Wall clock time and date at job start Sun Mar 29 2020 21:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46883 * 2 1 4 4 N 1.46898 * 109.47077 * 119.99585 * 2 1 3 5 5 C 1.53003 * 109.47514 * 239.99801 * 2 1 3 6 6 N 1.46895 * 109.47231 * 184.35554 * 5 2 1 7 7 C 1.46839 * 111.00041 * 163.02557 * 6 5 2 8 8 C 1.53035 * 109.52573 * 185.83547 * 7 6 5 9 9 C 1.53123 * 109.28128 * 300.82055 * 8 7 6 10 10 C 1.53124 * 109.15642 * 57.64916 * 9 8 7 11 11 H 1.08998 * 109.50056 * 62.33408 * 10 9 8 12 12 C 1.50703 * 109.50091 * 182.40670 * 10 9 8 13 13 H 1.08000 * 119.99947 * 114.29824 * 12 10 9 14 14 C 1.37882 * 120.00043 * 294.30466 * 12 10 9 15 15 N 1.31510 * 119.99974 * 155.66966 * 14 12 10 16 16 Si 1.86801 * 119.99730 * 335.66668 * 14 12 10 17 17 H 1.48507 * 109.46685 * 180.02562 * 16 14 12 18 18 H 1.48492 * 109.47024 * 60.00436 * 16 14 12 19 19 H 1.48501 * 109.47037 * 299.99946 * 16 14 12 20 20 C 1.46857 * 110.99866 * 287.23085 * 6 5 2 21 21 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47165 * 300.00642 * 1 2 3 23 23 H 1.09007 * 109.46915 * 60.00285 * 1 2 3 24 24 H 1.00902 * 110.99745 * 300.00330 * 4 2 1 25 25 H 1.00899 * 110.99919 * 63.95621 * 4 2 1 26 26 H 1.09000 * 109.46636 * 64.35000 * 5 2 1 27 27 H 1.09006 * 109.46517 * 304.35366 * 5 2 1 28 28 H 1.09001 * 109.46527 * 65.82295 * 7 6 5 29 29 H 1.09001 * 109.45460 * 305.84515 * 7 6 5 30 30 H 1.09004 * 109.50997 * 180.87649 * 8 7 6 31 31 H 1.09008 * 109.50364 * 60.75787 * 8 7 6 32 32 H 1.09000 * 109.51796 * 297.75132 * 9 8 7 33 33 H 1.08995 * 109.57648 * 177.58621 * 9 8 7 34 34 H 0.97001 * 120.00196 * 354.95351 * 15 14 12 35 35 H 1.09007 * 109.45548 * 54.14635 * 20 6 5 36 36 H 1.08996 * 109.45993 * 294.18095 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0401 -0.7213 -1.2492 6 7 3.5053 -0.8130 -1.1977 7 6 4.0028 -1.8232 -2.1402 8 6 5.5124 -1.9945 -1.9566 9 6 6.2073 -0.6527 -2.2039 10 6 5.6367 0.3935 -1.2423 11 1 5.8466 0.0961 -0.2149 12 6 6.2731 1.7312 -1.5189 13 1 5.6740 2.5465 -1.8966 14 6 7.6204 1.9143 -1.2898 15 7 8.2767 2.8505 -1.9395 16 14 8.5134 0.8323 -0.0563 17 1 9.9432 1.2289 0.0059 18 1 8.4110 -0.5877 -0.4781 19 1 7.8960 0.9964 1.2843 20 6 4.1236 0.4956 -1.4467 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.6960 -0.2348 2.0385 25 1 1.7502 -1.6647 1.1910 26 1 1.7418 -0.1644 -2.1375 27 1 1.6144 -1.7240 -1.2890 28 1 3.7953 -1.5012 -3.1607 29 1 3.5037 -2.7735 -1.9506 30 1 5.8840 -2.7331 -2.6669 31 1 5.7197 -2.3298 -0.9403 32 1 6.0324 -0.3360 -3.2321 33 1 7.2784 -0.7591 -2.0326 34 1 7.8313 3.3632 -2.6322 35 1 3.7121 1.2294 -0.7535 36 1 3.9154 0.8066 -2.4704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235767648.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:56 Heat of formation + Delta-G solvation = -36.150177 kcal Electronic energy + Delta-G solvation = -14942.193635 eV Core-core repulsion = 12652.313121 eV Total energy + Delta-G solvation = -2289.880515 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04646 -37.26932 -35.17733 -33.32369 -31.86435 -29.73446 -27.26292 -26.53541 -24.01450 -22.62486 -21.26488 -20.36790 -19.61322 -17.23034 -16.76037 -16.14855 -15.68622 -15.27984 -15.11628 -14.73240 -14.39863 -14.22172 -13.98801 -13.63179 -13.35420 -13.13521 -12.82001 -12.44686 -12.29888 -12.21078 -11.88359 -11.72567 -11.55030 -11.31598 -11.03500 -10.69800 -10.33044 -9.30675 -9.04337 -8.73377 -6.30910 1.48490 1.55092 1.76240 2.51629 3.01165 3.07085 3.78173 3.95649 4.09957 4.22009 4.24435 4.30291 4.43999 4.47807 4.61768 4.65425 4.76427 4.81276 4.88483 4.91922 5.02400 5.07841 5.12457 5.23740 5.26958 5.35376 5.55317 5.80718 5.98359 6.08548 6.30504 6.41234 6.55668 6.62967 6.84470 7.41751 8.62008 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035656 B = 0.009014 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.083425 B = 3105.570895 C = 3316.549968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 H 0.051 0.949 4 N -0.835 5.835 5 C 0.061 3.939 6 N -0.524 5.524 7 C 0.061 3.939 8 C -0.112 4.112 9 C -0.116 4.116 10 C 0.030 3.970 11 H 0.024 0.976 12 C -0.613 4.613 13 H 0.013 0.987 14 C -0.011 4.011 15 N -0.933 5.933 16 Si 1.080 2.920 17 H -0.288 1.288 18 H -0.248 1.248 19 H -0.269 1.269 20 C 0.095 3.905 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.341 0.659 25 H 0.344 0.656 26 H 0.026 0.974 27 H 0.089 0.911 28 H 0.018 0.982 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.252 0.748 35 H 0.050 0.950 36 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.071 -11.955 3.494 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.019 4.019 3 H 0.069 0.931 4 N -0.365 5.365 5 C -0.067 4.067 6 N -0.248 5.248 7 C -0.066 4.066 8 C -0.150 4.150 9 C -0.154 4.154 10 C 0.011 3.989 11 H 0.042 0.958 12 C -0.650 4.650 13 H 0.031 0.969 14 C -0.209 4.209 15 N -0.568 5.568 16 Si 0.901 3.099 17 H -0.215 1.215 18 H -0.172 1.172 19 H -0.195 1.195 20 C -0.033 4.033 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.154 0.846 25 H 0.158 0.842 26 H 0.045 0.955 27 H 0.107 0.893 28 H 0.036 0.964 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -11.762 -12.153 4.408 17.478 hybrid contribution -2.552 1.394 -1.809 3.425 sum -14.314 -10.758 2.598 18.094 Atomic orbital electron populations 1.22523 0.95715 1.02734 1.02518 1.21322 0.92581 0.97205 0.90829 0.93105 1.58551 1.68127 1.06606 1.03255 1.22211 0.87574 1.00936 0.95984 1.61877 1.05448 1.06403 1.51090 1.22097 0.95790 0.95882 0.92856 1.21615 0.94742 0.96453 1.02159 1.21877 0.99094 0.95743 0.98720 1.18864 0.91986 0.93096 0.94969 0.95795 1.22171 0.95936 0.98161 1.48772 0.96853 1.27094 0.96007 0.98798 0.99045 1.70978 1.38669 1.24868 1.22272 0.83588 0.74705 0.76254 0.75311 1.21460 1.17205 1.19462 1.21732 0.95578 0.90094 0.95885 0.91345 0.91877 0.92279 0.84625 0.84237 0.95547 0.89252 0.96378 0.88687 0.90309 0.91554 0.95155 0.93954 0.93898 0.93151 0.98520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 9.48 71.98 0.68 -2.44 16 2 C 0.09 2.33 3.32 44.92 0.15 2.48 16 3 H 0.05 1.57 6.86 -2.39 -0.02 1.55 16 4 N -0.84 -20.15 8.99 -168.68 -1.52 -21.67 16 5 C 0.06 1.65 4.61 86.31 0.40 2.05 16 6 N -0.52 -18.06 4.34 -896.37 -3.89 -21.95 16 7 C 0.06 1.90 5.44 86.33 0.47 2.37 16 8 C -0.11 -3.82 6.09 30.65 0.19 -3.64 16 9 C -0.12 -5.20 5.00 30.68 0.15 -5.04 16 10 C 0.03 1.50 1.86 -11.49 -0.02 1.48 16 11 H 0.02 1.23 6.71 -2.39 -0.02 1.21 16 12 C -0.61 -36.65 8.76 25.60 0.22 -36.42 16 13 H 0.01 0.87 7.99 -2.91 -0.02 0.84 16 14 C -0.01 -0.63 5.26 84.66 0.45 -0.19 16 15 N -0.93 -60.21 13.70 21.45 0.29 -59.92 16 16 Si 1.08 52.54 26.57 68.60 1.82 54.37 16 17 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 18 H -0.25 -10.86 6.00 99.48 0.60 -10.26 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 C 0.10 4.16 4.53 86.32 0.39 4.55 16 21 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.34 7.07 9.04 -89.69 -0.81 6.26 16 25 H 0.34 6.96 8.98 -89.69 -0.81 6.16 16 26 H 0.03 0.74 8.04 -2.39 -0.02 0.72 16 27 H 0.09 1.96 7.85 -2.38 -0.02 1.94 16 28 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 2.32 7.95 -2.39 -0.02 2.31 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.97 5.53 -2.39 -0.01 1.95 16 34 H 0.25 16.50 8.73 -92.71 -0.81 15.69 16 35 H 0.05 2.30 6.63 -2.38 -0.02 2.28 16 36 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 Total: -1.00 -68.10 277.62 -0.93 -69.03 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -0.71 Total: 14.95 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 3.08 Total: -34.80 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -5.12 Total: -103.54 kcal Atomic # 14 Polarization: 52.54 SS G_CDS: 1.82 Total: 54.37 kcal Total: -68.10 -0.93 -69.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235767648.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.877 kcal (2) G-P(sol) polarization free energy of solvation -68.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds