Wall clock time and date at job start Sun Mar 29 2020 21:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46577 * 2 1 4 4 C 1.53036 * 109.46207 * 119.96660 * 2 1 3 5 5 C 1.53115 * 109.27765 * 60.83760 * 4 2 1 6 6 C 1.53123 * 109.16049 * 57.65618 * 5 4 2 7 7 H 1.09002 * 109.53602 * 62.31024 * 6 5 4 8 8 N 1.46901 * 109.49989 * 182.40375 * 6 5 4 9 9 C 1.46906 * 110.99754 * 204.80049 * 8 6 5 10 10 C 1.53002 * 109.46973 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.46757 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00392 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99720 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00384 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99883 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47073 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46965 * 119.99728 * 15 13 11 18 18 H 1.48498 * 109.47469 * 239.99869 * 15 13 11 19 19 C 1.53030 * 109.27647 * 302.34438 * 6 5 4 20 20 N 1.46845 * 109.46811 * 240.02087 * 2 1 3 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 59.97975 * 1 2 3 23 23 H 1.09004 * 109.47261 * 299.97956 * 1 2 3 24 24 H 1.09001 * 109.50549 * 180.78114 * 4 2 1 25 25 H 1.09006 * 109.50742 * 300.89677 * 4 2 1 26 26 H 1.09000 * 109.52666 * 297.74978 * 5 4 2 27 27 H 1.09007 * 109.52246 * 177.55915 * 5 4 2 28 28 H 1.00903 * 111.00154 * 80.85182 * 8 6 5 29 29 H 1.09005 * 109.47214 * 300.00200 * 9 8 6 30 30 H 1.09001 * 109.47105 * 60.00010 * 9 8 6 31 31 H 1.08993 * 109.47317 * 299.99700 * 10 9 8 32 32 H 1.08993 * 109.47014 * 60.00369 * 10 9 8 33 33 H 0.96996 * 120.00204 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.46253 * 299.16255 * 19 6 5 35 35 H 1.08999 * 109.46763 * 179.19744 * 19 6 5 36 36 H 1.00903 * 110.99572 * 65.81883 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 1.2500 5 6 1.5443 -2.1694 1.2358 6 6 2.0270 -2.8531 -0.0464 7 1 3.1167 -2.8757 -0.0595 8 7 1.5075 -4.2263 -0.0953 9 6 2.3622 -5.0832 -0.9280 10 6 1.7900 -6.5019 -0.9552 11 6 2.6673 -7.3810 -1.8088 12 1 3.5449 -6.9690 -2.2847 13 6 2.3489 -8.7112 -1.9831 14 7 1.2800 -9.2129 -1.4041 15 14 3.4359 -9.8007 -3.0418 16 1 4.5679 -9.0014 -3.5756 17 1 3.9644 -10.9197 -2.2209 18 1 2.6399 -10.3474 -4.1700 19 6 1.5175 -2.0706 -1.2588 20 7 2.0194 -0.6918 -1.1993 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5142 -0.8898 23 1 -0.3634 0.5135 0.8902 24 1 3.1298 -0.7090 1.2578 25 1 1.6637 -0.2162 2.1400 26 1 0.4548 -2.1820 1.2674 27 1 1.9409 -2.6986 2.1023 28 1 0.5531 -4.2405 -0.4226 29 1 2.3965 -4.6861 -1.9425 30 1 3.3696 -5.1052 -0.5122 31 1 1.7555 -6.8993 0.0592 32 1 0.7829 -6.4795 -1.3712 33 1 1.0559 -10.1485 -1.5270 34 1 0.4275 -2.0609 -1.2529 35 1 1.8713 -2.5466 -2.1733 36 1 1.7761 -0.1820 -2.0353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246281419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:03 Heat of formation + Delta-G solvation = -18.347086 kcal Electronic energy + Delta-G solvation = -14345.684421 eV Core-core repulsion = 12056.575906 eV Total energy + Delta-G solvation = -2289.108515 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.36295 -35.61557 -33.04419 -31.84949 -30.81324 -28.43612 -26.49281 -23.97191 -23.39483 -21.56115 -20.59997 -18.69054 -16.79942 -16.24534 -15.04346 -14.79578 -14.62945 -14.38539 -13.68723 -13.51060 -13.20902 -12.89291 -12.45742 -12.19228 -12.12534 -11.94212 -11.20561 -10.99706 -10.92785 -10.70128 -10.45601 -10.42704 -10.30997 -9.97958 -9.31123 -9.10027 -8.47067 -8.33673 -7.76845 -5.97990 -4.00336 3.32614 3.39914 3.44312 4.12072 4.46109 4.66608 4.86561 5.00171 5.04012 5.11192 5.28899 5.38119 5.42247 5.53840 5.59774 5.76385 5.79805 5.86159 6.01891 6.06305 6.11654 6.36505 6.40457 6.48851 6.54313 6.96304 7.01459 7.32706 7.55074 7.75876 7.86287 7.99473 8.11089 8.46201 9.07337 9.63511 11.13561 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067555 B = 0.005292 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.378388 B = 5289.990115 C = 5399.608527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.082 3.918 3 H 0.078 0.922 4 C -0.111 4.111 5 C -0.109 4.109 6 C 0.090 3.910 7 H 0.080 0.920 8 N -0.684 5.684 9 C 0.066 3.934 10 C 0.024 3.976 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.026 3.974 20 N -0.681 5.681 21 H 0.065 0.935 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.334 0.666 29 H 0.015 0.985 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 17.544 2.666 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.028 4.028 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.148 4.148 6 C -0.021 4.021 7 H 0.098 0.902 8 N -0.314 5.314 9 C -0.062 4.062 10 C -0.013 4.013 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.105 4.105 20 N -0.311 5.311 21 H 0.084 0.916 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.151 0.849 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.327 16.987 3.564 17.360 hybrid contribution -0.717 -0.218 -1.813 1.962 sum -1.044 16.769 1.751 16.893 Atomic orbital electron populations 1.22587 0.97961 1.02650 1.01694 1.21555 0.92357 0.97545 0.91351 0.90423 1.21591 1.01386 0.95868 0.96124 1.21592 1.00616 0.94228 0.98316 1.21570 1.00007 0.87875 0.92630 0.90196 1.60754 1.06109 1.07331 1.57191 1.22188 0.96299 0.95137 0.92561 1.19080 0.95891 0.88688 0.97667 1.21227 1.10246 0.94492 1.29923 0.92695 1.25002 0.95275 0.98117 0.95985 1.69982 1.25568 1.13884 1.43908 0.86538 0.80634 0.80604 0.80235 1.19746 1.20972 1.21057 1.22783 0.97514 0.89488 1.00720 1.60469 1.63052 1.02948 1.04617 0.91623 0.93166 0.92207 0.91280 0.91756 0.92225 0.91264 0.84902 0.96646 0.92328 0.95670 0.96904 0.93073 0.94780 0.90960 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.82 8.59 37.16 0.32 -1.50 16 2 C 0.08 0.84 3.68 -67.73 -0.25 0.59 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -1.21 5.61 -26.65 -0.15 -1.36 16 5 C -0.11 -1.42 5.30 -26.61 -0.14 -1.57 16 6 C 0.09 1.37 2.63 -67.63 -0.18 1.19 16 7 H 0.08 1.33 7.80 -51.93 -0.41 0.92 16 8 N -0.68 -12.42 6.25 -106.63 -0.67 -13.09 16 9 C 0.07 1.42 5.42 -3.82 -0.02 1.40 16 10 C 0.02 0.64 5.23 -27.88 -0.15 0.49 16 11 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 15 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 C 0.03 0.35 5.51 -3.84 -0.02 0.33 16 20 N -0.68 -7.95 6.65 -106.76 -0.71 -8.66 16 21 H 0.06 0.72 4.80 -51.93 -0.25 0.47 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.77 6.56 -51.93 -0.34 0.42 16 27 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 28 H 0.33 5.86 8.47 -39.29 -0.33 5.53 16 29 H 0.02 0.33 7.45 -51.93 -0.39 -0.06 16 30 H 0.06 1.28 8.06 -51.93 -0.42 0.86 16 31 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.03 0.45 6.17 -51.93 -0.32 0.13 16 35 H 0.07 1.07 7.48 -51.93 -0.39 0.68 16 36 H 0.34 3.40 8.90 -39.29 -0.35 3.05 16 LS Contribution 280.45 15.07 4.23 4.23 Total: -1.00 -29.94 280.45 -8.55 -38.49 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.11 Total: 2.81 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -1.00 Total: -14.14 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.64 Total: -48.26 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.94 -8.55 -38.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246281419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.144 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds