Wall clock time and date at job start Sun Mar 29 2020 21:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46203 * 2 1 4 4 C 1.53040 * 109.45431 * 119.97491 * 2 1 3 5 5 C 1.53122 * 109.27764 * 60.82965 * 4 2 1 6 6 H 1.08997 * 109.57259 * 297.72112 * 5 4 2 7 7 N 1.46901 * 109.52107 * 177.55987 * 5 4 2 8 8 C 1.46896 * 110.99827 * 155.32150 * 7 5 4 9 9 C 1.52998 * 109.47026 * 180.02562 * 8 7 5 10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99302 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00436 * 179.72505 * 10 9 8 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47154 * 89.99418 * 14 12 10 16 16 H 1.48493 * 109.47010 * 209.99942 * 14 12 10 17 17 H 1.48502 * 109.46736 * 329.99638 * 14 12 10 18 18 C 1.53120 * 109.16041 * 57.65493 * 5 4 2 19 19 C 1.53034 * 109.28109 * 302.34544 * 18 5 4 20 20 N 1.46849 * 109.52410 * 59.17560 * 19 18 5 21 21 H 1.09004 * 109.47216 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47348 * 299.97542 * 1 2 3 23 23 H 1.08998 * 109.47167 * 59.97543 * 1 2 3 24 24 H 1.09003 * 109.50033 * 300.88823 * 4 2 1 25 25 H 1.09002 * 109.50391 * 180.77422 * 4 2 1 26 26 H 1.00905 * 110.99904 * 279.26778 * 7 5 4 27 27 H 1.09000 * 109.47613 * 59.99983 * 8 7 5 28 28 H 1.09002 * 109.46818 * 299.99488 * 8 7 5 29 29 H 1.09001 * 109.47671 * 59.99839 * 9 8 7 30 30 H 1.08998 * 109.47454 * 299.99836 * 9 8 7 31 31 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.50196 * 62.28570 * 18 5 4 33 33 H 1.08998 * 109.50311 * 182.40021 * 18 5 4 34 34 H 1.09001 * 109.46797 * 179.19184 * 19 18 5 35 35 H 1.09000 * 109.46423 * 299.16542 * 19 18 5 36 36 H 1.00907 * 110.99814 * 62.36063 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7210 1.2500 5 6 1.5438 -2.1696 1.2356 6 1 0.4544 -2.1829 1.2676 7 7 2.0781 -2.8830 2.4033 8 6 1.2211 -4.0206 2.7628 9 6 1.8082 -4.7367 3.9807 10 6 0.9287 -5.9034 4.3498 11 1 0.0395 -6.1128 3.7736 12 6 1.2617 -6.7064 5.4199 13 7 2.3473 -6.4546 6.1182 14 14 0.1719 -8.1530 5.8771 15 1 0.6242 -9.3640 5.1463 16 1 0.2592 -8.3958 7.3394 17 1 -1.2343 -7.8491 5.5088 18 6 2.0264 -2.8533 -0.0467 19 6 1.5172 -2.0706 -1.2591 20 7 2.0192 -0.6919 -1.1993 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5134 0.8902 23 1 -0.3633 0.5142 -0.8897 24 1 1.6635 -0.2163 2.1399 25 1 3.1296 -0.7094 1.2578 26 1 3.0277 -3.1830 2.2405 27 1 1.1673 -4.7144 1.9238 28 1 0.2203 -3.6604 3.0011 29 1 1.8616 -4.0427 4.8195 30 1 2.8091 -5.0968 3.7429 31 1 2.5819 -7.0197 6.8709 32 1 3.1162 -2.8753 -0.0593 33 1 1.6408 -3.8721 -0.0831 34 1 1.8710 -2.5466 -2.1736 35 1 0.4272 -2.0606 -1.2533 36 1 3.0272 -0.6719 -1.2425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246277062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:59 Heat of formation + Delta-G solvation = -41.639019 kcal Electronic energy + Delta-G solvation = -14383.101512 eV Core-core repulsion = 12092.982983 eV Total energy + Delta-G solvation = -2290.118529 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.54334 -37.10070 -35.05045 -32.70912 -32.35730 -29.55304 -28.41317 -25.99497 -23.71054 -22.92516 -22.53391 -20.11605 -18.56659 -17.57289 -16.51739 -16.27001 -15.92571 -15.72442 -15.20805 -14.63954 -14.51866 -14.29284 -13.87891 -13.50657 -13.16452 -12.91787 -12.77277 -12.66170 -12.55345 -12.41730 -12.13209 -11.94938 -11.59594 -11.44696 -11.34287 -11.05452 -10.59429 -9.42583 -9.17663 -8.22979 -6.35124 1.38702 1.40503 1.51777 2.38541 3.10362 3.20290 3.44344 3.71555 3.93580 4.11771 4.24520 4.30422 4.41183 4.47713 4.52256 4.58174 4.63649 4.83190 4.90387 4.93844 5.03051 5.11762 5.12810 5.22210 5.25586 5.39269 5.41981 5.63492 5.75901 6.10525 6.11938 6.26135 6.49488 6.52689 6.81881 7.34526 8.89269 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061439 B = 0.005392 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.624910 B = 5192.027655 C = 5254.504138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.087 3.913 3 H 0.096 0.904 4 C -0.131 4.131 5 C 0.086 3.914 6 H 0.068 0.932 7 N -0.694 5.694 8 C 0.087 3.913 9 C 0.032 3.968 10 C -0.547 4.547 11 H 0.059 0.941 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.263 1.263 18 C -0.180 4.180 19 C 0.063 3.937 20 N -0.679 5.679 21 H 0.048 0.952 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.336 0.664 27 H 0.017 0.983 28 H 0.053 0.947 29 H -0.007 1.007 30 H -0.010 1.010 31 H 0.265 0.735 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 10.811 -14.085 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 H 0.114 0.886 4 C -0.171 4.171 5 C -0.024 4.024 6 H 0.086 0.914 7 N -0.323 5.323 8 C -0.042 4.042 9 C -0.005 4.005 10 C -0.585 4.585 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.792 3.208 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.187 1.187 18 C -0.221 4.221 19 C -0.067 4.067 20 N -0.309 5.309 21 H 0.067 0.933 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.154 0.846 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.011 0.989 30 H 0.008 0.992 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.331 11.448 -13.893 18.152 hybrid contribution 0.563 -2.030 0.749 2.236 sum -1.768 9.417 -13.144 16.266 Atomic orbital electron populations 1.21906 0.94509 1.01783 1.02277 1.21582 0.95997 0.97952 0.86794 0.88586 1.22218 1.00744 0.94436 0.99727 1.21687 0.98989 0.94230 0.87517 0.91395 1.60635 1.05707 1.27866 1.38087 1.21749 0.96022 0.90096 0.96299 1.18919 0.94849 0.93827 0.92943 1.21603 1.09888 1.12905 1.14096 0.92227 1.25989 0.96708 1.00946 0.96047 1.70110 1.26416 1.40435 1.20232 0.85400 0.79158 0.78787 0.77419 1.19620 1.20587 1.18731 1.22937 1.01269 1.00228 0.97647 1.21967 1.00736 0.87731 0.96261 1.60739 1.15683 1.15318 1.39122 0.93262 0.91898 0.91498 0.91789 0.92038 0.84644 0.96432 0.92834 0.98889 0.99158 0.92674 0.91758 0.92808 0.89742 0.90780 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.59 71.98 0.62 -2.19 16 2 C 0.09 1.66 3.69 44.94 0.17 1.83 16 3 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.13 -3.11 5.21 30.65 0.16 -2.95 16 5 C 0.09 2.42 2.22 45.00 0.10 2.52 16 6 H 0.07 2.04 6.22 -2.39 -0.01 2.03 16 7 N -0.69 -25.19 6.25 -491.16 -3.07 -28.26 16 8 C 0.09 3.79 5.42 86.30 0.47 4.25 16 9 C 0.03 1.76 5.23 29.85 0.16 1.91 16 10 C -0.55 -31.82 9.11 25.60 0.23 -31.59 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 12 C 0.00 0.07 5.46 84.65 0.46 0.53 16 13 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 14 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 C -0.18 -4.38 5.33 30.65 0.16 -4.22 16 19 C 0.06 1.26 6.26 86.32 0.54 1.80 16 20 N -0.68 -12.54 6.67 -491.68 -3.28 -15.82 16 21 H 0.05 1.04 4.80 -2.38 -0.01 1.03 16 22 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 26 H 0.34 12.01 8.45 -89.69 -0.76 11.25 16 27 H 0.02 0.75 7.49 -2.39 -0.02 0.73 16 28 H 0.05 2.34 8.06 -2.39 -0.02 2.32 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 32 H 0.06 1.53 8.10 -2.38 -0.02 1.51 16 33 H 0.05 1.46 7.52 -2.39 -0.02 1.44 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.52 6.19 -2.39 -0.01 1.51 16 36 H 0.35 5.68 8.86 -89.69 -0.79 4.89 16 Total: -1.00 -63.66 280.46 -1.47 -65.13 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -0.50 Total: 17.73 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 3.07 Total: -28.11 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -6.07 Total: -101.43 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.66 -1.47 -65.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246277062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.494 kcal (2) G-P(sol) polarization free energy of solvation -63.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds