Wall clock time and date at job start Sun Mar 29 2020 21:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47136 * 2 1 4 4 N 1.46898 * 109.47512 * 119.99537 * 2 1 3 5 5 C 1.53003 * 109.47472 * 239.99743 * 2 1 3 6 6 N 1.46900 * 109.47203 * 179.46300 * 5 2 1 7 7 C 1.46849 * 110.99702 * 78.41767 * 6 5 2 8 8 C 1.53038 * 109.51969 * 174.16077 * 7 6 5 9 9 C 1.53120 * 109.28244 * 59.17663 * 8 7 6 10 10 C 1.53117 * 109.15855 * 302.34663 * 9 8 7 11 11 H 1.09004 * 109.50033 * 297.67516 * 10 9 8 12 12 C 1.50697 * 109.50115 * 177.59500 * 10 9 8 13 13 H 1.07995 * 119.99930 * 275.08926 * 12 10 9 14 14 C 1.37885 * 119.99847 * 95.09835 * 12 10 9 15 15 N 1.31510 * 119.99578 * 187.03938 * 14 12 10 16 16 Si 1.86796 * 120.00223 * 7.03198 * 14 12 10 17 17 H 1.48500 * 109.47242 * 87.33287 * 16 14 12 18 18 H 1.48501 * 109.47402 * 207.33964 * 16 14 12 19 19 H 1.48502 * 109.46886 * 327.33693 * 16 14 12 20 20 C 1.46840 * 111.00202 * 314.20102 * 6 5 2 21 21 H 1.09000 * 109.47194 * 300.00159 * 1 2 3 22 22 H 1.08996 * 109.46716 * 60.00335 * 1 2 3 23 23 H 1.09002 * 109.46422 * 179.97438 * 1 2 3 24 24 H 1.00907 * 110.99658 * 74.02228 * 4 2 1 25 25 H 1.00899 * 111.00740 * 197.98064 * 4 2 1 26 26 H 1.08996 * 109.47186 * 299.46806 * 5 2 1 27 27 H 1.09002 * 109.46881 * 59.46248 * 5 2 1 28 28 H 1.09001 * 109.45755 * 294.16983 * 7 6 5 29 29 H 1.09001 * 109.46625 * 54.15218 * 7 6 5 30 30 H 1.09003 * 109.50028 * 179.11934 * 8 7 6 31 31 H 1.09000 * 109.49897 * 299.22755 * 8 7 6 32 32 H 1.09000 * 109.51918 * 62.24917 * 9 8 7 33 33 H 1.08993 * 109.52346 * 182.37639 * 9 8 7 34 34 H 0.97004 * 119.99921 * 180.02562 * 15 14 12 35 35 H 1.08993 * 109.46681 * 305.85821 * 20 6 5 36 36 H 1.09006 * 109.45954 * 65.82353 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 2.0401 -0.7213 -1.2492 6 7 3.5091 -0.7100 -1.2557 7 6 4.0471 -1.7286 -0.3448 8 6 5.5698 -1.7872 -0.4855 9 6 6.1616 -0.4146 -0.1531 10 6 5.5487 0.6355 -1.0837 11 1 5.8097 0.4033 -2.1163 12 6 6.0816 1.9985 -0.7243 13 1 5.6131 2.5712 0.0625 14 6 7.1671 2.5146 -1.4000 15 7 7.7183 3.6387 -0.9976 16 14 7.8548 1.6168 -2.8867 17 1 7.1303 2.0532 -4.1073 18 1 9.2993 1.9302 -3.0298 19 1 7.6815 0.1532 -2.7050 20 6 4.0266 0.6240 -0.9259 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8958 -1.6904 1.1168 25 1 2.9850 -0.4617 1.3815 26 1 1.6846 -1.7517 -1.2444 27 1 1.6689 -0.2131 -2.1392 28 1 3.7868 -1.4713 0.6819 29 1 3.6217 -2.7005 -0.5948 30 1 5.9703 -2.5323 0.2020 31 1 5.8306 -2.0579 -1.5086 32 1 5.9340 -0.1610 0.8823 33 1 7.2422 -0.4403 -0.2928 34 1 8.4817 4.0020 -1.4732 35 1 3.5862 1.3607 -1.5976 36 1 3.7664 0.8701 0.1037 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235767643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:49 Heat of formation + Delta-G solvation = 1.059457 kcal Electronic energy + Delta-G solvation = -15171.705083 eV Core-core repulsion = 12883.438099 eV Total energy + Delta-G solvation = -2288.266984 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.37814 -35.70641 -32.92674 -31.67766 -30.43722 -29.22707 -25.93238 -25.09087 -22.58801 -21.18252 -20.30330 -18.83409 -16.90815 -16.29766 -15.33293 -14.77914 -14.45375 -14.00537 -13.89246 -13.29191 -12.88408 -12.69323 -12.52894 -12.14281 -11.91192 -11.52290 -11.35395 -11.20776 -11.02505 -10.77478 -10.54750 -10.20950 -9.81569 -9.54276 -9.37592 -9.00688 -8.95123 -8.48586 -7.45057 -6.08160 -4.07221 3.31113 3.39204 3.43403 4.37057 4.43850 4.60483 4.96638 5.21183 5.32726 5.37849 5.44605 5.51194 5.60547 5.77758 5.86971 5.94265 6.00209 6.13120 6.14326 6.22788 6.31124 6.38171 6.45727 6.66072 6.80388 6.89390 7.20680 7.28541 7.44988 7.49868 7.57075 7.60385 7.86088 8.52333 8.96927 9.55934 11.05028 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039593 B = 0.009297 C = 0.008608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.031584 B = 3010.972103 C = 3251.924756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.047 3.953 3 H 0.087 0.913 4 N -0.847 5.847 5 C 0.023 3.977 6 N -0.541 5.541 7 C 0.043 3.957 8 C -0.121 4.121 9 C -0.112 4.112 10 C 0.019 3.981 11 H 0.040 0.960 12 C -0.513 4.513 13 H 0.071 0.929 14 C 0.072 3.928 15 N -0.900 5.900 16 Si 0.878 3.122 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.263 1.263 20 C 0.068 3.932 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.335 0.665 25 H 0.348 0.652 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.672 -10.288 0.353 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.066 4.066 3 H 0.105 0.895 4 N -0.383 5.383 5 C -0.107 4.107 6 N -0.265 5.265 7 C -0.086 4.086 8 C -0.159 4.159 9 C -0.150 4.150 10 C 0.000 4.000 11 H 0.058 0.942 12 C -0.552 4.552 13 H 0.089 0.911 14 C -0.130 4.130 15 N -0.538 5.538 16 Si 0.705 3.295 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.187 1.187 20 C -0.059 4.059 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.148 0.852 25 H 0.167 0.833 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.900 -9.837 0.242 13.958 hybrid contribution 0.867 -0.608 -0.666 1.251 sum -9.033 -10.445 -0.424 13.816 Atomic orbital electron populations 1.21714 0.94820 1.01388 1.01574 1.22174 0.95753 0.99625 0.89057 0.89506 1.59037 1.27166 1.12867 1.39191 1.22954 0.88986 1.00367 0.98389 1.62253 1.05319 1.07074 1.51843 1.22483 0.96470 0.94770 0.94854 1.21697 0.94088 0.98899 1.01245 1.21864 0.99754 0.93173 1.00229 1.19185 0.90039 0.94951 0.95863 0.94233 1.20953 1.14069 1.00083 1.20048 0.91127 1.25052 0.96036 0.94711 0.97157 1.69923 1.23008 1.20627 1.40235 0.86835 0.77848 0.81023 0.83745 1.20267 1.21758 1.18716 1.22331 0.98188 0.87232 0.98170 0.92299 0.92537 0.93212 0.85151 0.83303 0.91664 0.90642 0.94218 0.92252 0.92930 0.92111 0.93235 0.92951 0.92688 0.91502 0.95308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.52 37.16 0.35 -1.20 16 2 C 0.05 0.63 2.85 -67.71 -0.19 0.44 16 3 H 0.09 1.36 6.42 -51.93 -0.33 1.02 16 4 N -0.85 -11.31 8.35 -4.66 -0.04 -11.35 16 5 C 0.02 0.32 5.18 -3.82 -0.02 0.30 16 6 N -0.54 -9.12 4.86 -234.67 -1.14 -10.26 16 7 C 0.04 0.65 4.66 -3.83 -0.02 0.63 16 8 C -0.12 -2.06 6.09 -26.65 -0.16 -2.22 16 9 C -0.11 -2.32 5.27 -26.61 -0.14 -2.46 16 10 C 0.02 0.44 1.96 -91.69 -0.18 0.26 16 11 H 0.04 0.97 5.15 -51.93 -0.27 0.70 16 12 C -0.51 -14.17 8.86 -34.44 -0.31 -14.48 16 13 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 16 Si 0.88 21.72 27.13 -169.99 -4.61 17.10 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.26 -6.26 6.62 56.52 0.37 -5.89 16 20 C 0.07 1.35 3.59 -3.84 -0.01 1.33 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.34 3.97 8.03 -39.29 -0.32 3.66 16 25 H 0.35 5.12 5.30 -39.29 -0.21 4.91 16 26 H 0.06 0.81 7.82 -51.93 -0.41 0.41 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.58 4.11 -51.93 -0.21 0.36 16 29 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.07 1.38 8.12 -51.93 -0.42 0.96 16 36 H 0.03 0.57 5.48 -51.93 -0.28 0.29 16 LS Contribution 268.46 15.07 4.05 4.05 Total: -1.00 -28.95 268.46 -7.58 -36.52 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.83 Total: 6.01 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -0.78 Total: -15.43 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.41 Total: -48.25 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.61 Total: 17.10 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.95 -7.58 -36.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235767643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.582 kcal (2) G-P(sol) polarization free energy of solvation -28.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds