Wall clock time and date at job start Sun Mar 29 2020 21:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.45340 * 2 1 4 4 C 1.53038 * 109.46338 * 240.03135 * 2 1 3 5 5 C 1.53126 * 109.27425 * 299.16033 * 4 2 1 6 6 H 1.08999 * 109.52159 * 62.32106 * 5 4 2 7 7 N 1.46906 * 109.52098 * 182.44086 * 5 4 2 8 8 C 1.46901 * 110.99793 * 204.87333 * 7 5 4 9 9 C 1.53000 * 109.46769 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.46912 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99751 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46999 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46942 * 119.99666 * 14 12 10 17 17 H 1.48504 * 109.46979 * 239.99580 * 14 12 10 18 18 C 1.53120 * 109.21533 * 302.37813 * 5 4 2 19 19 C 1.53045 * 109.27313 * 57.55910 * 18 5 4 20 20 N 1.46843 * 109.46561 * 119.97320 * 2 1 3 21 21 H 1.09003 * 109.47137 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47504 * 299.97137 * 1 2 3 23 23 H 1.09006 * 109.47209 * 59.96971 * 1 2 3 24 24 H 1.08996 * 109.50167 * 179.22662 * 4 2 1 25 25 H 1.08997 * 109.53835 * 59.12229 * 4 2 1 26 26 H 1.00898 * 110.99995 * 80.92256 * 7 5 4 27 27 H 1.09001 * 109.46874 * 60.00179 * 8 7 5 28 28 H 1.08992 * 109.47407 * 300.00197 * 8 7 5 29 29 H 1.09002 * 109.47398 * 300.00295 * 9 8 7 30 30 H 1.09001 * 109.47194 * 60.00475 * 9 8 7 31 31 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.50105 * 177.56338 * 18 5 4 33 33 H 1.09000 * 109.50263 * 297.68585 * 18 5 4 34 34 H 1.08998 * 109.46195 * 180.87108 * 19 18 5 35 35 H 1.08999 * 109.40279 * 60.92639 * 19 18 5 36 36 H 1.00904 * 111.00193 * 294.18142 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 1.5442 -2.1695 -1.2356 6 1 0.4548 -2.1821 -1.2685 7 7 2.0788 -2.8828 -2.4034 8 6 1.2195 -4.0179 -2.7656 9 6 1.8069 -4.7339 -3.9834 10 6 0.9251 -5.8979 -4.3555 11 1 0.0345 -6.1059 -3.7811 12 6 1.2552 -6.6974 -5.4292 13 7 2.3395 -6.4439 -6.1290 14 14 0.1617 -8.1398 -5.8909 15 1 -0.9880 -8.2092 -4.9536 16 1 -0.3392 -7.9575 -7.2769 17 1 0.9435 -9.3998 -5.8087 18 6 2.0256 -2.8541 0.0466 19 6 1.5173 -2.0705 1.2590 20 7 2.0193 -0.6917 1.1993 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5134 0.8902 23 1 -0.3634 0.5143 -0.8898 24 1 3.1297 -0.7091 -1.2576 25 1 1.6643 -0.2165 -2.1403 26 1 3.0273 -3.1853 -2.2393 27 1 0.2200 -3.6549 -3.0052 28 1 1.1625 -4.7125 -1.9277 29 1 1.8635 -4.0390 -4.8213 30 1 2.8066 -5.0968 -3.7443 31 1 2.5720 -7.0065 -6.8842 32 1 1.6392 -3.8727 0.0824 33 1 3.1152 -2.8769 0.0600 34 1 1.8712 -2.5465 2.1735 35 1 0.4274 -2.0608 1.2529 36 1 1.7760 -0.1819 2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246277063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:02 Heat of formation + Delta-G solvation = -40.408176 kcal Electronic energy + Delta-G solvation = -14368.087496 eV Core-core repulsion = 12078.022341 eV Total energy + Delta-G solvation = -2290.065156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40599 -37.12154 -35.07383 -32.64994 -32.49039 -29.70309 -28.15066 -26.03877 -23.68797 -23.07270 -22.50278 -19.71410 -18.55562 -17.79109 -16.56150 -16.22113 -15.99750 -15.74883 -14.98507 -14.71605 -14.35506 -14.28137 -13.91511 -13.71497 -13.16158 -13.05325 -12.83704 -12.66999 -12.49215 -12.19497 -12.10464 -11.85721 -11.57079 -11.49988 -11.33664 -10.92756 -10.58154 -9.35493 -9.19471 -8.21393 -6.33278 1.39619 1.40272 1.53611 2.39738 3.11971 3.29607 3.32327 3.82306 3.94945 4.13460 4.18919 4.32265 4.47091 4.51576 4.53121 4.59913 4.63976 4.79913 4.85789 4.99466 5.03742 5.07030 5.16641 5.17696 5.28508 5.42378 5.45094 5.66607 5.78571 6.11188 6.14855 6.30250 6.52054 6.60323 6.84135 7.36227 8.91128 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061750 B = 0.005379 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.332293 B = 5203.912071 C = 5269.593497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.088 3.912 3 H 0.096 0.904 4 C -0.095 4.095 5 C 0.086 3.914 6 H 0.066 0.934 7 N -0.693 5.693 8 C 0.087 3.913 9 C 0.031 3.969 10 C -0.545 4.545 11 H 0.060 0.940 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.277 1.277 18 C -0.143 4.143 19 C 0.064 3.936 20 N -0.687 5.687 21 H 0.049 0.951 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.337 0.663 27 H 0.053 0.947 28 H 0.018 0.982 29 H -0.007 1.007 30 H -0.009 1.009 31 H 0.264 0.736 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 11.382 15.022 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.022 4.022 3 H 0.114 0.886 4 C -0.133 4.133 5 C -0.024 4.024 6 H 0.084 0.916 7 N -0.323 5.323 8 C -0.042 4.042 9 C -0.006 4.006 10 C -0.583 4.583 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.793 3.207 15 H -0.186 1.186 16 H -0.203 1.203 17 H -0.202 1.202 18 C -0.183 4.183 19 C -0.066 4.066 20 N -0.319 5.319 21 H 0.068 0.932 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.012 0.988 30 H 0.009 0.991 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.690 11.574 14.130 18.462 hybrid contribution -0.937 -1.396 0.244 1.699 sum -3.626 10.178 14.374 17.982 Atomic orbital electron populations 1.22536 0.97268 1.01875 1.02781 1.21535 0.92804 0.98025 0.89884 0.88552 1.21519 1.00865 0.93737 0.97199 1.21702 0.98654 0.94479 0.87588 0.91575 1.60621 1.05770 1.27951 1.37952 1.21756 0.95988 0.90132 0.96301 1.18931 0.94888 0.93837 0.92971 1.21633 1.09709 1.13088 1.13870 0.92222 1.25991 0.96727 1.00927 0.96092 1.70118 1.26541 1.40523 1.20043 0.85353 0.78769 0.78392 0.78232 1.18580 1.20265 1.20223 1.22262 1.01404 0.98732 0.95869 1.21808 0.97457 0.89482 0.97868 1.60434 1.63320 1.02797 1.05381 0.93201 0.91396 0.91910 0.92098 0.91669 0.84532 0.92811 0.96407 0.98833 0.99109 0.92697 0.92718 0.91781 0.89865 0.94420 0.82766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 8.58 71.98 0.62 -2.71 16 2 C 0.09 1.70 3.68 44.94 0.17 1.86 16 3 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 4 C -0.09 -2.40 5.22 30.65 0.16 -2.24 16 5 C 0.09 2.52 2.22 45.00 0.10 2.62 16 6 H 0.07 2.02 6.22 -2.39 -0.01 2.01 16 7 N -0.69 -25.78 6.25 -491.14 -3.07 -28.85 16 8 C 0.09 3.81 5.42 86.30 0.47 4.28 16 9 C 0.03 1.72 5.23 29.85 0.16 1.87 16 10 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 11 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 12 C 0.00 0.03 5.46 84.65 0.46 0.49 16 13 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 14 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 15 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 C -0.14 -3.75 5.35 30.65 0.16 -3.59 16 19 C 0.06 1.30 6.25 86.33 0.54 1.84 16 20 N -0.69 -12.82 6.65 -491.67 -3.27 -16.09 16 21 H 0.05 1.03 4.80 -2.39 -0.01 1.02 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.34 12.44 8.45 -89.70 -0.76 11.68 16 27 H 0.05 2.36 8.06 -2.39 -0.02 2.34 16 28 H 0.02 0.76 7.50 -2.39 -0.02 0.74 16 29 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.05 1.53 7.53 -2.39 -0.02 1.52 16 33 H 0.06 1.75 8.10 -2.39 -0.02 1.73 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 0.75 6.19 -2.39 -0.01 0.73 16 36 H 0.35 4.93 8.90 -89.69 -0.80 4.13 16 Total: -1.00 -64.47 280.52 -1.46 -65.93 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -0.50 Total: 16.87 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 3.07 Total: -27.15 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -6.06 Total: -102.50 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.47 -1.46 -65.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246277063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.527 kcal (2) G-P(sol) polarization free energy of solvation -64.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds