Wall clock time and date at job start Sun Mar 29 2020 21:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46235 * 2 1 4 4 C 1.53044 * 109.46127 * 240.02041 * 2 1 3 5 5 C 1.53117 * 109.27792 * 180.81426 * 4 2 1 6 6 C 1.53127 * 109.15989 * 57.65607 * 5 4 2 7 7 H 1.08997 * 109.50037 * 62.28538 * 6 5 4 8 8 N 1.46901 * 109.50334 * 182.40361 * 6 5 4 9 9 C 1.46893 * 110.99837 * 205.00318 * 8 6 5 10 10 C 1.53001 * 109.46697 * 180.02562 * 9 8 6 11 11 C 1.50709 * 109.46865 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00060 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99906 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00207 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99935 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47226 * 90.00073 * 15 13 11 17 17 H 1.48505 * 109.47290 * 209.99866 * 15 13 11 18 18 H 1.48502 * 109.47284 * 329.99887 * 15 13 11 19 19 C 1.53038 * 109.27941 * 302.34585 * 6 5 4 20 20 N 1.46830 * 109.51757 * 59.17550 * 19 6 5 21 21 H 1.09002 * 109.46761 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46665 * 299.99954 * 1 2 3 23 23 H 1.08991 * 109.47182 * 59.99673 * 1 2 3 24 24 H 1.09001 * 109.49858 * 300.75871 * 4 2 1 25 25 H 1.09000 * 109.49965 * 60.87421 * 4 2 1 26 26 H 1.08997 * 109.52073 * 177.56286 * 5 4 2 27 27 H 1.09004 * 109.52347 * 297.75632 * 5 4 2 28 28 H 1.00901 * 110.99765 * 81.04288 * 8 6 5 29 29 H 1.09001 * 109.46952 * 299.99828 * 9 8 6 30 30 H 1.08993 * 109.47614 * 59.99957 * 9 8 6 31 31 H 1.09001 * 109.47209 * 299.99586 * 10 9 8 32 32 H 1.08996 * 109.47656 * 60.00200 * 10 9 8 33 33 H 0.97001 * 120.00559 * 179.97438 * 14 13 11 34 34 H 1.08995 * 109.46433 * 179.19502 * 19 6 5 35 35 H 1.09004 * 109.46142 * 299.17444 * 19 6 5 36 36 H 1.00904 * 110.98205 * 174.15538 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2499 5 6 3.5710 -0.7364 -1.2355 6 6 4.0546 -1.4192 0.0470 7 1 3.7121 -2.4539 0.0597 8 7 5.5225 -1.3870 0.0962 9 6 6.0455 -2.4811 0.9251 10 6 7.5738 -2.4142 0.9526 11 6 8.1105 -3.5364 1.8036 12 1 7.4296 -4.2278 2.2776 13 6 9.4706 -3.6796 1.9777 14 7 10.2998 -2.8374 1.4009 15 14 10.1358 -5.0701 3.0329 16 1 10.3691 -6.2669 2.1852 17 1 11.4155 -4.6489 3.6577 18 1 9.1515 -5.4000 4.0949 19 6 3.4863 -0.6780 1.2593 20 7 2.0193 -0.6919 1.1993 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.6657 -1.7448 -1.2575 25 1 1.6896 -0.1983 -2.1399 26 1 3.9379 -1.2867 -2.1018 27 1 3.9459 0.2866 -1.2670 28 1 5.8536 -0.4929 0.4264 29 1 5.6596 -2.3846 1.9399 30 1 5.7308 -3.4368 0.5061 31 1 7.9601 -2.5105 -0.0621 32 1 7.8882 -1.4585 1.3719 33 1 11.2567 -2.9379 1.5237 34 1 3.8172 -1.1702 2.1738 35 1 3.8402 0.3530 1.2533 36 1 1.6197 -0.2927 2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246281417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:58 Heat of formation + Delta-G solvation = -22.673867 kcal Electronic energy + Delta-G solvation = -14178.631823 eV Core-core repulsion = 11889.335685 eV Total energy + Delta-G solvation = -2289.296138 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.03986 -35.64212 -33.12285 -31.84939 -31.28468 -28.68998 -25.85690 -23.89045 -23.27721 -21.22567 -20.66395 -19.52406 -16.56338 -16.14670 -15.23777 -14.56924 -14.35108 -14.27343 -14.13992 -13.67696 -13.19647 -12.73474 -12.50043 -12.14313 -12.01861 -11.92187 -11.17918 -10.98801 -10.90472 -10.82981 -10.58842 -10.43099 -10.34507 -9.98093 -9.31042 -9.11556 -8.50213 -8.33255 -7.77247 -5.97719 -4.00195 3.33855 3.39742 3.43138 4.05842 4.46096 4.70930 4.77854 4.95122 5.09931 5.13624 5.29538 5.38260 5.46818 5.56156 5.60835 5.73345 5.79050 5.87661 5.99849 6.02087 6.12145 6.34073 6.39664 6.46808 6.52776 6.96392 7.01303 7.32180 7.54736 7.75842 7.86043 7.99263 8.11144 8.46186 9.07204 9.63559 11.13780 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.072394 B = 0.005048 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.681542 B = 5545.966627 C = 5730.317523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.034 0.966 4 C -0.111 4.111 5 C -0.109 4.109 6 C 0.090 3.910 7 H 0.081 0.919 8 N -0.684 5.684 9 C 0.066 3.934 10 C 0.024 3.976 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.031 3.969 20 N -0.683 5.683 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.334 0.666 29 H 0.015 0.985 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.074 0.926 35 H 0.028 0.972 36 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.978 6.358 -2.647 18.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 H 0.052 0.948 4 C -0.150 4.150 5 C -0.147 4.147 6 C -0.022 4.022 7 H 0.099 0.901 8 N -0.314 5.314 9 C -0.062 4.062 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.101 4.101 20 N -0.315 5.315 21 H 0.083 0.917 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.152 0.848 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.723 5.419 -3.550 17.934 hybrid contribution 0.452 0.557 1.819 1.956 sum -16.271 5.976 -1.730 17.420 Atomic orbital electron populations 1.21823 0.94621 1.02511 1.01356 1.21505 0.94806 0.95146 0.91364 0.94782 1.21632 0.96044 1.01204 0.96094 1.21571 0.94050 1.00676 0.98406 1.21585 0.88300 0.99667 0.92599 0.90107 1.60743 1.05829 1.07550 1.57279 1.22187 0.98991 0.92412 0.92605 1.19079 0.87733 0.96837 0.97656 1.21188 0.91694 1.12930 1.30164 0.92747 1.25000 0.97121 0.96255 0.95985 1.69972 1.02713 1.36674 1.43977 0.86590 0.78349 0.82430 0.80594 1.20615 1.21243 1.19916 1.22748 0.87564 0.98897 1.00842 1.60311 1.07363 1.59251 1.04531 0.91746 0.93024 0.92241 0.91189 0.91756 0.91101 0.92543 0.84842 0.96632 0.92319 0.95671 0.96891 0.93014 0.90762 0.95364 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.43 37.16 0.35 -0.89 16 2 C 0.08 0.86 3.04 -67.72 -0.21 0.66 16 3 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.11 -1.24 5.37 -26.65 -0.14 -1.38 16 5 C -0.11 -1.44 5.61 -26.61 -0.15 -1.59 16 6 C 0.09 1.37 2.63 -67.63 -0.18 1.19 16 7 H 0.08 1.35 7.80 -51.93 -0.41 0.94 16 8 N -0.68 -12.50 6.25 -106.64 -0.67 -13.16 16 9 C 0.07 1.42 5.42 -3.83 -0.02 1.40 16 10 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 11 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.26 13.29 55.43 0.74 -26.53 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.03 0.42 5.80 -3.84 -0.02 0.40 16 20 N -0.68 -8.12 6.50 -106.77 -0.69 -8.81 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.33 5.91 8.46 -39.29 -0.33 5.58 16 29 H 0.02 0.33 7.47 -51.93 -0.39 -0.06 16 30 H 0.06 1.28 8.06 -51.93 -0.42 0.87 16 31 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.07 1.10 7.49 -51.93 -0.39 0.71 16 35 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 36 H 0.34 3.47 8.79 -39.29 -0.35 3.13 16 LS Contribution 287.67 15.07 4.34 4.34 Total: -1.00 -29.99 287.67 -8.70 -38.70 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.47 Total: 2.05 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -0.93 Total: -13.47 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.62 Total: -48.50 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.99 -8.70 -38.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246281417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.022 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds