Wall clock time and date at job start Sun Mar 29 2020 21:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47012 * 2 1 4 4 N 1.46903 * 109.47160 * 240.00121 * 2 1 3 5 5 C 1.52996 * 109.47000 * 119.99646 * 2 1 3 6 6 N 1.46912 * 109.46910 * 174.99932 * 5 2 1 7 7 C 1.46844 * 110.99768 * 45.79264 * 6 5 2 8 8 C 1.53034 * 109.52050 * 185.83623 * 7 6 5 9 9 C 1.53118 * 109.28213 * 300.82037 * 8 7 6 10 10 C 1.53116 * 109.15937 * 57.65364 * 9 8 7 11 11 H 1.09010 * 109.53720 * 62.30465 * 10 9 8 12 12 C 1.50697 * 109.50727 * 182.40409 * 10 9 8 13 13 H 1.08001 * 119.99914 * 95.01343 * 12 10 9 14 14 C 1.37872 * 120.00050 * 275.02116 * 12 10 9 15 15 N 1.31514 * 120.00446 * 355.15716 * 14 12 10 16 16 Si 1.86802 * 120.00079 * 175.15702 * 14 12 10 17 17 H 1.48506 * 109.46993 * 59.99777 * 16 14 12 18 18 H 1.48498 * 109.47382 * 300.00213 * 16 14 12 19 19 H 1.48495 * 109.47309 * 179.97438 * 16 14 12 20 20 C 1.46840 * 110.99806 * 170.00170 * 6 5 2 21 21 H 1.08998 * 109.47076 * 60.00293 * 1 2 3 22 22 H 1.08998 * 109.47012 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46950 * 300.00243 * 1 2 3 24 24 H 1.00891 * 111.00132 * 59.99781 * 4 2 1 25 25 H 1.00897 * 110.99689 * 183.95481 * 4 2 1 26 26 H 1.09007 * 109.46997 * 55.00546 * 5 2 1 27 27 H 1.08993 * 109.47675 * 295.00012 * 5 2 1 28 28 H 1.09000 * 109.46162 * 305.85430 * 7 6 5 29 29 H 1.09006 * 109.46022 * 65.83225 * 7 6 5 30 30 H 1.09005 * 109.50346 * 60.76450 * 8 7 6 31 31 H 1.09003 * 109.49988 * 180.87889 * 8 7 6 32 32 H 1.09002 * 109.52401 * 297.75346 * 9 8 7 33 33 H 1.08997 * 109.52306 * 177.55546 * 9 8 7 34 34 H 0.97009 * 119.99668 * 5.18347 * 15 14 12 35 35 H 1.09008 * 109.46676 * 54.14438 * 20 6 5 36 36 H 1.08999 * 109.45953 * 294.17275 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7212 1.2493 6 7 3.5041 -0.8266 1.1904 7 6 4.1081 0.4514 0.7926 8 6 5.6152 0.2670 0.6008 9 6 6.2351 -0.2259 1.9113 10 6 5.5551 -1.5328 2.3285 11 1 5.7338 -2.2951 1.5701 12 6 6.1183 -1.9942 3.6480 13 1 5.6146 -1.7396 4.5688 14 6 7.2767 -2.7411 3.6796 15 7 7.8381 -3.1320 2.5564 16 14 8.0489 -3.1982 5.3180 17 1 7.0839 -3.9987 6.1139 18 1 8.3989 -1.9618 6.0624 19 1 9.2774 -3.9979 5.0803 20 6 4.0497 -1.2963 2.4702 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.6962 -0.2350 -2.0385 25 1 3.0262 -0.7625 -1.1909 26 1 1.6054 -1.7198 1.2952 27 1 1.7517 -0.1583 2.1370 28 1 3.6615 0.7887 -0.1427 29 1 3.9293 1.1950 1.5694 30 1 5.7949 -0.4664 -0.1853 31 1 6.0655 1.2193 0.3208 32 1 6.0894 0.5246 2.6882 33 1 7.3013 -0.4001 1.7670 34 1 7.4808 -2.8324 1.7057 35 1 3.5607 -2.2284 2.7535 36 1 3.8711 -0.5444 3.2389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235767644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:51 Heat of formation + Delta-G solvation = -35.225504 kcal Electronic energy + Delta-G solvation = -14892.658049 eV Core-core repulsion = 12602.817631 eV Total energy + Delta-G solvation = -2289.840418 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.34485 -37.36318 -35.11192 -33.24455 -31.50194 -30.10154 -27.20738 -26.59761 -23.78226 -23.64466 -21.17642 -20.45238 -18.80918 -17.03439 -16.86713 -16.52852 -15.86616 -15.63293 -15.17644 -15.01658 -14.49506 -14.17205 -13.66265 -13.47651 -13.26535 -12.92205 -12.72568 -12.65765 -12.50965 -12.07289 -12.00971 -11.90231 -11.70423 -11.41491 -11.04763 -10.47349 -10.37776 -9.51359 -9.21622 -8.59179 -6.30107 1.52614 1.60356 1.79736 2.57314 2.96307 3.22201 3.61521 3.87350 3.99470 4.06568 4.20421 4.26396 4.36312 4.41224 4.53389 4.64405 4.70551 4.76069 4.85429 4.91167 4.95260 5.01111 5.06393 5.17610 5.21392 5.32266 5.53385 5.74000 5.94791 6.18028 6.23991 6.28336 6.38290 6.68522 6.70015 7.50684 8.80189 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054009 B = 0.007261 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.307160 B = 3855.529252 C = 4065.871362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.091 3.909 3 H 0.040 0.960 4 N -0.849 5.849 5 C 0.059 3.941 6 N -0.542 5.542 7 C 0.061 3.939 8 C -0.112 4.112 9 C -0.101 4.101 10 C 0.032 3.968 11 H 0.006 0.994 12 C -0.610 4.610 13 H 0.041 0.959 14 C -0.029 4.029 15 N -0.938 5.938 16 Si 1.112 2.888 17 H -0.272 1.272 18 H -0.271 1.271 19 H -0.284 1.284 20 C 0.089 3.911 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.345 0.655 25 H 0.347 0.653 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.091 0.909 29 H 0.025 0.975 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.024 0.976 34 H 0.259 0.741 35 H 0.048 0.952 36 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.309 8.915 -4.860 15.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 H 0.057 0.943 4 N -0.382 5.382 5 C -0.069 4.069 6 N -0.267 5.267 7 C -0.067 4.067 8 C -0.150 4.150 9 C -0.140 4.140 10 C 0.013 3.987 11 H 0.024 0.976 12 C -0.648 4.648 13 H 0.059 0.941 14 C -0.227 4.227 15 N -0.575 5.575 16 Si 0.934 3.066 17 H -0.198 1.198 18 H -0.197 1.197 19 H -0.210 1.210 20 C -0.039 4.039 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.159 0.841 25 H 0.162 0.838 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.109 0.891 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -10.395 7.094 -4.261 13.287 hybrid contribution -0.683 2.073 -0.184 2.191 sum -11.078 9.167 -4.445 15.051 Atomic orbital electron populations 1.21754 0.92910 1.02492 1.02529 1.21373 0.96246 0.94545 0.89937 0.94271 1.58643 1.17547 1.58258 1.03770 1.22277 0.87081 1.00684 0.96843 1.61974 1.05134 1.28683 1.30913 1.22139 0.94760 0.89705 1.00064 1.21619 0.95040 1.00963 0.97369 1.21582 0.98207 0.98082 0.96098 1.18816 0.91246 0.93259 0.95367 0.97551 1.22294 1.11498 1.37694 0.93334 0.94054 1.27193 0.95463 0.93611 1.06461 1.70898 1.44264 1.43724 0.98608 0.83002 0.75781 0.76939 0.70878 1.19777 1.19681 1.20973 1.21867 0.96337 0.97435 0.88259 0.91207 0.92465 0.91535 0.84149 0.83764 0.91392 0.94823 0.89110 0.95704 0.92480 0.90367 0.94322 0.95717 0.93092 0.93309 0.96812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.49 71.98 0.68 -1.89 16 2 C 0.09 2.10 2.79 44.91 0.13 2.22 16 3 H 0.04 0.86 6.54 -2.39 -0.02 0.85 16 4 N -0.85 -20.16 9.15 -168.68 -1.54 -21.70 16 5 C 0.06 1.76 4.97 86.30 0.43 2.19 16 6 N -0.54 -19.46 4.14 -896.35 -3.71 -23.17 16 7 C 0.06 1.93 4.41 86.33 0.38 2.31 16 8 C -0.11 -3.99 6.09 30.64 0.19 -3.81 16 9 C -0.10 -4.65 5.27 30.67 0.16 -4.49 16 10 C 0.03 1.66 1.99 -11.49 -0.02 1.64 16 11 H 0.01 0.37 6.67 -2.38 -0.02 0.35 16 12 C -0.61 -34.95 8.32 25.60 0.21 -34.74 16 13 H 0.04 2.35 7.81 -2.91 -0.02 2.32 16 14 C -0.03 -1.69 5.45 84.65 0.46 -1.23 16 15 N -0.94 -58.36 13.63 21.45 0.29 -58.07 16 16 Si 1.11 51.05 29.91 68.60 2.05 53.10 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 C 0.09 3.91 4.69 86.33 0.40 4.32 16 21 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.35 6.36 9.04 -89.70 -0.81 5.55 16 25 H 0.35 9.27 6.91 -89.70 -0.62 8.65 16 26 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 27 H 0.03 0.97 8.08 -2.39 -0.02 0.95 16 28 H 0.09 2.35 5.05 -2.39 -0.01 2.33 16 29 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.26 16.33 6.66 -92.70 -0.62 15.71 16 35 H 0.05 2.24 8.12 -2.38 -0.02 2.22 16 36 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -64.37 277.89 -0.11 -64.48 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -0.23 Total: 18.84 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 3.02 Total: -33.48 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -4.96 Total: -102.93 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.05 Total: 53.10 kcal Total: -64.37 -0.11 -64.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235767644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.252 kcal (2) G-P(sol) polarization free energy of solvation -64.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds