Wall clock time and date at job start Sun Mar 29 2020 21:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46203 * 2 1 4 4 C 1.53040 * 109.45431 * 119.97491 * 2 1 3 5 5 C 1.53122 * 109.27764 * 60.82965 * 4 2 1 6 6 H 1.08997 * 109.57259 * 297.72112 * 5 4 2 7 7 N 1.46901 * 109.52107 * 177.55987 * 5 4 2 8 8 C 1.46896 * 110.99827 * 155.32150 * 7 5 4 9 9 C 1.52998 * 109.47026 * 180.02562 * 8 7 5 10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99302 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00436 * 179.72505 * 10 9 8 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47154 * 89.99418 * 14 12 10 16 16 H 1.48493 * 109.47010 * 209.99942 * 14 12 10 17 17 H 1.48502 * 109.46736 * 329.99638 * 14 12 10 18 18 C 1.53120 * 109.16041 * 57.65493 * 5 4 2 19 19 C 1.53034 * 109.28109 * 302.34544 * 18 5 4 20 20 N 1.46849 * 109.52410 * 59.17560 * 19 18 5 21 21 H 1.09004 * 109.47216 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47348 * 299.97542 * 1 2 3 23 23 H 1.08998 * 109.47167 * 59.97543 * 1 2 3 24 24 H 1.09003 * 109.50033 * 300.88823 * 4 2 1 25 25 H 1.09002 * 109.50391 * 180.77422 * 4 2 1 26 26 H 1.00905 * 110.99904 * 279.26778 * 7 5 4 27 27 H 1.09000 * 109.47613 * 59.99983 * 8 7 5 28 28 H 1.09002 * 109.46818 * 299.99488 * 8 7 5 29 29 H 1.09001 * 109.47671 * 59.99839 * 9 8 7 30 30 H 1.08998 * 109.47454 * 299.99836 * 9 8 7 31 31 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.50196 * 62.28570 * 18 5 4 33 33 H 1.08998 * 109.50311 * 182.40021 * 18 5 4 34 34 H 1.09001 * 109.46797 * 179.19184 * 19 18 5 35 35 H 1.09000 * 109.46423 * 299.16542 * 19 18 5 36 36 H 1.00907 * 110.99814 * 62.36063 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7210 1.2500 5 6 1.5438 -2.1696 1.2356 6 1 0.4544 -2.1829 1.2676 7 7 2.0781 -2.8830 2.4033 8 6 1.2211 -4.0206 2.7628 9 6 1.8082 -4.7367 3.9807 10 6 0.9287 -5.9034 4.3498 11 1 0.0395 -6.1128 3.7736 12 6 1.2617 -6.7064 5.4199 13 7 2.3473 -6.4546 6.1182 14 14 0.1719 -8.1530 5.8771 15 1 0.6242 -9.3640 5.1463 16 1 0.2592 -8.3958 7.3394 17 1 -1.2343 -7.8491 5.5088 18 6 2.0264 -2.8533 -0.0467 19 6 1.5172 -2.0706 -1.2591 20 7 2.0192 -0.6919 -1.1993 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5134 0.8902 23 1 -0.3633 0.5142 -0.8897 24 1 1.6635 -0.2163 2.1399 25 1 3.1296 -0.7094 1.2578 26 1 3.0277 -3.1830 2.2405 27 1 1.1673 -4.7144 1.9238 28 1 0.2203 -3.6604 3.0011 29 1 1.8616 -4.0427 4.8195 30 1 2.8091 -5.0968 3.7429 31 1 2.5819 -7.0197 6.8709 32 1 3.1162 -2.8753 -0.0593 33 1 1.6408 -3.8721 -0.0831 34 1 1.8710 -2.5466 -2.1736 35 1 0.4272 -2.0606 -1.2533 36 1 3.0272 -0.6719 -1.2425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246277062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:59 Heat of formation + Delta-G solvation = -19.932491 kcal Electronic energy + Delta-G solvation = -14382.160246 eV Core-core repulsion = 12092.982983 eV Total energy + Delta-G solvation = -2289.177263 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.51076 -35.59465 -33.03475 -31.77456 -30.71167 -28.04093 -27.35065 -24.06420 -22.74245 -21.72669 -20.66214 -19.12580 -16.61186 -16.26349 -15.05064 -14.76850 -14.57673 -14.36728 -14.10091 -13.40025 -13.06530 -12.74171 -12.55263 -12.08168 -11.80928 -11.66225 -11.58676 -11.12855 -11.02763 -10.95819 -10.66526 -10.51831 -10.16623 -9.99853 -9.38280 -9.16983 -8.45038 -8.35460 -7.76557 -6.00423 -4.03186 3.31325 3.37503 3.40966 4.17531 4.42744 4.64339 4.77005 4.94556 5.08407 5.25496 5.31913 5.35508 5.41498 5.47851 5.57834 5.76061 5.83298 5.92084 6.02668 6.10785 6.12781 6.21526 6.31101 6.39862 6.45394 6.97070 6.99091 7.29899 7.49996 7.72410 7.82379 7.95659 8.07860 8.42904 9.04053 9.60688 11.11048 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061439 B = 0.005392 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.624910 B = 5192.027655 C = 5254.504138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.082 3.918 3 H 0.080 0.920 4 C -0.138 4.138 5 C 0.087 3.913 6 H 0.076 0.924 7 N -0.687 5.687 8 C 0.067 3.933 9 C 0.025 3.975 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.187 4.187 19 C 0.057 3.943 20 N -0.683 5.683 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.334 0.666 27 H 0.014 0.986 28 H 0.056 0.944 29 H 0.024 0.976 30 H 0.013 0.987 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 10.672 -12.879 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 H 0.098 0.902 4 C -0.178 4.178 5 C -0.024 4.024 6 H 0.094 0.906 7 N -0.316 5.316 8 C -0.061 4.061 9 C -0.012 4.012 10 C -0.561 4.561 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.228 4.228 19 C -0.073 4.073 20 N -0.312 5.312 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.152 0.848 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.605 11.289 -12.661 17.039 hybrid contribution 0.296 -2.039 0.374 2.094 sum -1.309 9.250 -12.287 15.435 Atomic orbital electron populations 1.21914 0.94660 1.02293 1.01697 1.21580 0.95896 0.97484 0.87890 0.90171 1.22263 1.00692 0.95967 0.98904 1.21603 0.99451 0.93263 0.88079 0.90614 1.60700 1.06013 1.29309 1.35564 1.22164 0.96192 0.89336 0.98442 1.19068 0.95851 0.94422 0.91897 1.21176 1.09336 1.12001 1.13549 0.92801 1.25003 0.95263 0.97802 0.96280 1.69975 1.24597 1.39024 1.19686 0.86582 0.80965 0.82778 0.77611 1.20696 1.21154 1.19873 1.23022 1.01169 1.00926 0.97704 1.22001 1.00821 0.87708 0.96778 1.60728 1.15014 1.15845 1.39568 0.92224 0.92195 0.92319 0.90855 0.92233 0.84799 0.96740 0.92518 0.95715 0.96903 0.92983 0.92085 0.91437 0.91169 0.90615 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.59 37.16 0.32 -1.23 16 2 C 0.08 0.87 3.69 -67.72 -0.25 0.62 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.14 -1.73 5.21 -26.65 -0.14 -1.87 16 5 C 0.09 1.26 2.22 -67.59 -0.15 1.10 16 6 H 0.08 1.16 6.22 -51.93 -0.32 0.84 16 7 N -0.69 -12.40 6.25 -106.60 -0.67 -13.07 16 8 C 0.07 1.43 5.42 -3.83 -0.02 1.41 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 10 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 11 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 14 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.19 -2.40 5.33 -26.65 -0.14 -2.54 16 19 C 0.06 0.63 6.26 -3.83 -0.02 0.60 16 20 N -0.68 -7.17 6.67 -106.76 -0.71 -7.88 16 21 H 0.06 0.67 4.80 -51.93 -0.25 0.42 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.33 5.93 8.45 -39.29 -0.33 5.60 16 27 H 0.01 0.30 7.49 -51.93 -0.39 -0.08 16 28 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 29 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.07 0.95 7.52 -51.93 -0.39 0.56 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.85 6.19 -51.93 -0.32 0.53 16 36 H 0.34 3.24 8.86 -39.29 -0.35 2.90 16 LS Contribution 280.46 15.07 4.23 4.23 Total: -1.00 -29.81 280.46 -8.52 -38.33 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.12 Total: 3.19 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.96 Total: -15.12 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.64 Total: -47.43 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.81 -8.52 -38.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246277062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.393 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds