Wall clock time and date at job start Sun Mar 29 2020 21:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33051 * 1 3 3 C 1.50700 * 120.00293 * 2 1 4 4 C 1.47329 * 119.99749 * 180.02562 * 2 1 3 5 5 C 1.40210 * 119.52194 * 245.01789 * 4 2 1 6 6 C 1.35921 * 121.16684 * 179.75794 * 5 4 2 7 7 C 1.41098 * 120.13333 * 0.48386 * 6 5 4 8 8 C 1.40358 * 120.46696 * 179.78673 * 7 6 5 9 9 H 1.08000 * 119.99926 * 208.65055 * 8 7 6 10 10 C 1.40314 * 120.00221 * 28.64196 * 8 7 6 11 11 N 1.30631 * 120.00277 * 197.67088 * 10 8 7 12 12 Si 1.86803 * 120.00072 * 17.67715 * 10 8 7 13 13 H 1.48495 * 109.46922 * 269.99681 * 12 10 8 14 14 H 1.48499 * 109.46678 * 29.99528 * 12 10 8 15 15 H 1.48498 * 109.47335 * 149.99594 * 12 10 8 16 16 C 1.46673 * 119.06468 * 359.50283 * 7 6 5 17 17 C 1.43203 * 120.55279 * 180.27266 * 16 7 6 18 18 N 5.94258 * 101.29532 * 212.32573 * 2 1 3 19 19 C 1.38998 * 118.89468 * 0.26038 * 16 7 6 20 20 H 1.08000 * 120.00270 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.00025 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.46996 * 240.00361 * 3 2 1 23 23 H 1.08994 * 109.46956 * 359.97438 * 3 2 1 24 24 H 1.08994 * 109.47261 * 119.99874 * 3 2 1 25 25 H 1.07997 * 119.41927 * 0.02562 * 5 4 2 26 26 H 1.07997 * 119.93723 * 180.24442 * 6 5 4 27 27 H 0.97002 * 119.99662 * 355.45936 * 11 10 8 28 28 H 1.07996 * 120.10729 * 179.97438 * 19 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3305 0.0000 0.0000 3 6 2.0841 1.3051 0.0000 4 6 2.0671 -1.2759 -0.0006 5 6 2.8588 -1.6172 1.1052 6 6 3.5485 -2.7878 1.1421 7 6 3.4852 -3.6818 0.0523 8 6 4.1982 -4.8906 0.0812 9 1 4.5373 -5.3395 -0.8407 10 6 4.4703 -5.5155 1.3076 11 7 5.4033 -6.4266 1.3836 12 14 3.4984 -5.0448 2.8318 13 1 4.1845 -3.9290 3.5313 14 1 2.1332 -4.6155 2.4352 15 1 3.4047 -6.2156 3.7404 16 6 2.6591 -3.3332 -1.1083 17 6 2.5673 -4.2197 -2.2292 18 7 2.4945 -4.9243 -3.1161 19 6 1.9665 -2.1281 -1.1021 20 1 -0.5400 0.9353 0.0004 21 1 -0.5400 -0.9353 0.0004 22 1 2.7107 1.3628 -0.8901 23 1 1.3758 2.1335 -0.0005 24 1 2.7107 1.3628 0.8899 25 1 2.9183 -0.9398 1.9443 26 1 4.1491 -3.0325 2.0056 27 1 5.8627 -6.7185 0.5806 28 1 1.3527 -1.8516 -1.9466 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240835269.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:02 Heat of formation + Delta-G solvation = 30.111553 kcal Electronic energy + Delta-G solvation = -12965.809308 eV Core-core repulsion = 10752.559280 eV Total energy + Delta-G solvation = -2213.250028 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.085 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.88461 -37.34047 -36.52598 -35.04103 -32.00124 -31.52327 -27.91003 -26.92259 -24.09943 -23.09248 -20.77567 -20.17853 -17.94134 -16.73573 -16.54404 -15.91145 -15.60110 -15.08343 -14.56410 -14.48806 -14.27596 -13.98735 -13.83880 -13.45656 -13.12204 -12.98399 -12.53235 -12.38108 -12.08400 -11.87134 -11.58904 -11.46419 -10.94943 -9.95989 -9.67077 -9.62264 -9.20465 -6.74703 0.22636 0.69151 1.37386 1.47628 1.59978 1.79323 1.89254 2.12304 2.24815 2.58395 3.40097 3.44768 4.15370 4.16376 4.45074 4.49081 4.77490 4.85109 4.89787 4.99699 5.12520 5.21283 5.29104 5.33026 5.47011 5.60830 5.85190 5.89189 5.98486 6.13469 6.21208 6.41304 6.59089 6.80510 7.75260 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.027354 B = 0.011235 C = 0.008719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.363260 B = 2491.640430 C = 3210.661790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.112 4.112 4 C -0.185 4.185 5 C -0.022 4.022 6 C -0.250 4.250 7 C 0.123 3.877 8 C -0.516 4.516 9 H 0.043 0.957 10 C 0.014 3.986 11 N -0.810 5.810 12 Si 1.100 2.900 13 H -0.237 1.237 14 H -0.253 1.253 15 H -0.281 1.281 16 C -0.197 4.197 17 C 0.301 3.699 18 N -0.526 5.526 19 C -0.001 4.001 20 H 0.119 0.881 21 H 0.086 0.914 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.139 0.861 26 H 0.122 0.878 27 H 0.282 0.718 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.943 12.920 4.967 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.073 4.073 3 C -0.168 4.168 4 C -0.186 4.186 5 C -0.041 4.041 6 C -0.268 4.268 7 C 0.118 3.882 8 C -0.543 4.543 9 H 0.061 0.939 10 C -0.204 4.204 11 N -0.431 5.431 12 Si 0.918 3.082 13 H -0.161 1.161 14 H -0.177 1.177 15 H -0.208 1.208 16 C -0.202 4.202 17 C -0.008 4.008 18 N -0.205 5.205 19 C -0.022 4.022 20 H 0.137 0.863 21 H 0.105 0.895 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.157 0.843 26 H 0.140 0.860 27 H 0.093 0.907 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.070 11.448 5.135 13.938 hybrid contribution 0.798 -0.435 -2.039 2.233 sum -5.271 11.013 3.096 12.596 Atomic orbital electron populations 1.24328 0.94479 1.02000 1.02729 1.20504 0.94457 0.92939 0.99433 1.20864 1.00320 0.93303 1.02349 1.18413 1.07018 0.97134 0.96014 1.20851 0.91594 0.94832 0.96823 1.20906 1.08450 0.97003 1.00485 1.18727 0.86988 0.91996 0.90519 1.20703 1.31203 1.06888 0.95539 0.93870 1.28770 0.93756 0.92513 1.05318 1.70520 1.14063 1.24800 1.33719 0.83340 0.76838 0.77103 0.70891 1.16147 1.17713 1.20779 1.17041 1.11804 0.97401 0.93996 1.26042 0.90920 0.91907 0.91958 1.80966 1.13624 1.11737 1.14202 1.20951 0.93989 0.90200 0.97040 0.86301 0.89518 0.92025 0.90384 0.91056 0.84326 0.86017 0.90688 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.68 13.97 66.66 0.93 -3.75 15 2 C -0.07 -1.93 5.39 -18.63 -0.10 -2.03 15 3 C -0.11 -2.30 10.09 71.24 0.72 -1.59 15 4 C -0.18 -6.18 5.33 -20.07 -0.11 -6.29 15 5 C -0.02 -0.76 9.60 22.21 0.21 -0.55 15 6 C -0.25 -10.12 7.20 22.43 0.16 -9.95 15 7 C 0.12 5.82 5.31 -19.86 -0.11 5.72 15 8 C -0.52 -27.19 8.89 23.29 0.21 -26.98 15 9 H 0.04 2.53 7.62 -2.91 -0.02 2.51 15 10 C 0.01 0.71 5.42 85.38 0.46 1.17 15 11 N -0.81 -42.18 13.64 21.89 0.30 -41.88 15 12 Si 1.10 43.27 24.90 68.60 1.71 44.97 15 13 H -0.24 -8.03 6.43 99.48 0.64 -7.39 15 14 H -0.25 -9.74 7.03 99.48 0.70 -9.05 15 15 H -0.28 -10.79 7.11 99.48 0.71 -10.09 15 16 C -0.20 -8.85 5.93 -19.65 -0.12 -8.97 15 17 C 0.30 14.53 14.34 88.34 1.27 15.80 15 18 N -0.53 -26.37 18.53 18.99 0.35 -26.02 15 19 C 0.00 -0.04 9.39 22.79 0.21 0.17 15 20 H 0.12 2.15 7.87 -2.91 -0.02 2.13 15 21 H 0.09 2.20 8.05 -2.91 -0.02 2.18 15 22 H 0.06 1.31 8.14 -2.38 -0.02 1.29 15 23 H 0.08 1.25 7.81 -2.39 -0.02 1.24 15 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 15 25 H 0.14 3.73 8.06 -2.91 -0.02 3.71 15 26 H 0.12 4.72 4.38 -2.91 -0.01 4.71 15 27 H 0.28 14.79 8.72 -92.71 -0.81 13.98 15 28 H 0.12 4.09 8.06 -2.91 -0.02 4.07 15 Total: -1.00 -56.70 255.35 7.16 -49.54 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.05 Total: 10.63 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 3.75 Total: -37.25 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: 0.65 Total: -67.90 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.71 Total: 44.97 kcal Total: -56.70 7.16 -49.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240835269.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.656 kcal (2) G-P(sol) polarization free energy of solvation -56.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds