Wall clock time and date at job start Sun Mar 29 2020 21:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47136 * 2 1 4 4 N 1.46898 * 109.47512 * 119.99537 * 2 1 3 5 5 C 1.53003 * 109.47472 * 239.99743 * 2 1 3 6 6 N 1.46900 * 109.47203 * 179.46300 * 5 2 1 7 7 C 1.46849 * 110.99702 * 78.41767 * 6 5 2 8 8 C 1.53038 * 109.51969 * 174.16077 * 7 6 5 9 9 C 1.53120 * 109.28244 * 59.17663 * 8 7 6 10 10 C 1.53117 * 109.15855 * 302.34663 * 9 8 7 11 11 H 1.09004 * 109.50033 * 297.67516 * 10 9 8 12 12 C 1.50697 * 109.50115 * 177.59500 * 10 9 8 13 13 H 1.07995 * 119.99930 * 275.08926 * 12 10 9 14 14 C 1.37885 * 119.99847 * 95.09835 * 12 10 9 15 15 N 1.31510 * 119.99578 * 187.03938 * 14 12 10 16 16 Si 1.86796 * 120.00223 * 7.03198 * 14 12 10 17 17 H 1.48500 * 109.47242 * 87.33287 * 16 14 12 18 18 H 1.48501 * 109.47402 * 207.33964 * 16 14 12 19 19 H 1.48502 * 109.46886 * 327.33693 * 16 14 12 20 20 C 1.46840 * 111.00202 * 314.20102 * 6 5 2 21 21 H 1.09000 * 109.47194 * 300.00159 * 1 2 3 22 22 H 1.08996 * 109.46716 * 60.00335 * 1 2 3 23 23 H 1.09002 * 109.46422 * 179.97438 * 1 2 3 24 24 H 1.00907 * 110.99658 * 74.02228 * 4 2 1 25 25 H 1.00899 * 111.00740 * 197.98064 * 4 2 1 26 26 H 1.08996 * 109.47186 * 299.46806 * 5 2 1 27 27 H 1.09002 * 109.46881 * 59.46248 * 5 2 1 28 28 H 1.09001 * 109.45755 * 294.16983 * 7 6 5 29 29 H 1.09001 * 109.46625 * 54.15218 * 7 6 5 30 30 H 1.09003 * 109.50028 * 179.11934 * 8 7 6 31 31 H 1.09000 * 109.49897 * 299.22755 * 8 7 6 32 32 H 1.09000 * 109.51918 * 62.24917 * 9 8 7 33 33 H 1.08993 * 109.52346 * 182.37639 * 9 8 7 34 34 H 0.97004 * 119.99921 * 180.02562 * 15 14 12 35 35 H 1.08993 * 109.46681 * 305.85821 * 20 6 5 36 36 H 1.09006 * 109.45954 * 65.82353 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 2.0401 -0.7213 -1.2492 6 7 3.5091 -0.7100 -1.2557 7 6 4.0471 -1.7286 -0.3448 8 6 5.5698 -1.7872 -0.4855 9 6 6.1616 -0.4146 -0.1531 10 6 5.5487 0.6355 -1.0837 11 1 5.8097 0.4033 -2.1163 12 6 6.0816 1.9985 -0.7243 13 1 5.6131 2.5712 0.0625 14 6 7.1671 2.5146 -1.4000 15 7 7.7183 3.6387 -0.9976 16 14 7.8548 1.6168 -2.8867 17 1 7.1303 2.0532 -4.1073 18 1 9.2993 1.9302 -3.0298 19 1 7.6815 0.1532 -2.7050 20 6 4.0266 0.6240 -0.9259 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8958 -1.6904 1.1168 25 1 2.9850 -0.4617 1.3815 26 1 1.6846 -1.7517 -1.2444 27 1 1.6689 -0.2131 -2.1392 28 1 3.7868 -1.4713 0.6819 29 1 3.6217 -2.7005 -0.5948 30 1 5.9703 -2.5323 0.2020 31 1 5.8306 -2.0579 -1.5086 32 1 5.9340 -0.1610 0.8823 33 1 7.2422 -0.4403 -0.2928 34 1 8.4817 4.0020 -1.4732 35 1 3.5862 1.3607 -1.5976 36 1 3.7664 0.8701 0.1037 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235767643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:49 Heat of formation + Delta-G solvation = -20.505041 kcal Electronic energy + Delta-G solvation = -15172.640190 eV Core-core repulsion = 12883.438099 eV Total energy + Delta-G solvation = -2289.202091 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.70799 -37.10061 -34.80871 -33.15263 -32.11166 -30.29479 -27.26481 -26.89219 -23.96831 -22.80891 -21.47737 -20.37836 -19.00070 -17.53336 -16.72120 -16.22889 -15.94152 -15.44368 -15.27622 -14.75735 -14.59504 -14.30757 -13.96779 -13.48127 -13.03220 -12.89294 -12.86996 -12.66546 -12.53694 -12.30360 -11.90556 -11.81260 -11.55884 -11.27859 -11.06440 -10.84605 -10.62388 -10.20677 -8.68618 -8.30357 -6.33002 1.34159 1.35375 1.47303 2.34617 3.00962 3.12587 3.55656 3.87443 4.12275 4.14843 4.23786 4.29236 4.38486 4.49030 4.58375 4.71212 4.80011 4.86200 4.91958 4.97236 5.01077 5.06579 5.15641 5.21294 5.26697 5.33593 5.55896 5.64826 5.75486 6.08351 6.19808 6.28849 6.38779 6.50854 6.75264 7.33085 8.86696 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039593 B = 0.009297 C = 0.008608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.031584 B = 3010.972103 C = 3251.924756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.050 3.950 3 H 0.057 0.943 4 N -0.848 5.848 5 C 0.027 3.973 6 N -0.549 5.549 7 C 0.042 3.958 8 C -0.115 4.115 9 C -0.110 4.110 10 C 0.016 3.984 11 H 0.031 0.969 12 C -0.515 4.515 13 H 0.029 0.971 14 C 0.013 3.987 15 N -0.950 5.950 16 Si 0.943 3.057 17 H -0.270 1.270 18 H -0.288 1.288 19 H -0.246 1.246 20 C 0.083 3.917 21 H 0.052 0.948 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.347 0.653 25 H 0.339 0.661 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.051 0.949 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.856 -13.166 -0.375 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.063 4.063 3 H 0.076 0.924 4 N -0.383 5.383 5 C -0.103 4.103 6 N -0.273 5.273 7 C -0.086 4.086 8 C -0.153 4.153 9 C -0.149 4.149 10 C -0.003 4.003 11 H 0.049 0.951 12 C -0.553 4.553 13 H 0.047 0.953 14 C -0.184 4.184 15 N -0.590 5.590 16 Si 0.767 3.233 17 H -0.196 1.196 18 H -0.215 1.215 19 H -0.170 1.170 20 C -0.045 4.045 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.162 0.838 25 H 0.157 0.843 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -11.115 -12.747 -0.482 16.919 hybrid contribution 1.173 0.322 -0.354 1.267 sum -9.942 -12.425 -0.836 15.935 Atomic orbital electron populations 1.21658 0.92937 1.02472 1.01786 1.22099 0.97167 0.98017 0.89061 0.92439 1.59032 1.26438 1.13774 1.39104 1.23009 0.86852 1.01935 0.98473 1.62161 1.07336 1.05327 1.52434 1.22584 0.95248 0.95565 0.95231 1.21646 0.95304 0.96657 1.01661 1.21727 0.98830 0.95082 0.99216 1.19151 0.92408 0.92966 0.95759 0.95051 1.21256 1.13609 1.01930 1.18528 0.95266 1.25907 0.96630 0.95579 1.00278 1.70068 1.24093 1.22742 1.42092 0.85791 0.77056 0.80561 0.79847 1.19584 1.21470 1.16976 1.21927 0.95883 0.89181 0.97504 0.92885 0.91629 0.91615 0.83788 0.84292 0.89072 0.90580 0.93235 0.89108 0.90024 0.92551 0.93748 0.94564 0.92602 0.93077 0.95878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.52 71.98 0.69 -1.95 16 2 C 0.05 1.24 2.85 44.92 0.13 1.37 16 3 H 0.06 1.79 6.42 -2.38 -0.02 1.77 16 4 N -0.85 -20.72 8.35 -168.67 -1.41 -22.13 16 5 C 0.03 0.66 5.18 86.30 0.45 1.11 16 6 N -0.55 -17.15 4.86 -896.37 -4.35 -21.50 16 7 C 0.04 1.12 4.66 86.33 0.40 1.52 16 8 C -0.11 -3.54 6.09 30.65 0.19 -3.35 16 9 C -0.11 -4.48 5.27 30.67 0.16 -4.31 16 10 C 0.02 0.76 1.96 -11.49 -0.02 0.74 16 11 H 0.03 1.50 5.15 -2.39 -0.01 1.49 16 12 C -0.51 -29.44 8.86 25.60 0.23 -29.22 16 13 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 14 C 0.01 0.76 5.47 84.66 0.46 1.23 16 15 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 16 Si 0.94 45.21 27.13 68.60 1.86 47.07 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 19 H -0.25 -11.04 6.62 99.48 0.66 -10.38 16 20 C 0.08 3.28 3.59 86.33 0.31 3.59 16 21 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.35 6.98 8.03 -89.69 -0.72 6.26 16 25 H 0.34 9.42 5.30 -89.69 -0.48 8.95 16 26 H 0.09 1.84 7.82 -2.39 -0.02 1.82 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.27 4.11 -2.39 -0.01 1.26 16 29 H 0.09 1.95 7.94 -2.39 -0.02 1.93 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.05 2.14 8.12 -2.39 -0.02 2.12 16 36 H 0.02 0.93 5.48 -2.38 -0.01 0.92 16 Total: -1.00 -64.13 268.46 -0.79 -64.92 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.18 Total: 20.51 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 2.99 Total: -29.27 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -5.46 Total: -103.22 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.86 Total: 47.07 kcal Total: -64.13 -0.79 -64.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235767643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.414 kcal (2) G-P(sol) polarization free energy of solvation -64.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds