Wall clock time and date at job start Sun Mar 29 2020 21:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46051 * 2 1 4 4 C 1.53039 * 109.46565 * 119.97685 * 2 1 3 5 5 C 1.53117 * 109.28000 * 179.18756 * 4 2 1 6 6 C 1.53127 * 109.15902 * 302.34444 * 5 4 2 7 7 H 1.08999 * 109.50313 * 297.67293 * 6 5 4 8 8 N 1.46895 * 109.49996 * 177.59521 * 6 5 4 9 9 C 1.46906 * 110.99789 * 155.00026 * 8 6 5 10 10 C 1.53002 * 109.47053 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.46999 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00355 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99521 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00556 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47148 * 59.99955 * 15 13 11 17 17 H 1.48498 * 109.47295 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46848 * 299.99842 * 15 13 11 19 19 C 1.53034 * 109.27606 * 57.65520 * 6 5 4 20 20 N 1.46843 * 109.45613 * 240.02550 * 2 1 3 21 21 H 1.08999 * 109.47511 * 300.02157 * 1 2 3 22 22 H 1.08998 * 109.47426 * 60.02411 * 1 2 3 23 23 H 1.09005 * 109.46836 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.49756 * 59.24460 * 4 2 1 25 25 H 1.08997 * 109.53610 * 299.14727 * 4 2 1 26 26 H 1.08997 * 109.52226 * 182.44438 * 5 4 2 27 27 H 1.08991 * 109.57590 * 62.27968 * 5 4 2 28 28 H 1.00902 * 111.00273 * 278.95548 * 8 6 5 29 29 H 1.08992 * 109.47459 * 299.99826 * 9 8 6 30 30 H 1.09004 * 109.47040 * 59.99976 * 9 8 6 31 31 H 1.09001 * 109.47142 * 300.00160 * 10 9 8 32 32 H 1.09004 * 109.47006 * 60.00213 * 10 9 8 33 33 H 0.96999 * 120.00022 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.46354 * 60.83826 * 19 6 5 35 35 H 1.09008 * 109.46493 * 180.80188 * 19 6 5 36 36 H 1.00905 * 110.99940 * 54.14707 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7210 1.2499 5 6 3.5710 -0.7363 1.2354 6 6 4.0546 -1.4191 -0.0470 7 1 3.7128 -2.4540 -0.0594 8 7 5.5224 -1.3867 -0.0962 9 6 6.0456 -2.4809 -0.9252 10 6 7.5739 -2.4139 -0.9528 11 6 8.1106 -3.5367 -1.8027 12 1 7.4298 -4.2286 -2.2762 13 6 9.4708 -3.6808 -1.9759 14 7 10.2999 -2.8385 -1.3989 15 14 10.1361 -5.0721 -3.0299 16 1 9.6104 -4.9406 -4.4125 17 1 11.6195 -5.0079 -3.0557 18 1 9.7073 -6.3742 -2.4590 19 6 3.4862 -0.6779 -1.2593 20 7 2.0191 -0.6918 -1.1994 21 1 -0.3634 0.5141 0.8898 22 1 -0.3634 0.5134 -0.8902 23 1 -0.3633 -1.0277 0.0005 24 1 1.6658 -1.7447 1.2575 25 1 1.6897 -0.1988 2.1403 26 1 3.9380 -1.2866 2.1017 27 1 3.9467 0.2863 1.2675 28 1 5.8535 -0.4926 -0.4265 29 1 5.7310 -3.4366 -0.5062 30 1 5.6596 -2.3844 -1.9401 31 1 7.8882 -1.4581 -1.3721 32 1 7.9602 -2.5102 0.0619 33 1 11.2569 -2.9400 -1.5204 34 1 3.8402 0.3530 -1.2534 35 1 3.8171 -1.1701 -2.1739 36 1 1.6193 -0.2925 -2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246281418.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:00 Heat of formation + Delta-G solvation = -44.230354 kcal Electronic energy + Delta-G solvation = -14179.363414 eV Core-core repulsion = 11889.132516 eV Total energy + Delta-G solvation = -2290.230898 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.12423 -37.10427 -35.09992 -32.94018 -32.68777 -30.30471 -27.20370 -25.55467 -24.44254 -22.53912 -22.25750 -20.64885 -18.53969 -17.46267 -16.53002 -16.41984 -15.72509 -15.57755 -15.05938 -14.89825 -14.63329 -14.32388 -13.98602 -13.38826 -13.21963 -12.97132 -12.83040 -12.77862 -12.46929 -12.12734 -11.92225 -11.80533 -11.70234 -11.39514 -11.34513 -11.07812 -10.56515 -9.47734 -9.25607 -8.20553 -6.32364 1.40299 1.43808 1.51769 2.40559 3.05928 3.12747 3.45948 3.85810 3.87755 4.04781 4.15558 4.34810 4.43277 4.49702 4.59794 4.63748 4.75916 4.82226 4.85576 4.94901 5.05536 5.08463 5.11968 5.30053 5.34923 5.41147 5.46572 5.66754 5.77333 5.98594 6.16583 6.30666 6.45463 6.53859 6.84472 7.36956 8.91496 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.072402 B = 0.005047 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.634602 B = 5546.328897 C = 5730.531164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.079 3.921 3 H 0.036 0.964 4 C -0.107 4.107 5 C -0.105 4.105 6 C 0.090 3.910 7 H 0.066 0.934 8 N -0.689 5.689 9 C 0.086 3.914 10 C 0.032 3.968 11 C -0.547 4.547 12 H 0.060 0.940 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.267 1.267 19 C 0.039 3.961 20 N -0.687 5.687 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.337 0.663 29 H 0.054 0.946 30 H 0.019 0.981 31 H -0.008 1.008 32 H -0.006 1.006 33 H 0.264 0.736 34 H 0.032 0.968 35 H 0.061 0.939 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.384 6.230 2.194 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 H 0.054 0.946 4 C -0.145 4.145 5 C -0.143 4.143 6 C -0.020 4.020 7 H 0.085 0.915 8 N -0.319 5.319 9 C -0.043 4.043 10 C -0.006 4.006 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.092 4.092 20 N -0.320 5.320 21 H 0.093 0.907 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.155 0.845 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.010 0.990 32 H 0.012 0.988 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.158 5.301 3.103 19.168 hybrid contribution 0.861 0.640 -1.645 1.964 sum -17.297 5.941 1.458 18.347 Atomic orbital electron populations 1.21776 0.92751 1.02577 1.02602 1.21592 0.96257 0.94850 0.90333 0.94585 1.21625 0.94051 1.01388 0.97468 1.21529 0.95832 1.00267 0.96675 1.21614 0.86205 0.99521 0.94703 0.91520 1.60671 1.08108 1.06743 1.56404 1.21783 0.95612 0.93475 0.93388 1.18923 0.91093 0.95312 0.95236 1.21582 0.92432 1.13683 1.30813 0.92217 1.25980 0.97407 0.99044 0.97229 1.70104 1.03190 1.38665 1.45226 0.85466 0.77034 0.79165 0.79169 1.19087 1.20694 1.19184 1.22524 0.88987 0.98546 0.99192 1.60288 1.05965 1.60001 1.05741 0.90748 0.92097 0.92238 0.91740 0.89610 0.91943 0.92280 0.84490 0.92761 0.96241 0.98983 0.98795 0.92699 0.94997 0.92048 0.83245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.43 71.98 0.68 -1.31 16 2 C 0.08 1.49 3.04 44.94 0.14 1.63 16 3 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.11 -2.16 5.37 30.65 0.16 -1.99 16 5 C -0.10 -2.66 5.61 30.68 0.17 -2.49 16 6 C 0.09 2.71 2.63 44.97 0.12 2.83 16 7 H 0.07 2.21 7.80 -2.39 -0.02 2.19 16 8 N -0.69 -25.42 6.25 -491.29 -3.07 -28.49 16 9 C 0.09 3.78 5.42 86.30 0.47 4.24 16 10 C 0.03 1.74 5.23 29.85 0.16 1.90 16 11 C -0.55 -31.91 9.11 25.60 0.23 -31.67 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 13 C 0.00 0.08 5.46 84.65 0.46 0.55 16 14 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 15 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 C 0.04 1.03 5.80 86.32 0.50 1.53 16 20 N -0.69 -15.15 6.50 -491.69 -3.20 -18.35 16 21 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.34 12.06 8.46 -89.69 -0.76 11.31 16 29 H 0.05 2.41 8.06 -2.39 -0.02 2.39 16 30 H 0.02 0.83 7.47 -2.38 -0.02 0.81 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 33 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 35 H 0.06 1.78 7.49 -2.38 -0.02 1.76 16 36 H 0.35 6.48 8.79 -89.69 -0.79 5.69 16 Total: -1.00 -64.13 287.67 -1.37 -65.51 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.51 Total: 16.69 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 3.09 Total: -24.78 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -5.98 Total: -104.25 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -64.13 -1.37 -65.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246281418.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.275 kcal (2) G-P(sol) polarization free energy of solvation -64.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds