Wall clock time and date at job start Sun Mar 29 2020 21:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.46152 * 2 1 4 4 C 1.53039 * 109.46350 * 119.96948 * 2 1 3 5 5 C 1.53123 * 109.31189 * 179.16930 * 4 2 1 6 6 H 1.09000 * 109.52057 * 62.27355 * 5 4 2 7 7 N 1.46898 * 109.52408 * 182.46200 * 5 4 2 8 8 C 1.46896 * 111.00222 * 205.00056 * 7 5 4 9 9 C 1.53001 * 109.47369 * 180.02562 * 8 7 5 10 10 C 1.50693 * 109.47303 * 179.97438 * 9 8 7 11 11 H 1.08005 * 120.00145 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99950 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00438 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99954 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46837 * 60.00193 * 14 12 10 16 16 H 1.48496 * 109.47153 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47045 * 300.00338 * 14 12 10 18 18 C 1.53129 * 109.15931 * 302.40768 * 5 4 2 19 19 C 1.53036 * 109.30712 * 57.59477 * 18 5 4 20 20 N 1.46842 * 109.46062 * 240.02126 * 2 1 3 21 21 H 1.08996 * 109.47612 * 300.02514 * 1 2 3 22 22 H 1.08997 * 109.46830 * 60.02914 * 1 2 3 23 23 H 1.09004 * 109.46743 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.50563 * 299.13262 * 4 2 1 25 25 H 1.09003 * 109.50107 * 59.21244 * 4 2 1 26 26 H 1.00899 * 110.99986 * 328.96095 * 7 5 4 27 27 H 1.09003 * 109.46765 * 299.99834 * 8 7 5 28 28 H 1.08999 * 109.47141 * 59.99950 * 8 7 5 29 29 H 1.08998 * 109.47141 * 300.00292 * 9 8 7 30 30 H 1.09005 * 109.46861 * 60.00094 * 9 8 7 31 31 H 0.97002 * 120.00199 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.46579 * 297.65836 * 18 5 4 33 33 H 1.08997 * 109.53656 * 177.57437 * 18 5 4 34 34 H 1.09001 * 109.45883 * 180.82826 * 19 18 5 35 35 H 1.08995 * 109.46584 * 60.85899 * 19 18 5 36 36 H 1.00903 * 110.99924 * 54.14783 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5710 -0.7370 1.2361 6 1 3.9463 0.2859 1.2680 7 7 4.0648 -1.4790 2.4037 8 6 5.4202 -1.0456 2.7683 9 6 5.8995 -1.8395 3.9853 10 6 7.2901 -1.3953 4.3589 11 1 7.7828 -0.6236 3.7860 12 6 7.9332 -1.9733 5.4328 13 7 7.3332 -2.9127 6.1308 14 14 9.6569 -1.4222 5.8964 15 1 9.6420 0.0261 6.2243 16 1 10.1221 -2.1928 7.0775 17 1 10.5768 -1.6621 4.7557 18 6 4.0547 -1.4190 -0.0468 19 6 3.4864 -0.6778 -1.2591 20 7 2.0192 -0.6918 -1.1993 21 1 -0.3634 0.5142 0.8897 22 1 -0.3633 0.5134 -0.8902 23 1 -0.3633 -1.0277 0.0005 24 1 1.6896 -0.1980 2.1400 25 1 1.6653 -1.7444 1.2581 26 1 3.4330 -1.3861 3.1849 27 1 6.0955 -1.2219 1.9311 28 1 5.4093 0.0174 3.0089 29 1 5.2242 -1.6638 4.8227 30 1 5.9104 -2.9025 3.7443 31 1 7.7859 -3.3196 6.8861 32 1 3.7123 -2.4537 -0.0594 33 1 5.1438 -1.3955 -0.0836 34 1 3.8173 -1.1701 -2.1736 35 1 3.8403 0.3530 -1.2533 36 1 1.6194 -0.2926 -2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246277061.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:57 Heat of formation + Delta-G solvation = -43.943293 kcal Electronic energy + Delta-G solvation = -14197.648963 eV Core-core repulsion = 11907.430513 eV Total energy + Delta-G solvation = -2290.218450 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.08665 -37.09212 -35.08206 -33.23360 -32.51816 -29.76701 -27.92481 -26.00686 -23.87095 -22.70465 -21.83634 -20.61487 -18.51150 -17.35873 -16.76582 -16.40337 -15.98379 -15.76821 -15.34720 -14.57858 -14.55084 -14.22396 -14.00982 -13.20731 -13.18602 -12.87980 -12.75080 -12.68592 -12.51911 -12.36454 -12.01894 -11.90249 -11.62364 -11.41580 -11.32287 -11.05205 -10.57158 -9.38154 -9.31115 -8.21117 -6.33328 1.39569 1.43181 1.51229 2.39867 3.12016 3.20582 3.27120 3.78600 3.94260 4.10838 4.22432 4.39857 4.46238 4.48836 4.56766 4.58832 4.62280 4.83797 4.88546 4.95858 5.02512 5.05116 5.13051 5.23023 5.33428 5.41353 5.45737 5.65536 5.77817 6.09375 6.14160 6.28378 6.53656 6.56918 6.83438 7.36068 8.90935 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065697 B = 0.005164 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.098822 B = 5421.322109 C = 5632.365743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.088 3.912 3 H 0.036 0.964 4 C -0.108 4.108 5 C 0.084 3.916 6 H 0.029 0.971 7 N -0.693 5.693 8 C 0.087 3.913 9 C 0.032 3.968 10 C -0.548 4.548 11 H 0.059 0.941 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.267 1.267 18 C -0.104 4.104 19 C 0.066 3.934 20 N -0.689 5.689 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.338 0.662 27 H 0.055 0.945 28 H 0.015 0.985 29 H -0.009 1.009 30 H -0.007 1.007 31 H 0.265 0.735 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.030 0.970 36 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.401 7.329 -13.820 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 H 0.054 0.946 4 C -0.146 4.146 5 C -0.025 4.025 6 H 0.047 0.953 7 N -0.324 5.324 8 C -0.042 4.042 9 C -0.005 4.005 10 C -0.586 4.586 11 H 0.078 0.922 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.792 3.208 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.191 1.191 18 C -0.143 4.143 19 C -0.064 4.064 20 N -0.323 5.323 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.156 0.844 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.010 0.990 30 H 0.012 0.988 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.194 6.064 -13.759 18.745 hybrid contribution 0.993 1.667 0.816 2.105 sum -10.201 7.732 -12.943 18.203 Atomic orbital electron populations 1.21770 0.92638 1.02654 1.02632 1.21431 0.96321 0.94526 0.89973 0.94628 1.21779 0.93152 1.01801 0.97864 1.21631 0.95390 0.94243 0.91279 0.95303 1.60536 1.03600 1.59408 1.08851 1.21789 0.89273 0.95604 0.97547 1.18915 0.94729 0.94736 0.92135 1.21574 1.01656 1.21425 1.13954 0.92240 1.25985 1.02704 0.94864 0.96088 1.70102 1.39798 1.27206 1.20034 0.85460 0.78877 0.78601 0.77847 1.19092 1.20651 1.19148 1.21548 0.99311 1.00126 0.93268 1.21846 0.87792 0.98392 0.98323 1.60283 1.07028 1.59776 1.05218 0.91449 0.91314 0.92180 0.91247 0.91254 0.84353 0.92649 0.96662 0.99033 0.98808 0.92671 0.91973 0.92899 0.89255 0.95150 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.43 71.98 0.68 -1.48 16 2 C 0.09 1.75 3.04 44.94 0.14 1.88 16 3 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 4 C -0.11 -2.67 4.64 30.65 0.14 -2.53 16 5 C 0.08 2.55 2.56 45.00 0.12 2.67 16 6 H 0.03 0.91 7.80 -2.39 -0.02 0.89 16 7 N -0.69 -26.07 6.31 -491.14 -3.10 -29.17 16 8 C 0.09 3.84 5.43 86.30 0.47 4.31 16 9 C 0.03 1.79 5.23 29.85 0.16 1.94 16 10 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 12 C 0.00 0.10 5.46 84.65 0.46 0.56 16 13 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 14 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 C -0.10 -2.97 5.59 30.65 0.17 -2.80 16 19 C 0.07 1.43 6.55 86.32 0.57 1.99 16 20 N -0.69 -13.56 6.50 -491.68 -3.20 -16.75 16 21 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 23 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.34 12.33 8.36 -89.69 -0.75 11.58 16 27 H 0.06 2.46 7.51 -2.39 -0.02 2.44 16 28 H 0.02 0.66 8.06 -2.39 -0.02 0.64 16 29 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 31 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.05 1.62 7.55 -2.39 -0.02 1.60 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.35 5.23 8.79 -89.69 -0.79 4.44 16 Total: -1.00 -65.10 287.68 -1.36 -66.46 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -0.50 Total: 15.49 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 3.13 Total: -25.30 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -6.01 Total: -103.49 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.10 -1.36 -66.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246277061.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.517 kcal (2) G-P(sol) polarization free energy of solvation -65.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds