 8 8 C 1.53029 * 109.52730 * 185.83725 * 7 6 5 9 9 C 1.53126 * 109.27830 * 300.82093 * 8 7 6 10 10 C 1.50692 * 109.57434 * 177.59028 * 9 8 7 11 11 H 1.08000 * 119.99758 * 240.28006 * 10 9 8 12 12 C 1.37874 * 120.00224 * 60.28811 * 10 9 8 13 13 N 1.31512 * 120.00464 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 120.00120 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46781 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47103 * 119.99430 * 14 12 10 17 17 H 1.48494 * 109.47048 * 239.99563 * 14 12 10 18 18 C 1.53117 * 109.15733 * 57.65064 * 9 8 7 19 19 C 1.46850 * 110.99557 * 176.28816 * 6 5 2 20 20 H 1.08997 * 109.47344 * 300.00128 * 1 2 3 21 21 H 1.08999 * 109.47159 * 60.00841 * 1 2 3 22 22 H 1.09003 * 109.46505 * 179.97438 * 1 2 3 23 23 H 1.00905 * 110.99892 * 55.09300 * 4 2 1 24 24 H 1.00903 * 111.00118 * 179.04824 * 4 2 1 25 25 H 1.08997 * 109.46868 * 182.96794 * 5 2 1 26 26 H 1.09000 * 109.46772 * 302.96835 * 5 2 1 27 27 H 1.09001 * 109.46272 * 305.85699 * 7 6 5 28 28 H 1.09005 * 109.46415 * 65.81360 * 7 6 5 29 29 H 1.09000 * 109.50846 * 180.87871 * 8 7 6 30 30 H 1.08995 * 109.53813 * 60.77967 * 8 7 6 31 31 H 1.09005 * 109.51740 * 297.75048 * 9 8 7 32 32 H 0.96992 * 120.00671 * 180.02562 * 13 12 10 33 33 H 1.09007 * 109.49887 * 182.40959 * 18 9 8 34 34 H 1.08999 * 109.53769 * 62.31189 * 18 9 8 35 35 H 1.08995 * 109.46304 * 294.17915 * 19 6 5 36 36 H 1.09001 * 109.46211 * 54.15682 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0401 -0.7213 -1.2492 6 7 1.6099 0.0114 -2.4476 7 6 1.9788 1.4299 -2.3580 8 6 1.3901 2.1877 -3.5500 9 6 1.9280 1.5823 -4.8496 10 6 1.3069 2.2852 -6.0290 11 1 0.7172 1.7270 -6.7410 12 6 1.4917 3.6409 -6.1992 13 7 2.2096 4.3208 -5.3320 14 14 0.7223 4.5121 -7.6617 15 1 -0.0306 3.5302 -8.4827 16 1 -0.2040 5.5673 -7.1781 17 1 1.7903 5.1313 -8.4869 18 6 1.5722 0.0938 -4.8955 19 6 2.1557 -0.6034 -3.6644 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.6320 -1.6217 1.2641 24 1 3.0282 -0.7194 1.2150 25 1 3.1288 -0.7675 -1.2229 26 1 1.6340 -1.7324 -1.2762 27 1 1.5867 1.8493 -1.4315 28 1 3.0647 1.5241 -2.3680 29 1 1.6772 3.2376 -3.4916 30 1 0.3034 2.1062 -3.5332 31 1 3.0112 1.6992 -4.8848 32 1 2.3392 5.2745 -5.4516 33 1 1.9896 -0.3524 -5.7982 34 1 0.4884 -0.0220 -4.8998 35 1 3.2407 -0.4997 -3.6684 36 1 1.8919 -1.6607 -3.6869 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235725054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:18 Heat of formation + Delta-G solvation = -32.059458 kcal Electronic energy + Delta-G solvation = -14850.673560 eV Core-core repulsion = 12560.970432 eV Total energy + Delta-G solvation = -2289.703128 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.16361 -37.31572 -35.12841 -32.88571 -31.52979 -29.69807 -28.23555 -25.98240 -23.98079 -23.30264 -21.13504 -20.27877 -18.46329 -17.28945 -16.83914 -16.34807 -16.02807 -15.53214 -14.91750 -14.70503 -14.51842 -14.07002 -13.91684 -13.35452 -13.03534 -12.85698 -12.63171 -12.60078 -12.42468 -12.15176 -11.97193 -11.88267 -11.78130 -11.32479 -10.81477 -10.64771 -10.38615 -9.64303 -9.18593 -8.08197 -6.21661 1.39903 1.41809 1.53217 2.43777 3.01000 3.18772 3.75093 3.86399 4.07709 4.23140 4.28974 4.39435 4.42331 4.54129 4.70759 4.77288 4.79491 4.90480 4.95821 5.07687 5.08450 5.22178 5.29167 5.32969 5.45866 5.56100 5.62845 5.99142 6.01969 6.16172 6.29168 6.37086 6.40992 6.62345 6.90227 7.46307 8.96641 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054983 B = 0.007161 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.121456 B = 3909.197595 C = 4108.607479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.088 3.912 3 H 0.068 0.932 4 N -0.841 5.841 5 C 0.028 3.972 6 N -0.532 5.532 7 C 0.065 3.935 8 C -0.094 4.094 9 C 0.043 3.957 10 C -0.532 4.532 11 H 0.051 0.949 12 C 0.011 3.989 13 N -0.919 5.919 14 Si 0.954 3.046 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.281 1.281 18 C -0.099 4.099 19 C 0.065 3.935 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.348 0.652 24 H 0.346 0.654 25 H 0.025 0.975 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.008 0.992 29 H 0.059 0.941 30 H 0.032 0.968 31 H -0.015 1.015 32 H 0.260 0.740 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.018 0.982 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 -9.797 9.039 13.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.024 4.024 3 H 0.086 0.914 4 N -0.371 5.371 5 C -0.102 4.102 6 N -0.257 5.257 7 C -0.062 4.062 8 C -0.133 4.133 9 C 0.024 3.976 10 C -0.570 4.570 11 H 0.069 0.931 12 C -0.187 4.187 13 N -0.559 5.559 14 Si 0.780 3.220 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.137 4.137 19 C -0.063 4.063 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.161 0.839 24 H 0.159 0.841 25 H 0.043 0.957 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.004 0.996 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.513 -9.073 9.467 13.200 hybrid contribution 1.198 0.229 -1.616 2.025 sum -0.315 -8.844 7.851 11.830 Atomic orbital electron populations 1.21631 0.93633 1.02151 1.01418 1.21473 0.96596 0.97655 0.86688 0.91368 1.59033 1.13841 1.24873 1.39312 1.23067 0.97356 0.98762 0.91037 1.61983 1.59617 1.02063 1.02014 1.22121 0.96261 0.88585 0.99254 1.21406 0.97938 0.99831 0.94075 1.18676 0.93694 0.91713 0.93512 1.21609 1.31950 0.93832 1.09598 0.93106 1.25750 0.95683 0.98383 0.98873 1.70020 1.40774 1.08019 1.37040 0.85572 0.78290 0.78492 0.79695 1.19196 1.20573 1.20696 1.21536 1.00029 0.96269 0.95858 1.22054 0.95693 0.98510 0.90016 0.92538 0.92660 0.92131 0.83891 0.84145 0.95667 0.89844 0.90352 0.97330 0.92209 0.94952 0.99646 0.93097 0.92938 0.92892 0.96424 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.28 71.98 0.67 -2.52 16 2 C 0.09 2.13 2.98 44.92 0.13 2.26 16 3 H 0.07 1.91 6.01 -2.39 -0.01 1.90 16 4 N -0.84 -16.26 9.26 -168.67 -1.56 -17.83 16 5 C 0.03 0.72 4.82 86.30 0.42 1.13 16 6 N -0.53 -17.94 4.13 -896.39 -3.70 -21.64 16 7 C 0.07 2.56 5.04 86.32 0.44 3.00 16 8 C -0.09 -4.57 5.12 30.65 0.16 -4.42 16 9 C 0.04 2.19 2.16 -11.46 -0.02 2.17 16 10 C -0.53 -30.01 8.56 25.60 0.22 -29.79 16 11 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 12 C 0.01 0.64 5.31 84.65 0.45 1.09 16 13 N -0.92 -53.93 11.37 21.45 0.24 -53.69 16 14 Si 0.95 44.31 29.54 68.60 2.03 46.33 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 18 C -0.10 -4.18 5.32 30.64 0.16 -4.01 16 19 C 0.07 2.27 5.46 86.32 0.47 2.74 16 20 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 21 H 0.05 1.59 7.69 -2.39 -0.02 1.58 16 22 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.35 5.50 8.98 -89.69 -0.81 4.70 16 24 H 0.35 5.89 9.03 -89.69 -0.81 5.08 16 25 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.08 2.81 5.75 -2.39 -0.01 2.80 16 28 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 29 H 0.06 3.28 6.17 -2.39 -0.01 3.26 16 30 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 31 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 32 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 2.51 8.12 -2.39 -0.02 2.49 16 Total: -1.00 -60.75 278.90 -0.46 -61.21 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -0.56 Total: 13.96 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 3.09 Total: -28.36 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -5.02 Total: -93.15 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -60.75 -0.46 -61.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235725054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.154 kcal (2) G-P(sol) polarization free energy of solvation -60.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds