Wall clock time and date at job start Sun Mar 29 2020 21:29:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09001 * 109.46577 * 2 1
4 4 C 1.53036 * 109.46207 * 119.96660 * 2 1 3
5 5 C 1.53115 * 109.27765 * 60.83760 * 4 2 1
6 6 C 1.53123 * 109.16049 * 57.65618 * 5 4 2
7 7 H 1.09002 * 109.53602 * 62.31024 * 6 5 4
8 8 N 1.46901 * 109.49989 * 182.40375 * 6 5 4
9 9 C 1.46906 * 110.99754 * 204.80049 * 8 6 5
10 10 C 1.53002 * 109.46973 * 180.02562 * 9 8 6
11 11 C 1.50703 * 109.46757 * 180.02562 * 10 9 8
12 12 H 1.08001 * 120.00392 * 359.97438 * 11 10 9
13 13 C 1.37876 * 119.99720 * 180.02562 * 11 10 9
14 14 N 1.31510 * 120.00384 * 359.97438 * 13 11 10
15 15 Si 1.86801 * 119.99883 * 179.97438 * 13 11 10
16 16 H 1.48501 * 109.47073 * 0.02562 * 15 13 11
17 17 H 1.48504 * 109.46965 * 119.99728 * 15 13 11
18 18 H 1.48498 * 109.47469 * 239.99869 * 15 13 11
19 19 C 1.53030 * 109.27647 * 302.34438 * 6 5 4
20 20 N 1.46845 * 109.46811 * 240.02087 * 2 1 3
21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3
22 22 H 1.09001 * 109.46832 * 59.97975 * 1 2 3
23 23 H 1.09004 * 109.47261 * 299.97956 * 1 2 3
24 24 H 1.09001 * 109.50549 * 180.78114 * 4 2 1
25 25 H 1.09006 * 109.50742 * 300.89677 * 4 2 1
26 26 H 1.09000 * 109.52666 * 297.74978 * 5 4 2
27 27 H 1.09007 * 109.52246 * 177.55915 * 5 4 2
28 28 H 1.00903 * 111.00154 * 80.85182 * 8 6 5
29 29 H 1.09005 * 109.47214 * 300.00200 * 9 8 6
30 30 H 1.09001 * 109.47105 * 60.00010 * 9 8 6
31 31 H 1.08993 * 109.47317 * 299.99700 * 10 9 8
32 32 H 1.08993 * 109.47014 * 60.00369 * 10 9 8
33 33 H 0.96996 * 120.00204 * 179.97438 * 14 13 11
34 34 H 1.09000 * 109.46253 * 299.16255 * 19 6 5
35 35 H 1.08999 * 109.46763 * 179.19744 * 19 6 5
36 36 H 1.00903 * 110.99572 * 65.81883 * 20 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0399 -0.7207 1.2500
5 6 1.5443 -2.1694 1.2358
6 6 2.0270 -2.8531 -0.0464
7 1 3.1167 -2.8757 -0.0595
8 7 1.5075 -4.2263 -0.0953
9 6 2.3622 -5.0832 -0.9280
10 6 1.7900 -6.5019 -0.9552
11 6 2.6673 -7.3810 -1.8088
12 1 3.5449 -6.9690 -2.2847
13 6 2.3489 -8.7112 -1.9831
14 7 1.2800 -9.2129 -1.4041
15 14 3.4359 -9.8007 -3.0418
16 1 4.5679 -9.0014 -3.5756
17 1 3.9644 -10.9197 -2.2209
18 1 2.6399 -10.3474 -4.1700
19 6 1.5175 -2.0706 -1.2588
20 7 2.0194 -0.6918 -1.1993
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5142 -0.8898
23 1 -0.3634 0.5135 0.8902
24 1 3.1298 -0.7090 1.2578
25 1 1.6637 -0.2162 2.1400
26 1 0.4548 -2.1820 1.2674
27 1 1.9409 -2.6986 2.1023
28 1 0.5531 -4.2405 -0.4226
29 1 2.3965 -4.6861 -1.9425
30 1 3.3696 -5.1052 -0.5122
31 1 1.7555 -6.8993 0.0592
32 1 0.7829 -6.4795 -1.3712
33 1 1.0559 -10.1485 -1.5270
34 1 0.4275 -2.0609 -1.2529
35 1 1.8713 -2.5466 -2.1733
36 1 1.7761 -0.1820 -2.0353
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001246281419.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:29:03
Heat of formation + Delta-G solvation = -40.237783 kcal
Electronic energy + Delta-G solvation = -14346.633673 eV
Core-core repulsion = 12056.575906 eV
Total energy + Delta-G solvation = -2290.057767 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 212.158 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.40933 -37.11931 -35.05730 -32.91361 -32.32918 -29.92350 -27.67975 -25.81997
-24.45683 -22.74421 -22.48038 -19.74039 -18.54576 -17.68657 -16.58721 -16.26619
-15.98134 -15.67910 -15.06699 -14.70158 -14.49428 -14.21169 -13.95032 -13.62204
-13.22689 -13.08172 -12.91543 -12.86418 -12.44428 -12.17401 -11.93836 -11.75565
-11.47550 -11.37432 -11.27924 -11.06116 -10.57879 -9.42323 -9.24182 -8.21078
-6.32654 1.40083 1.40762 1.54225 2.40252 3.11283 3.12515 3.48947
3.89881 3.90529 4.05113 4.17069 4.32794 4.45255 4.51940 4.58572
4.63763 4.69441 4.76356 4.81310 5.01507 5.05608 5.07020 5.14256
5.23710 5.37311 5.43208 5.50456 5.67017 5.77519 5.99451 6.16981
6.31726 6.47908 6.55116 6.84600 7.36823 8.91402
Molecular weight = 212.16amu
Principal moments of inertia in cm(-1)
A = 0.067555 B = 0.005292 C = 0.005184
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 414.378388 B = 5289.990115 C = 5399.608527
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.081 3.919
3 H 0.097 0.903
4 C -0.108 4.108
5 C -0.105 4.105
6 C 0.090 3.910
7 H 0.064 0.936
8 N -0.689 5.689
9 C 0.087 3.913
10 C 0.032 3.968
11 C -0.544 4.544
12 H 0.059 0.941
13 C 0.001 3.999
14 N -0.932 5.932
15 Si 0.968 3.032
16 H -0.262 1.262
17 H -0.277 1.277
18 H -0.276 1.276
19 C 0.035 3.965
20 N -0.686 5.686
21 H 0.049 0.951
22 H 0.057 0.943
23 H 0.072 0.928
24 H 0.063 0.937
25 H 0.086 0.914
26 H 0.063 0.937
27 H 0.059 0.941
28 H 0.337 0.663
29 H 0.019 0.981
30 H 0.053 0.947
31 H -0.006 1.006
32 H -0.008 1.008
33 H 0.264 0.736
34 H 0.039 0.961
35 H 0.057 0.943
36 H 0.349 0.651
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.652 18.865 2.232 19.008
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.244 4.244
2 C -0.029 4.029
3 H 0.115 0.885
4 C -0.146 4.146
5 C -0.143 4.143
6 C -0.020 4.020
7 H 0.083 0.917
8 N -0.319 5.319
9 C -0.042 4.042
10 C -0.006 4.006
11 C -0.583 4.583
12 H 0.077 0.923
13 C -0.197 4.197
14 N -0.572 5.572
15 Si 0.792 3.208
16 H -0.186 1.186
17 H -0.203 1.203
18 H -0.202 1.202
19 C -0.096 4.096
20 N -0.317 5.317
21 H 0.068 0.932
22 H 0.076 0.924
23 H 0.091 0.909
24 H 0.081 0.919
25 H 0.104 0.896
26 H 0.081 0.919
27 H 0.077 0.923
28 H 0.155 0.845
29 H 0.037 0.963
30 H 0.072 0.928
31 H 0.012 0.988
32 H 0.010 0.990
33 H 0.073 0.927
34 H 0.057 0.943
35 H 0.075 0.925
36 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 0.169 18.342 3.131 18.608
hybrid contribution -0.901 -0.586 -1.632 1.954
sum -0.732 17.756 1.499 17.834
Atomic orbital electron populations
1.22531 0.97230 1.01897 1.02788 1.21651 0.92919 0.98104 0.90181
0.88483 1.21592 1.01056 0.94355 0.97582 1.21545 1.00776 0.95510
0.96452 1.21603 0.99059 0.86504 0.94821 0.91742 1.60679 1.05879
1.09058 1.56283 1.21776 0.96094 0.93035 0.93329 1.18928 0.94913
0.91504 0.95246 1.21638 1.10761 0.95436 1.30459 0.92262 1.25973
0.96702 0.99732 0.97263 1.70110 1.27334 1.14538 1.45233 0.85363
0.78773 0.78369 0.78312 1.18627 1.20288 1.20200 1.22540 0.97644
0.90508 0.98907 1.60426 1.63272 1.02157 1.05887 0.93215 0.92379
0.90889 0.91863 0.89589 0.91860 0.92265 0.84542 0.96314 0.92817
0.98778 0.98972 0.92704 0.94278 0.92473 0.83243
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.06 8.59 71.98 0.62 -2.44 16
2 C 0.08 1.45 3.68 44.94 0.17 1.61 16
3 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16
4 C -0.11 -2.10 5.61 30.64 0.17 -1.93 16
5 C -0.10 -2.62 5.30 30.67 0.16 -2.45 16
6 C 0.09 2.71 2.63 44.97 0.12 2.83 16
7 H 0.06 2.14 7.80 -2.39 -0.02 2.12 16
8 N -0.69 -25.34 6.25 -491.27 -3.07 -28.41 16
9 C 0.09 3.79 5.42 86.30 0.47 4.26 16
10 C 0.03 1.73 5.23 29.85 0.16 1.89 16
11 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16
12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16
13 C 0.00 0.07 5.46 84.65 0.46 0.53 16
14 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16
15 Si 0.97 44.87 29.54 68.60 2.03 46.90 16
16 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16
17 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16
18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16
19 C 0.04 0.92 5.51 86.32 0.48 1.40 16
20 N -0.69 -14.74 6.65 -491.69 -3.27 -18.01 16
21 H 0.05 0.99 4.80 -2.39 -0.01 0.97 16
22 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
23 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16
24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16
25 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16
26 H 0.06 1.54 6.56 -2.39 -0.02 1.53 16
27 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16
28 H 0.34 12.01 8.47 -89.69 -0.76 11.25 16
29 H 0.02 0.80 7.45 -2.38 -0.02 0.78 16
30 H 0.05 2.39 8.06 -2.39 -0.02 2.37 16
31 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16
32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16
33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16
34 H 0.04 0.99 6.17 -2.39 -0.01 0.97 16
35 H 0.06 1.66 7.48 -2.39 -0.02 1.64 16
36 H 0.35 6.28 8.90 -89.69 -0.80 5.48 16
Total: -1.00 -64.22 280.45 -1.50 -65.72
By element:
Atomic # 1 Polarization: 17.56 SS G_CDS: -0.50 Total: 17.06 kcal
Atomic # 6 Polarization: -28.91 SS G_CDS: 3.03 Total: -25.87 kcal
Atomic # 7 Polarization: -97.74 SS G_CDS: -6.06 Total: -103.80 kcal
Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal
Total: -64.22 -1.50 -65.72 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001246281419.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.480 kcal
(2) G-P(sol) polarization free energy of solvation -64.218 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.739 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.499 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.718 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.238 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds