Wall clock time and date at job start Sun Mar 29 2020 21:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46883 * 2 1 4 4 N 1.46898 * 109.47077 * 119.99585 * 2 1 3 5 5 C 1.53003 * 109.47514 * 239.99801 * 2 1 3 6 6 N 1.46895 * 109.47231 * 184.35554 * 5 2 1 7 7 C 1.46839 * 111.00041 * 163.02557 * 6 5 2 8 8 C 1.53035 * 109.52573 * 185.83547 * 7 6 5 9 9 C 1.53123 * 109.28128 * 300.82055 * 8 7 6 10 10 C 1.53124 * 109.15642 * 57.64916 * 9 8 7 11 11 H 1.08998 * 109.50056 * 62.33408 * 10 9 8 12 12 C 1.50703 * 109.50091 * 182.40670 * 10 9 8 13 13 H 1.08000 * 119.99947 * 114.29824 * 12 10 9 14 14 C 1.37882 * 120.00043 * 294.30466 * 12 10 9 15 15 N 1.31510 * 119.99974 * 155.66966 * 14 12 10 16 16 Si 1.86801 * 119.99730 * 335.66668 * 14 12 10 17 17 H 1.48507 * 109.46685 * 180.02562 * 16 14 12 18 18 H 1.48492 * 109.47024 * 60.00436 * 16 14 12 19 19 H 1.48501 * 109.47037 * 299.99946 * 16 14 12 20 20 C 1.46857 * 110.99866 * 287.23085 * 6 5 2 21 21 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47165 * 300.00642 * 1 2 3 23 23 H 1.09007 * 109.46915 * 60.00285 * 1 2 3 24 24 H 1.00902 * 110.99745 * 300.00330 * 4 2 1 25 25 H 1.00899 * 110.99919 * 63.95621 * 4 2 1 26 26 H 1.09000 * 109.46636 * 64.35000 * 5 2 1 27 27 H 1.09006 * 109.46517 * 304.35366 * 5 2 1 28 28 H 1.09001 * 109.46527 * 65.82295 * 7 6 5 29 29 H 1.09001 * 109.45460 * 305.84515 * 7 6 5 30 30 H 1.09004 * 109.50997 * 180.87649 * 8 7 6 31 31 H 1.09008 * 109.50364 * 60.75787 * 8 7 6 32 32 H 1.09000 * 109.51796 * 297.75132 * 9 8 7 33 33 H 1.08995 * 109.57648 * 177.58621 * 9 8 7 34 34 H 0.97001 * 120.00196 * 354.95351 * 15 14 12 35 35 H 1.09007 * 109.45548 * 54.14635 * 20 6 5 36 36 H 1.08996 * 109.45993 * 294.18095 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0401 -0.7213 -1.2492 6 7 3.5053 -0.8130 -1.1977 7 6 4.0028 -1.8232 -2.1402 8 6 5.5124 -1.9945 -1.9566 9 6 6.2073 -0.6527 -2.2039 10 6 5.6367 0.3935 -1.2423 11 1 5.8466 0.0961 -0.2149 12 6 6.2731 1.7312 -1.5189 13 1 5.6740 2.5465 -1.8966 14 6 7.6204 1.9143 -1.2898 15 7 8.2767 2.8505 -1.9395 16 14 8.5134 0.8323 -0.0563 17 1 9.9432 1.2289 0.0059 18 1 8.4110 -0.5877 -0.4781 19 1 7.8960 0.9964 1.2843 20 6 4.1236 0.4956 -1.4467 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.6960 -0.2348 2.0385 25 1 1.7502 -1.6647 1.1910 26 1 1.7418 -0.1644 -2.1375 27 1 1.6144 -1.7240 -1.2890 28 1 3.7953 -1.5012 -3.1607 29 1 3.5037 -2.7735 -1.9506 30 1 5.8840 -2.7331 -2.6669 31 1 5.7197 -2.3298 -0.9403 32 1 6.0324 -0.3360 -3.2321 33 1 7.2784 -0.7591 -2.0326 34 1 7.8313 3.3632 -2.6322 35 1 3.7121 1.2294 -0.7535 36 1 3.9154 0.8066 -2.4704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235767648.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:57 Heat of formation + Delta-G solvation = -12.835227 kcal Electronic energy + Delta-G solvation = -14941.182623 eV Core-core repulsion = 12652.313121 eV Total energy + Delta-G solvation = -2288.869503 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.54616 -36.00145 -33.22588 -31.62116 -30.06215 -28.75115 -25.97542 -24.53528 -22.53317 -20.83822 -20.11319 -18.61379 -17.38470 -16.07730 -15.36337 -14.67762 -14.03797 -13.80189 -13.37848 -13.24464 -13.04782 -12.71628 -12.55092 -12.16744 -11.95418 -11.71724 -11.27882 -11.10250 -10.68600 -10.45824 -10.34823 -9.99875 -9.71546 -9.44887 -9.22907 -8.69395 -8.33259 -8.03783 -7.57613 -6.36102 -3.93103 3.52217 3.56857 3.74643 4.37799 4.62911 4.78986 5.04183 5.21459 5.31071 5.37627 5.54155 5.62659 5.63981 5.80298 5.90569 5.93983 5.95434 6.12801 6.25236 6.31626 6.47199 6.52527 6.62341 6.82952 7.00958 7.07256 7.40751 7.47146 7.64059 7.72152 7.82214 7.85987 8.37422 8.48455 9.01612 9.71225 11.00762 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035656 B = 0.009014 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.083425 B = 3105.570895 C = 3316.549968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.091 3.909 3 H 0.081 0.919 4 N -0.820 5.820 5 C 0.063 3.937 6 N -0.521 5.521 7 C 0.064 3.936 8 C -0.118 4.118 9 C -0.118 4.118 10 C 0.031 3.969 11 H 0.030 0.970 12 C -0.605 4.605 13 H 0.052 0.948 14 C 0.038 3.962 15 N -0.903 5.903 16 Si 1.039 2.961 17 H -0.289 1.289 18 H -0.276 1.276 19 H -0.283 1.283 20 C 0.081 3.919 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.331 0.669 25 H 0.334 0.666 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.020 0.980 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.267 0.733 35 H 0.063 0.937 36 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.817 -9.038 2.565 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.021 4.021 3 H 0.099 0.901 4 N -0.348 5.348 5 C -0.066 4.066 6 N -0.245 5.245 7 C -0.065 4.065 8 C -0.156 4.156 9 C -0.156 4.156 10 C 0.012 3.988 11 H 0.048 0.952 12 C -0.643 4.643 13 H 0.070 0.930 14 C -0.167 4.167 15 N -0.537 5.537 16 Si 0.867 3.133 17 H -0.216 1.216 18 H -0.203 1.203 19 H -0.209 1.209 20 C -0.046 4.046 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.143 0.857 25 H 0.146 0.854 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -10.469 -9.222 3.485 14.380 hybrid contribution -2.874 0.417 -1.481 3.260 sum -13.343 -8.806 2.004 16.112 Atomic orbital electron populations 1.22662 0.98434 1.01533 1.02000 1.21437 0.90520 0.99015 0.91114 0.90111 1.58603 1.67447 1.05782 1.02961 1.22071 0.89928 0.99185 0.95424 1.61912 1.03357 1.08498 1.50752 1.21990 0.96513 0.94768 0.93188 1.21657 0.94046 0.98751 1.01176 1.22012 0.99486 0.93726 1.00402 1.18925 0.90014 0.94971 0.94921 0.95182 1.21914 0.95851 0.96940 1.49574 0.92957 1.25699 0.94715 0.98205 0.98125 1.70859 1.38286 1.23276 1.21245 0.84108 0.75802 0.76330 0.77050 1.21556 1.20269 1.20912 1.22095 0.97219 0.87971 0.97333 0.92969 0.92732 0.92379 0.85652 0.85401 0.95266 0.92030 0.96175 0.92363 0.93219 0.91818 0.93634 0.92660 0.92344 0.91849 0.96744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 9.48 37.16 0.35 -1.56 16 2 C 0.09 1.23 3.32 -67.71 -0.23 1.00 16 3 H 0.08 1.25 6.86 -51.93 -0.36 0.89 16 4 N -0.82 -10.84 8.99 -4.67 -0.04 -10.88 16 5 C 0.06 0.93 4.61 -3.83 -0.02 0.91 16 6 N -0.52 -9.53 4.34 -234.67 -1.02 -10.55 16 7 C 0.06 1.09 5.44 -3.84 -0.02 1.07 16 8 C -0.12 -2.22 6.09 -26.65 -0.16 -2.38 16 9 C -0.12 -2.70 5.00 -26.60 -0.13 -2.83 16 10 C 0.03 0.77 1.86 -91.69 -0.17 0.60 16 11 H 0.03 0.78 6.71 -51.93 -0.35 0.44 16 12 C -0.61 -17.49 8.76 -34.44 -0.30 -17.79 16 13 H 0.05 1.62 7.99 -52.49 -0.42 1.20 16 14 C 0.04 1.12 5.26 -17.82 -0.09 1.03 16 15 N -0.90 -28.24 13.70 55.43 0.76 -27.48 16 16 Si 1.04 26.17 26.57 -169.99 -4.52 21.66 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.28 -6.52 6.00 56.52 0.34 -6.18 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 C 0.08 1.76 4.53 -3.83 -0.02 1.74 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 24 H 0.33 3.77 9.04 -39.29 -0.36 3.41 16 25 H 0.33 3.92 8.98 -39.29 -0.35 3.57 16 26 H 0.03 0.44 8.04 -51.93 -0.42 0.02 16 27 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.87 7.95 -51.93 -0.41 0.46 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 1.32 5.53 -51.93 -0.29 1.04 16 34 H 0.27 8.30 8.73 -40.82 -0.36 7.94 16 35 H 0.06 1.40 6.63 -51.93 -0.34 1.06 16 36 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 277.62 15.07 4.18 4.18 Total: -1.00 -30.74 277.62 -7.72 -38.47 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.30 Total: 2.81 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -0.79 Total: -18.21 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.30 Total: -48.90 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -4.52 Total: 21.66 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.74 -7.72 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235767648.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.633 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds