Wall clock time and date at job start Sun Mar 29 2020 21:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.45340 * 2 1 4 4 C 1.53038 * 109.46338 * 240.03135 * 2 1 3 5 5 C 1.53126 * 109.27425 * 299.16033 * 4 2 1 6 6 H 1.08999 * 109.52159 * 62.32106 * 5 4 2 7 7 N 1.46906 * 109.52098 * 182.44086 * 5 4 2 8 8 C 1.46901 * 110.99793 * 204.87333 * 7 5 4 9 9 C 1.53000 * 109.46769 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.46912 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99751 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46999 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46942 * 119.99666 * 14 12 10 17 17 H 1.48504 * 109.46979 * 239.99580 * 14 12 10 18 18 C 1.53120 * 109.21533 * 302.37813 * 5 4 2 19 19 C 1.53045 * 109.27313 * 57.55910 * 18 5 4 20 20 N 1.46843 * 109.46561 * 119.97320 * 2 1 3 21 21 H 1.09003 * 109.47137 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47504 * 299.97137 * 1 2 3 23 23 H 1.09006 * 109.47209 * 59.96971 * 1 2 3 24 24 H 1.08996 * 109.50167 * 179.22662 * 4 2 1 25 25 H 1.08997 * 109.53835 * 59.12229 * 4 2 1 26 26 H 1.00898 * 110.99995 * 80.92256 * 7 5 4 27 27 H 1.09001 * 109.46874 * 60.00179 * 8 7 5 28 28 H 1.08992 * 109.47407 * 300.00197 * 8 7 5 29 29 H 1.09002 * 109.47398 * 300.00295 * 9 8 7 30 30 H 1.09001 * 109.47194 * 60.00475 * 9 8 7 31 31 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.50105 * 177.56338 * 18 5 4 33 33 H 1.09000 * 109.50263 * 297.68585 * 18 5 4 34 34 H 1.08998 * 109.46195 * 180.87108 * 19 18 5 35 35 H 1.08999 * 109.40279 * 60.92639 * 19 18 5 36 36 H 1.00904 * 111.00193 * 294.18142 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 1.5442 -2.1695 -1.2356 6 1 0.4548 -2.1821 -1.2685 7 7 2.0788 -2.8828 -2.4034 8 6 1.2195 -4.0179 -2.7656 9 6 1.8069 -4.7339 -3.9834 10 6 0.9251 -5.8979 -4.3555 11 1 0.0345 -6.1059 -3.7811 12 6 1.2552 -6.6974 -5.4292 13 7 2.3395 -6.4439 -6.1290 14 14 0.1617 -8.1398 -5.8909 15 1 -0.9880 -8.2092 -4.9536 16 1 -0.3392 -7.9575 -7.2769 17 1 0.9435 -9.3998 -5.8087 18 6 2.0256 -2.8541 0.0466 19 6 1.5173 -2.0705 1.2590 20 7 2.0193 -0.6917 1.1993 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5134 0.8902 23 1 -0.3634 0.5143 -0.8898 24 1 3.1297 -0.7091 -1.2576 25 1 1.6643 -0.2165 -2.1403 26 1 3.0273 -3.1853 -2.2393 27 1 0.2200 -3.6549 -3.0052 28 1 1.1625 -4.7125 -1.9277 29 1 1.8635 -4.0390 -4.8213 30 1 2.8066 -5.0968 -3.7443 31 1 2.5720 -7.0065 -6.8842 32 1 1.6392 -3.8727 0.0824 33 1 3.1152 -2.8769 0.0600 34 1 1.8712 -2.5465 2.1735 35 1 0.4274 -2.0608 1.2529 36 1 1.7760 -0.1819 2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246277063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:02 Heat of formation + Delta-G solvation = -18.403770 kcal Electronic energy + Delta-G solvation = -14367.133314 eV Core-core repulsion = 12078.022341 eV Total energy + Delta-G solvation = -2289.110973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.35946 -35.62756 -33.05686 -31.68542 -30.86691 -28.06329 -27.16982 -24.10506 -22.69647 -21.83269 -20.61028 -18.66913 -16.88680 -16.25797 -15.08792 -14.69486 -14.66497 -14.38025 -13.69105 -13.45888 -13.11374 -12.84648 -12.63992 -12.13129 -11.97551 -11.70790 -11.19711 -11.11089 -10.93536 -10.86715 -10.62800 -10.49064 -10.13481 -9.94743 -9.30437 -9.09827 -8.50490 -8.33887 -7.70911 -5.98113 -4.00599 3.31996 3.39222 3.43261 4.14117 4.44259 4.66509 4.83337 4.98145 5.09240 5.21625 5.27257 5.37841 5.41976 5.53838 5.60707 5.77661 5.78814 5.92181 6.06039 6.07109 6.17449 6.31845 6.38894 6.48794 6.52167 6.99668 7.01327 7.30172 7.55255 7.76951 7.86721 8.01594 8.12070 8.46106 9.07018 9.63132 11.13402 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061750 B = 0.005379 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.332293 B = 5203.912071 C = 5269.593497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.083 3.917 3 H 0.080 0.920 4 C -0.098 4.098 5 C 0.085 3.915 6 H 0.071 0.929 7 N -0.687 5.687 8 C 0.067 3.933 9 C 0.024 3.976 10 C -0.520 4.520 11 H 0.054 0.946 12 C 0.057 3.943 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.147 4.147 19 C 0.059 3.941 20 N -0.684 5.684 21 H 0.062 0.938 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.337 0.663 27 H 0.055 0.945 28 H 0.014 0.986 29 H 0.025 0.975 30 H 0.013 0.987 31 H 0.260 0.740 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.033 0.967 36 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 11.144 13.676 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.027 4.027 3 H 0.098 0.902 4 C -0.137 4.137 5 C -0.025 4.025 6 H 0.089 0.911 7 N -0.316 5.316 8 C -0.061 4.061 9 C -0.013 4.013 10 C -0.559 4.559 11 H 0.072 0.928 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.187 4.187 19 C -0.071 4.071 20 N -0.314 5.314 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.154 0.846 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.609 11.312 12.754 17.123 hybrid contribution -1.321 -1.373 0.664 2.018 sum -2.930 9.939 13.418 16.953 Atomic orbital electron populations 1.22584 0.97952 1.02476 1.01856 1.21583 0.92358 0.97718 0.91075 0.90186 1.21561 1.01391 0.94928 0.95796 1.21627 0.98995 0.93662 0.88256 0.91121 1.60680 1.06104 1.29317 1.35498 1.22160 0.96139 0.89425 0.98415 1.19077 0.95888 0.94415 0.91931 1.21220 1.09182 1.12208 1.13324 0.92778 1.25005 0.95262 0.97791 0.96315 1.69985 1.24707 1.39094 1.19477 0.86541 0.80656 0.82478 0.78344 1.19805 1.20967 1.21028 1.22348 1.01865 0.98994 0.95454 1.21875 0.97249 0.89284 0.98695 1.60493 1.63200 1.02975 1.04733 0.91900 0.93237 0.91860 0.91325 0.91071 0.84574 0.92623 0.96758 0.95683 0.96820 0.93056 0.91683 0.91176 0.91286 0.94880 0.84564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 8.58 37.15 0.32 -1.60 16 2 C 0.08 0.90 3.68 -67.73 -0.25 0.65 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.10 -1.29 5.22 -26.65 -0.14 -1.43 16 5 C 0.09 1.27 2.22 -67.58 -0.15 1.12 16 6 H 0.07 1.10 6.22 -51.93 -0.32 0.78 16 7 N -0.69 -12.58 6.25 -106.59 -0.67 -13.25 16 8 C 0.07 1.44 5.42 -3.82 -0.02 1.42 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 10 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 11 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 14 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 C -0.15 -1.99 5.35 -26.65 -0.14 -2.13 16 19 C 0.06 0.66 6.25 -3.83 -0.02 0.64 16 20 N -0.68 -7.26 6.65 -106.76 -0.71 -7.97 16 21 H 0.06 0.71 4.80 -51.93 -0.25 0.46 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.34 6.07 8.45 -39.29 -0.33 5.74 16 27 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 28 H 0.01 0.30 7.50 -51.93 -0.39 -0.09 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.06 0.93 7.53 -51.93 -0.39 0.54 16 33 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.37 6.19 -51.93 -0.32 0.05 16 36 H 0.34 2.91 8.90 -39.29 -0.35 2.56 16 LS Contribution 280.52 15.07 4.23 4.23 Total: -1.00 -30.08 280.52 -8.52 -38.60 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.12 Total: 2.67 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -0.96 Total: -14.59 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.64 Total: -47.76 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.08 -8.52 -38.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246277063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.192 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds