Wall clock time and date at job start Sun Mar 29 2020 21:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47012 * 2 1 4 4 N 1.46903 * 109.47160 * 240.00121 * 2 1 3 5 5 C 1.52996 * 109.47000 * 119.99646 * 2 1 3 6 6 N 1.46912 * 109.46910 * 174.99932 * 5 2 1 7 7 C 1.46844 * 110.99768 * 45.79264 * 6 5 2 8 8 C 1.53034 * 109.52050 * 185.83623 * 7 6 5 9 9 C 1.53118 * 109.28213 * 300.82037 * 8 7 6 10 10 C 1.53116 * 109.15937 * 57.65364 * 9 8 7 11 11 H 1.09010 * 109.53720 * 62.30465 * 10 9 8 12 12 C 1.50697 * 109.50727 * 182.40409 * 10 9 8 13 13 H 1.08001 * 119.99914 * 95.01343 * 12 10 9 14 14 C 1.37872 * 120.00050 * 275.02116 * 12 10 9 15 15 N 1.31514 * 120.00446 * 355.15716 * 14 12 10 16 16 Si 1.86802 * 120.00079 * 175.15702 * 14 12 10 17 17 H 1.48506 * 109.46993 * 59.99777 * 16 14 12 18 18 H 1.48498 * 109.47382 * 300.00213 * 16 14 12 19 19 H 1.48495 * 109.47309 * 179.97438 * 16 14 12 20 20 C 1.46840 * 110.99806 * 170.00170 * 6 5 2 21 21 H 1.08998 * 109.47076 * 60.00293 * 1 2 3 22 22 H 1.08998 * 109.47012 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46950 * 300.00243 * 1 2 3 24 24 H 1.00891 * 111.00132 * 59.99781 * 4 2 1 25 25 H 1.00897 * 110.99689 * 183.95481 * 4 2 1 26 26 H 1.09007 * 109.46997 * 55.00546 * 5 2 1 27 27 H 1.08993 * 109.47675 * 295.00012 * 5 2 1 28 28 H 1.09000 * 109.46162 * 305.85430 * 7 6 5 29 29 H 1.09006 * 109.46022 * 65.83225 * 7 6 5 30 30 H 1.09005 * 109.50346 * 60.76450 * 8 7 6 31 31 H 1.09003 * 109.49988 * 180.87889 * 8 7 6 32 32 H 1.09002 * 109.52401 * 297.75346 * 9 8 7 33 33 H 1.08997 * 109.52306 * 177.55546 * 9 8 7 34 34 H 0.97009 * 119.99668 * 5.18347 * 15 14 12 35 35 H 1.09008 * 109.46676 * 54.14438 * 20 6 5 36 36 H 1.08999 * 109.45953 * 294.17275 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7212 1.2493 6 7 3.5041 -0.8266 1.1904 7 6 4.1081 0.4514 0.7926 8 6 5.6152 0.2670 0.6008 9 6 6.2351 -0.2259 1.9113 10 6 5.5551 -1.5328 2.3285 11 1 5.7338 -2.2951 1.5701 12 6 6.1183 -1.9942 3.6480 13 1 5.6146 -1.7396 4.5688 14 6 7.2767 -2.7411 3.6796 15 7 7.8381 -3.1320 2.5564 16 14 8.0489 -3.1982 5.3180 17 1 7.0839 -3.9987 6.1139 18 1 8.3989 -1.9618 6.0624 19 1 9.2774 -3.9979 5.0803 20 6 4.0497 -1.2963 2.4702 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.6962 -0.2350 -2.0385 25 1 3.0262 -0.7625 -1.1909 26 1 1.6054 -1.7198 1.2952 27 1 1.7517 -0.1583 2.1370 28 1 3.6615 0.7887 -0.1427 29 1 3.9293 1.1950 1.5694 30 1 5.7949 -0.4664 -0.1853 31 1 6.0655 1.2193 0.3208 32 1 6.0894 0.5246 2.6882 33 1 7.3013 -0.4001 1.7670 34 1 7.4808 -2.8324 1.7057 35 1 3.5607 -2.2284 2.7535 36 1 3.8711 -0.5444 3.2389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235767644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:51 Heat of formation + Delta-G solvation = -14.477467 kcal Electronic energy + Delta-G solvation = -14891.758346 eV Core-core repulsion = 12602.817631 eV Total energy + Delta-G solvation = -2288.940716 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.85054 -35.95247 -33.27844 -31.64482 -29.67322 -29.08777 -25.88630 -24.56929 -22.22869 -21.93450 -19.77819 -18.88356 -16.75977 -15.76592 -15.71472 -15.15315 -14.14860 -13.72628 -13.64275 -13.50528 -13.14547 -12.49632 -12.12780 -12.00337 -11.78264 -11.67379 -11.41237 -11.17397 -10.90412 -10.73387 -10.26576 -10.11857 -10.04461 -9.52701 -9.20722 -8.51769 -8.40302 -8.24157 -7.72729 -6.30460 -4.01155 3.45820 3.47134 3.66158 4.34905 4.57634 4.66388 4.96476 5.25933 5.31377 5.40017 5.48853 5.56093 5.71724 5.77751 5.85315 5.94021 6.05265 6.09932 6.24221 6.27499 6.40257 6.47919 6.53553 6.76993 6.96211 7.03387 7.29544 7.47305 7.58586 7.65737 7.71827 7.79999 8.33346 8.48670 8.93948 9.71525 11.08745 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054009 B = 0.007261 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.307160 B = 3855.529252 C = 4065.871362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.031 0.969 4 N -0.840 5.840 5 C 0.060 3.940 6 N -0.535 5.535 7 C 0.056 3.944 8 C -0.119 4.119 9 C -0.109 4.109 10 C 0.037 3.963 11 H 0.041 0.959 12 C -0.596 4.596 13 H 0.045 0.955 14 C 0.022 3.978 15 N -0.912 5.912 16 Si 1.066 2.934 17 H -0.289 1.289 18 H -0.289 1.289 19 H -0.283 1.283 20 C 0.075 3.925 21 H 0.051 0.949 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.329 0.671 25 H 0.355 0.645 26 H 0.078 0.922 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.052 0.948 34 H 0.272 0.728 35 H 0.063 0.937 36 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.057 7.485 -4.692 13.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.048 0.952 4 N -0.373 5.373 5 C -0.068 4.068 6 N -0.260 5.260 7 C -0.072 4.072 8 C -0.157 4.157 9 C -0.147 4.147 10 C 0.018 3.982 11 H 0.059 0.941 12 C -0.635 4.635 13 H 0.064 0.936 14 C -0.183 4.183 15 N -0.548 5.548 16 Si 0.894 3.106 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.208 1.208 20 C -0.052 4.052 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.141 0.859 25 H 0.171 0.829 26 H 0.097 0.903 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -9.103 5.640 -4.073 11.458 hybrid contribution -1.021 2.513 -0.204 2.720 sum -10.124 8.153 -4.277 13.685 Atomic orbital electron populations 1.21790 0.94759 1.02518 1.01111 1.21389 0.94855 0.94859 0.91470 0.95155 1.58666 1.18125 1.57581 1.02902 1.22202 0.89176 1.00616 0.94842 1.62078 1.03276 1.27410 1.33236 1.22113 0.96007 0.90536 0.98521 1.21685 0.93830 0.99899 1.00306 1.21779 0.99900 0.99391 0.93635 1.18860 0.88710 0.93065 0.97614 0.94125 1.21894 1.11437 1.37927 0.92193 0.93627 1.25763 0.94768 0.93674 1.04050 1.70776 1.43395 1.42148 0.98464 0.83594 0.76360 0.76290 0.74313 1.21531 1.21568 1.20811 1.22225 0.98576 0.97922 0.86441 0.92977 0.91702 0.92551 0.85904 0.82859 0.90328 0.95357 0.92322 0.95983 0.91854 0.93333 0.94140 0.92876 0.91677 0.91863 0.96532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.49 37.16 0.35 -1.20 16 2 C 0.09 1.12 2.79 -67.71 -0.19 0.93 16 3 H 0.03 0.40 6.54 -51.93 -0.34 0.06 16 4 N -0.84 -11.03 9.15 -4.67 -0.04 -11.07 16 5 C 0.06 0.94 4.97 -3.82 -0.02 0.93 16 6 N -0.54 -9.87 4.14 -234.67 -0.97 -10.84 16 7 C 0.06 0.96 4.41 -3.84 -0.02 0.94 16 8 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 9 C -0.11 -2.47 5.27 -26.61 -0.14 -2.61 16 10 C 0.04 0.92 1.99 -91.69 -0.18 0.74 16 11 H 0.04 1.13 6.67 -51.92 -0.35 0.78 16 12 C -0.60 -16.72 8.32 -34.44 -0.29 -17.01 16 13 H 0.05 1.28 7.81 -52.49 -0.41 0.87 16 14 C 0.02 0.63 5.45 -17.82 -0.10 0.53 16 15 N -0.91 -27.57 13.63 55.43 0.76 -26.82 16 16 Si 1.07 25.29 29.91 -169.99 -5.08 20.20 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.08 1.65 4.69 -3.84 -0.02 1.63 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.33 3.53 9.04 -39.30 -0.36 3.18 16 25 H 0.36 5.13 6.91 -39.29 -0.27 4.86 16 26 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 27 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.06 0.86 5.05 -51.93 -0.26 0.60 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.27 8.20 6.66 -40.82 -0.27 7.93 16 35 H 0.06 1.42 8.12 -51.92 -0.42 1.00 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 277.89 15.07 4.19 4.19 Total: -1.00 -29.38 277.89 -8.03 -37.42 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.12 Total: 4.43 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -0.76 Total: -17.50 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.26 Total: -48.73 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.38 -8.03 -37.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235767644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.938 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds