Wall clock time and date at job start Sun Mar 29 2020 21:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46828 * 2 1 4 4 N 1.46895 * 109.47564 * 240.00284 * 2 1 3 5 5 C 1.52997 * 109.47112 * 119.99736 * 2 1 3 6 6 N 1.46903 * 109.47401 * 297.52512 * 5 2 1 7 7 C 1.46844 * 110.99624 * 307.96710 * 6 5 2 8 8 C 1.53040 * 109.51859 * 174.16182 * 7 6 5 9 9 C 1.53116 * 109.28113 * 59.18134 * 8 7 6 10 10 C 1.53117 * 109.15133 * 302.33840 * 9 8 7 11 11 H 1.09005 * 109.51410 * 297.72511 * 10 9 8 12 12 C 1.50700 * 109.49368 * 177.60441 * 10 9 8 13 13 H 1.08003 * 119.99976 * 240.20090 * 12 10 9 14 14 C 1.37875 * 119.99947 * 60.20307 * 12 10 9 15 15 N 1.31515 * 120.00184 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99931 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46757 * 60.00432 * 16 14 12 18 18 H 1.48500 * 109.47022 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47063 * 300.00232 * 16 14 12 20 20 C 1.46841 * 110.99858 * 183.75942 * 6 5 2 21 21 H 1.09002 * 109.47056 * 299.99932 * 1 2 3 22 22 H 1.09001 * 109.46833 * 60.00213 * 1 2 3 23 23 H 1.08995 * 109.46903 * 179.97438 * 1 2 3 24 24 H 1.00897 * 111.00831 * 180.93256 * 4 2 1 25 25 H 1.00908 * 110.99687 * 304.88227 * 4 2 1 26 26 H 1.09005 * 109.47153 * 177.51807 * 5 2 1 27 27 H 1.09004 * 109.46785 * 57.52606 * 5 2 1 28 28 H 1.08998 * 109.46625 * 294.17771 * 7 6 5 29 29 H 1.09002 * 109.46193 * 54.15668 * 7 6 5 30 30 H 1.09002 * 109.49953 * 179.12428 * 8 7 6 31 31 H 1.08999 * 109.50123 * 299.23683 * 8 7 6 32 32 H 1.09004 * 109.52318 * 62.25129 * 9 8 7 33 33 H 1.08996 * 109.52105 * 182.37512 * 9 8 7 34 34 H 0.97000 * 120.00242 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.46452 * 305.85428 * 20 6 5 36 36 H 1.09002 * 109.46706 * 65.83493 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0400 -0.7212 1.2492 6 7 1.5998 0.0050 2.4480 7 6 1.9582 1.4265 2.3632 8 6 1.3594 2.1767 3.5552 9 6 1.8972 1.5722 4.8551 10 6 1.5524 0.0809 4.8958 11 1 0.4694 -0.0426 4.8953 12 6 2.1293 -0.5347 6.1445 13 1 2.8475 -1.3377 6.0686 14 6 1.7401 -0.0728 7.3839 15 7 0.8650 0.9047 7.4764 16 14 2.4545 -0.8363 8.9319 17 1 3.9297 -0.6656 8.9325 18 1 1.8779 -0.1670 10.1255 19 1 2.1236 -2.2835 8.9682 20 6 2.1458 -0.6087 3.6651 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.0282 -0.7192 -1.2151 25 1 1.6324 -1.6219 -1.2638 26 1 3.1291 -0.7599 1.2273 27 1 1.6408 -1.7353 1.2717 28 1 3.0432 1.5290 2.3775 29 1 1.5660 1.8453 1.4364 30 1 1.6386 3.2290 3.5003 31 1 0.2734 2.0863 3.5337 32 1 2.9793 1.6973 4.8946 33 1 1.4408 2.0759 5.7071 34 1 0.5915 1.2299 8.3484 35 1 1.8902 -1.6681 3.6838 36 1 3.2300 -0.4965 3.6735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235767646.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:54 Heat of formation + Delta-G solvation = -32.212296 kcal Electronic energy + Delta-G solvation = -14858.800945 eV Core-core repulsion = 12569.091189 eV Total energy + Delta-G solvation = -2289.709756 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16809 -37.29278 -35.02155 -33.07230 -31.73563 -29.64837 -27.20004 -26.93756 -23.77156 -23.40295 -21.10892 -20.29288 -18.44211 -17.26049 -16.77222 -16.52453 -15.93113 -15.43018 -14.96227 -14.71319 -14.42659 -14.16607 -13.90177 -13.49805 -12.95058 -12.83331 -12.66255 -12.62706 -12.56533 -12.23779 -11.98917 -11.73757 -11.55936 -11.38824 -10.93739 -10.67632 -10.39028 -9.64369 -9.14381 -8.08982 -6.23669 1.40598 1.41851 1.49610 2.41686 3.05703 3.17716 3.75128 3.87269 4.07562 4.19414 4.27857 4.37975 4.45983 4.57981 4.66860 4.78131 4.80276 4.88347 4.96672 5.09015 5.09450 5.16376 5.26887 5.37610 5.46387 5.51408 5.62040 5.94593 6.09834 6.16643 6.19742 6.39097 6.44118 6.60323 6.88755 7.44254 8.95453 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055533 B = 0.007222 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.079583 B = 3876.154130 C = 4122.283473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.092 3.908 3 H 0.081 0.919 4 N -0.840 5.840 5 C 0.026 3.974 6 N -0.538 5.538 7 C 0.062 3.938 8 C -0.111 4.111 9 C -0.104 4.104 10 C 0.053 3.947 11 H -0.003 1.003 12 C -0.540 4.540 13 H 0.050 0.950 14 C 0.015 3.985 15 N -0.915 5.915 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.271 1.271 20 C 0.082 3.918 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.346 0.654 25 H 0.346 0.654 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.022 0.978 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.261 0.739 35 H 0.053 0.947 36 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.180 -0.906 -12.848 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.020 4.020 3 H 0.099 0.901 4 N -0.370 5.370 5 C -0.104 4.104 6 N -0.263 5.263 7 C -0.066 4.066 8 C -0.149 4.149 9 C -0.142 4.142 10 C 0.034 3.966 11 H 0.016 0.984 12 C -0.578 4.578 13 H 0.068 0.932 14 C -0.184 4.184 15 N -0.554 5.554 16 Si 0.780 3.220 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.046 4.046 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.159 0.841 25 H 0.159 0.841 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 1.208 -0.247 -13.126 13.184 hybrid contribution 1.592 -1.047 1.965 2.737 sum 2.800 -1.294 -11.161 11.580 Atomic orbital electron populations 1.21648 0.93761 1.01922 1.01642 1.21480 0.96450 0.97909 0.86123 0.90138 1.59085 1.13866 1.24825 1.39184 1.23075 0.97221 0.98653 0.91409 1.61960 1.59900 1.02700 1.01714 1.22142 0.97124 0.88277 0.99049 1.21595 1.00125 0.98540 0.94629 1.21462 0.97305 0.98487 0.96976 1.18576 0.94514 0.92533 0.90942 0.98436 1.21500 1.25392 1.18705 0.92243 0.93206 1.25720 0.95306 0.95439 1.01948 1.70027 1.32864 1.27795 1.24741 0.85675 0.78727 0.78749 0.78873 1.19713 1.20798 1.19667 1.21973 0.95040 0.97586 0.90025 0.92396 0.91997 0.92996 0.84121 0.84132 0.95696 0.91310 0.96014 0.88761 0.91217 0.92920 0.96102 0.92381 0.92999 0.92839 0.97031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.26 71.98 0.67 -2.47 16 2 C 0.09 2.13 2.97 44.91 0.13 2.27 16 3 H 0.08 1.92 6.04 -2.38 -0.01 1.91 16 4 N -0.84 -15.90 9.26 -168.69 -1.56 -17.46 16 5 C 0.03 0.74 4.82 86.30 0.42 1.15 16 6 N -0.54 -19.12 4.10 -896.35 -3.68 -22.80 16 7 C 0.06 2.05 5.03 86.33 0.43 2.49 16 8 C -0.11 -4.29 6.09 30.65 0.19 -4.10 16 9 C -0.10 -5.07 5.02 30.67 0.15 -4.91 16 10 C 0.05 2.76 2.26 -11.49 -0.03 2.73 16 11 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 12 C -0.54 -30.46 8.56 25.60 0.22 -30.24 16 13 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 14 C 0.01 0.83 5.30 84.65 0.45 1.28 16 15 N -0.92 -53.72 11.37 21.45 0.24 -53.48 16 16 Si 0.95 44.07 29.54 68.60 2.03 46.09 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 20 C 0.08 3.52 4.68 86.33 0.40 3.92 16 21 H 0.06 1.59 7.66 -2.39 -0.02 1.58 16 22 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.35 5.70 9.03 -89.70 -0.81 4.89 16 25 H 0.35 5.77 8.98 -89.69 -0.81 4.97 16 26 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 2.63 5.74 -2.39 -0.01 2.61 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.06 3.19 6.17 -2.39 -0.01 3.18 16 34 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.05 2.30 8.12 -2.39 -0.02 2.28 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -60.64 278.81 -0.50 -61.13 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -0.56 Total: 14.40 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 3.04 Total: -27.88 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -5.00 Total: -93.74 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -60.64 -0.50 -61.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235767646.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.920 kcal (2) G-P(sol) polarization free energy of solvation -60.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds