Wall clock time and date at job start Sun Mar 29 2020 21:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46051 * 2 1 4 4 C 1.53039 * 109.46565 * 119.97685 * 2 1 3 5 5 C 1.53117 * 109.28000 * 179.18756 * 4 2 1 6 6 C 1.53127 * 109.15902 * 302.34444 * 5 4 2 7 7 H 1.08999 * 109.50313 * 297.67293 * 6 5 4 8 8 N 1.46895 * 109.49996 * 177.59521 * 6 5 4 9 9 C 1.46906 * 110.99789 * 155.00026 * 8 6 5 10 10 C 1.53002 * 109.47053 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.46999 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00355 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99521 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00556 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47148 * 59.99955 * 15 13 11 17 17 H 1.48498 * 109.47295 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46848 * 299.99842 * 15 13 11 19 19 C 1.53034 * 109.27606 * 57.65520 * 6 5 4 20 20 N 1.46843 * 109.45613 * 240.02550 * 2 1 3 21 21 H 1.08999 * 109.47511 * 300.02157 * 1 2 3 22 22 H 1.08998 * 109.47426 * 60.02411 * 1 2 3 23 23 H 1.09005 * 109.46836 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.49756 * 59.24460 * 4 2 1 25 25 H 1.08997 * 109.53610 * 299.14727 * 4 2 1 26 26 H 1.08997 * 109.52226 * 182.44438 * 5 4 2 27 27 H 1.08991 * 109.57590 * 62.27968 * 5 4 2 28 28 H 1.00902 * 111.00273 * 278.95548 * 8 6 5 29 29 H 1.08992 * 109.47459 * 299.99826 * 9 8 6 30 30 H 1.09004 * 109.47040 * 59.99976 * 9 8 6 31 31 H 1.09001 * 109.47142 * 300.00160 * 10 9 8 32 32 H 1.09004 * 109.47006 * 60.00213 * 10 9 8 33 33 H 0.96999 * 120.00022 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.46354 * 60.83826 * 19 6 5 35 35 H 1.09008 * 109.46493 * 180.80188 * 19 6 5 36 36 H 1.00905 * 110.99940 * 54.14707 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7210 1.2499 5 6 3.5710 -0.7363 1.2354 6 6 4.0546 -1.4191 -0.0470 7 1 3.7128 -2.4540 -0.0594 8 7 5.5224 -1.3867 -0.0962 9 6 6.0456 -2.4809 -0.9252 10 6 7.5739 -2.4139 -0.9528 11 6 8.1106 -3.5367 -1.8027 12 1 7.4298 -4.2286 -2.2762 13 6 9.4708 -3.6808 -1.9759 14 7 10.2999 -2.8385 -1.3989 15 14 10.1361 -5.0721 -3.0299 16 1 9.6104 -4.9406 -4.4125 17 1 11.6195 -5.0079 -3.0557 18 1 9.7073 -6.3742 -2.4590 19 6 3.4862 -0.6779 -1.2593 20 7 2.0191 -0.6918 -1.1994 21 1 -0.3634 0.5141 0.8898 22 1 -0.3634 0.5134 -0.8902 23 1 -0.3633 -1.0277 0.0005 24 1 1.6658 -1.7447 1.2575 25 1 1.6897 -0.1988 2.1403 26 1 3.9380 -1.2866 2.1017 27 1 3.9467 0.2863 1.2675 28 1 5.8535 -0.4926 -0.4265 29 1 5.7310 -3.4366 -0.5062 30 1 5.6596 -2.3844 -1.9401 31 1 7.8882 -1.4581 -1.3721 32 1 7.9602 -2.5102 0.0619 33 1 11.2569 -2.9400 -1.5204 34 1 3.8402 0.3530 -1.2534 35 1 3.8171 -1.1701 -2.1739 36 1 1.6193 -0.2925 -2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246281418.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:00 Heat of formation + Delta-G solvation = -22.625811 kcal Electronic energy + Delta-G solvation = -14178.426571 eV Core-core repulsion = 11889.132516 eV Total energy + Delta-G solvation = -2289.294054 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.03913 -35.64171 -33.12143 -31.84826 -31.28328 -28.68933 -25.85600 -23.88984 -23.27720 -21.22529 -20.66290 -19.52399 -16.56231 -16.14405 -15.23736 -14.57062 -14.35157 -14.27316 -14.14036 -13.67711 -13.19536 -12.73415 -12.49789 -12.14131 -12.01685 -11.92014 -11.17560 -10.98644 -10.90404 -10.83058 -10.59278 -10.42877 -10.35194 -9.97576 -9.30797 -9.12698 -8.50186 -8.32806 -7.77249 -5.97456 -4.00008 3.35287 3.39398 3.42018 4.05814 4.46187 4.70961 4.77894 4.95136 5.09929 5.13678 5.29545 5.38370 5.46807 5.56190 5.60812 5.73394 5.79032 5.87631 5.99854 6.02116 6.12192 6.34092 6.39726 6.46877 6.52785 6.96354 7.01358 7.32204 7.54681 7.75701 7.86138 7.99362 8.11289 8.46308 9.07175 9.63639 11.14004 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.072402 B = 0.005047 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.634602 B = 5546.328897 C = 5730.531164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 H 0.034 0.966 4 C -0.111 4.111 5 C -0.109 4.109 6 C 0.090 3.910 7 H 0.081 0.919 8 N -0.684 5.684 9 C 0.066 3.934 10 C 0.025 3.975 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.031 3.969 20 N -0.682 5.682 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.334 0.666 29 H 0.058 0.942 30 H 0.015 0.985 31 H 0.013 0.987 32 H 0.025 0.975 33 H 0.261 0.739 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.962 6.359 2.646 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 H 0.052 0.948 4 C -0.150 4.150 5 C -0.147 4.147 6 C -0.022 4.022 7 H 0.099 0.901 8 N -0.314 5.314 9 C -0.062 4.062 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.100 4.100 20 N -0.315 5.315 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.152 0.848 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.701 5.419 3.554 17.915 hybrid contribution 0.441 0.555 -1.830 1.963 sum -16.261 5.975 1.724 17.409 Atomic orbital electron populations 1.21823 0.94623 1.02511 1.01356 1.21501 0.94804 0.95147 0.91363 0.94783 1.21628 0.96039 1.01209 0.96093 1.21568 0.94048 1.00684 0.98406 1.21584 0.88300 0.99667 0.92601 0.90106 1.60747 1.05830 1.07551 1.57273 1.22191 0.98995 0.92413 0.92601 1.19072 0.87725 0.96810 0.97657 1.21149 0.91685 1.12925 1.30290 0.92802 1.25002 0.97111 0.96264 0.95965 1.69967 1.02761 1.36731 1.43883 0.86645 0.77701 0.82703 0.80868 1.20300 1.21280 1.20203 1.22750 0.87561 0.98898 1.00838 1.60313 1.07359 1.59255 1.04529 0.92245 0.93020 0.91748 0.91193 0.91756 0.91109 0.92540 0.84845 0.92318 0.96634 0.96904 0.95673 0.92958 0.95361 0.90766 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.43 37.16 0.35 -0.90 16 2 C 0.08 0.87 3.04 -67.73 -0.21 0.66 16 3 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.11 -1.24 5.37 -26.65 -0.14 -1.38 16 5 C -0.11 -1.44 5.61 -26.61 -0.15 -1.59 16 6 C 0.09 1.37 2.63 -67.63 -0.18 1.19 16 7 H 0.08 1.35 7.80 -51.93 -0.41 0.94 16 8 N -0.68 -12.50 6.25 -106.64 -0.67 -13.17 16 9 C 0.07 1.42 5.42 -3.82 -0.02 1.40 16 10 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 11 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 12 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 C 0.03 0.42 5.80 -3.84 -0.02 0.40 16 20 N -0.68 -8.12 6.50 -106.76 -0.69 -8.81 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.33 5.91 8.46 -39.29 -0.33 5.58 16 29 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 30 H 0.02 0.33 7.47 -51.93 -0.39 -0.06 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 35 H 0.07 1.10 7.49 -51.92 -0.39 0.71 16 36 H 0.34 3.47 8.79 -39.29 -0.35 3.13 16 LS Contribution 287.67 15.07 4.34 4.34 Total: -1.00 -29.97 287.67 -8.70 -38.67 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.47 Total: 2.08 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -0.93 Total: -13.47 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.62 Total: -48.51 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.97 -8.70 -38.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246281418.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.044 kcal (2) G-P(sol) polarization free energy of solvation -29.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds