Wall clock time and date at job start Sun Mar 29 2020 21:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46235 * 2 1 4 4 C 1.53044 * 109.46127 * 240.02041 * 2 1 3 5 5 C 1.53117 * 109.27792 * 180.81426 * 4 2 1 6 6 C 1.53127 * 109.15989 * 57.65607 * 5 4 2 7 7 H 1.08997 * 109.50037 * 62.28538 * 6 5 4 8 8 N 1.46901 * 109.50334 * 182.40361 * 6 5 4 9 9 C 1.46893 * 110.99837 * 205.00318 * 8 6 5 10 10 C 1.53001 * 109.46697 * 180.02562 * 9 8 6 11 11 C 1.50709 * 109.46865 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00060 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99906 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00207 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99935 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47226 * 90.00073 * 15 13 11 17 17 H 1.48505 * 109.47290 * 209.99866 * 15 13 11 18 18 H 1.48502 * 109.47284 * 329.99887 * 15 13 11 19 19 C 1.53038 * 109.27941 * 302.34585 * 6 5 4 20 20 N 1.46830 * 109.51757 * 59.17550 * 19 6 5 21 21 H 1.09002 * 109.46761 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46665 * 299.99954 * 1 2 3 23 23 H 1.08991 * 109.47182 * 59.99673 * 1 2 3 24 24 H 1.09001 * 109.49858 * 300.75871 * 4 2 1 25 25 H 1.09000 * 109.49965 * 60.87421 * 4 2 1 26 26 H 1.08997 * 109.52073 * 177.56286 * 5 4 2 27 27 H 1.09004 * 109.52347 * 297.75632 * 5 4 2 28 28 H 1.00901 * 110.99765 * 81.04288 * 8 6 5 29 29 H 1.09001 * 109.46952 * 299.99828 * 9 8 6 30 30 H 1.08993 * 109.47614 * 59.99957 * 9 8 6 31 31 H 1.09001 * 109.47209 * 299.99586 * 10 9 8 32 32 H 1.08996 * 109.47656 * 60.00200 * 10 9 8 33 33 H 0.97001 * 120.00559 * 179.97438 * 14 13 11 34 34 H 1.08995 * 109.46433 * 179.19502 * 19 6 5 35 35 H 1.09004 * 109.46142 * 299.17444 * 19 6 5 36 36 H 1.00904 * 110.98205 * 174.15538 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2499 5 6 3.5710 -0.7364 -1.2355 6 6 4.0546 -1.4192 0.0470 7 1 3.7121 -2.4539 0.0597 8 7 5.5225 -1.3870 0.0962 9 6 6.0455 -2.4811 0.9251 10 6 7.5738 -2.4142 0.9526 11 6 8.1105 -3.5364 1.8036 12 1 7.4296 -4.2278 2.2776 13 6 9.4706 -3.6796 1.9777 14 7 10.2998 -2.8374 1.4009 15 14 10.1358 -5.0701 3.0329 16 1 10.3691 -6.2669 2.1852 17 1 11.4155 -4.6489 3.6577 18 1 9.1515 -5.4000 4.0949 19 6 3.4863 -0.6780 1.2593 20 7 2.0193 -0.6919 1.1993 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.6657 -1.7448 -1.2575 25 1 1.6896 -0.1983 -2.1399 26 1 3.9379 -1.2867 -2.1018 27 1 3.9459 0.2866 -1.2670 28 1 5.8536 -0.4929 0.4264 29 1 5.6596 -2.3846 1.9399 30 1 5.7308 -3.4368 0.5061 31 1 7.9601 -2.5105 -0.0621 32 1 7.8882 -1.4585 1.3719 33 1 11.2567 -2.9379 1.5237 34 1 3.8172 -1.1702 2.1738 35 1 3.8402 0.3530 1.2533 36 1 1.6197 -0.2927 2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246281417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:58 Heat of formation + Delta-G solvation = -44.299269 kcal Electronic energy + Delta-G solvation = -14179.569571 eV Core-core repulsion = 11889.335685 eV Total energy + Delta-G solvation = -2290.233886 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.12479 -37.10482 -35.10160 -32.94052 -32.68919 -30.30535 -27.20489 -25.55589 -24.44159 -22.54013 -22.25748 -20.64844 -18.54384 -17.46343 -16.52780 -16.41952 -15.72564 -15.57917 -15.05851 -14.89796 -14.63607 -14.32851 -13.98718 -13.38718 -13.22241 -12.97251 -12.82581 -12.79535 -12.45562 -12.13164 -11.92649 -11.80340 -11.70309 -11.38390 -11.34346 -11.07679 -10.57214 -9.47756 -9.25588 -8.20818 -6.32539 1.40296 1.42103 1.53107 2.40385 3.05957 3.12609 3.45959 3.85782 3.87769 4.04778 4.15555 4.34813 4.43288 4.49693 4.59811 4.63770 4.75964 4.82221 4.85582 4.94960 5.05524 5.08431 5.11934 5.30031 5.34940 5.41189 5.46638 5.66744 5.77293 5.98616 6.16485 6.30672 6.45435 6.53859 6.84483 7.36868 8.91444 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.072394 B = 0.005048 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.681542 B = 5545.966627 C = 5730.317523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.079 3.921 3 H 0.036 0.964 4 C -0.107 4.107 5 C -0.105 4.105 6 C 0.090 3.910 7 H 0.066 0.934 8 N -0.689 5.689 9 C 0.086 3.914 10 C 0.032 3.968 11 C -0.546 4.546 12 H 0.059 0.941 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.263 1.263 19 C 0.039 3.961 20 N -0.687 5.687 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.337 0.663 29 H 0.019 0.981 30 H 0.054 0.946 31 H -0.006 1.006 32 H -0.008 1.008 33 H 0.264 0.736 34 H 0.061 0.939 35 H 0.032 0.968 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.390 6.233 -2.209 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 H 0.054 0.946 4 C -0.145 4.145 5 C -0.143 4.143 6 C -0.020 4.020 7 H 0.085 0.915 8 N -0.319 5.319 9 C -0.043 4.043 10 C -0.006 4.006 11 C -0.584 4.584 12 H 0.078 0.922 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.187 1.187 19 C -0.093 4.093 20 N -0.320 5.320 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.155 0.845 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.012 0.988 32 H 0.010 0.990 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.168 5.303 -3.113 19.181 hybrid contribution 0.870 0.640 1.638 1.962 sum -17.298 5.943 -1.475 18.350 Atomic orbital electron populations 1.21776 0.92749 1.02576 1.02602 1.21597 0.96258 0.94849 0.90333 0.94583 1.21629 0.94057 1.01384 0.97467 1.21531 0.95833 1.00261 0.96676 1.21616 0.86205 0.99524 0.94701 0.91519 1.60668 1.08106 1.06743 1.56405 1.21780 0.95611 0.93481 0.93384 1.18930 0.91097 0.95333 0.95238 1.21611 0.92428 1.13680 1.30691 0.92227 1.25975 0.97417 0.99025 0.97256 1.70105 1.03181 1.38606 1.45305 0.85413 0.77769 0.78814 0.78825 1.19731 1.20586 1.18720 1.22523 0.88991 0.98546 0.99196 1.60286 1.05970 1.59997 1.05744 0.92237 0.92103 0.90743 0.91735 0.89610 0.91930 0.92281 0.84487 0.96256 0.92751 0.98781 0.98968 0.92700 0.92048 0.95000 0.83250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.43 71.98 0.68 -1.31 16 2 C 0.08 1.49 3.04 44.94 0.14 1.63 16 3 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.11 -2.16 5.37 30.65 0.16 -1.99 16 5 C -0.10 -2.66 5.61 30.68 0.17 -2.49 16 6 C 0.09 2.71 2.63 44.97 0.12 2.83 16 7 H 0.07 2.21 7.80 -2.39 -0.02 2.19 16 8 N -0.69 -25.41 6.25 -491.31 -3.07 -28.48 16 9 C 0.09 3.78 5.42 86.31 0.47 4.25 16 10 C 0.03 1.73 5.23 29.85 0.16 1.88 16 11 C -0.55 -31.85 9.11 25.60 0.23 -31.62 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 13 C 0.00 0.07 5.46 84.65 0.46 0.53 16 14 N -0.93 -57.68 13.29 21.45 0.28 -57.39 16 15 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 19 C 0.04 1.03 5.80 86.33 0.50 1.53 16 20 N -0.69 -15.15 6.50 -491.70 -3.20 -18.35 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.34 12.06 8.46 -89.69 -0.76 11.30 16 29 H 0.02 0.82 7.47 -2.39 -0.02 0.81 16 30 H 0.05 2.41 8.06 -2.39 -0.02 2.39 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.06 1.78 7.49 -2.39 -0.02 1.76 16 35 H 0.03 0.82 8.12 -2.38 -0.02 0.80 16 36 H 0.35 6.48 8.79 -89.69 -0.79 5.69 16 Total: -1.00 -64.16 287.67 -1.37 -65.54 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.51 Total: 16.59 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 3.09 Total: -24.76 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -5.98 Total: -104.23 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.16 -1.37 -65.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246281417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.239 kcal (2) G-P(sol) polarization free energy of solvation -64.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds