Wall clock time and date at job start Sun Mar 29 2020 21:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46577 * 2 1 4 4 C 1.53036 * 109.46207 * 119.96660 * 2 1 3 5 5 C 1.53115 * 109.27765 * 60.83760 * 4 2 1 6 6 C 1.53123 * 109.16049 * 57.65618 * 5 4 2 7 7 H 1.09002 * 109.53602 * 62.31024 * 6 5 4 8 8 N 1.46901 * 109.49989 * 182.40375 * 6 5 4 9 9 C 1.46906 * 110.99754 * 204.80049 * 8 6 5 10 10 C 1.53002 * 109.46973 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.46757 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00392 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99720 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00384 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99883 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47073 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46965 * 119.99728 * 15 13 11 18 18 H 1.48498 * 109.47469 * 239.99869 * 15 13 11 19 19 C 1.53030 * 109.27647 * 302.34438 * 6 5 4 20 20 N 1.46845 * 109.46811 * 240.02087 * 2 1 3 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 59.97975 * 1 2 3 23 23 H 1.09004 * 109.47261 * 299.97956 * 1 2 3 24 24 H 1.09001 * 109.50549 * 180.78114 * 4 2 1 25 25 H 1.09006 * 109.50742 * 300.89677 * 4 2 1 26 26 H 1.09000 * 109.52666 * 297.74978 * 5 4 2 27 27 H 1.09007 * 109.52246 * 177.55915 * 5 4 2 28 28 H 1.00903 * 111.00154 * 80.85182 * 8 6 5 29 29 H 1.09005 * 109.47214 * 300.00200 * 9 8 6 30 30 H 1.09001 * 109.47105 * 60.00010 * 9 8 6 31 31 H 1.08993 * 109.47317 * 299.99700 * 10 9 8 32 32 H 1.08993 * 109.47014 * 60.00369 * 10 9 8 33 33 H 0.96996 * 120.00204 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.46253 * 299.16255 * 19 6 5 35 35 H 1.08999 * 109.46763 * 179.19744 * 19 6 5 36 36 H 1.00903 * 110.99572 * 65.81883 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 1.2500 5 6 1.5443 -2.1694 1.2358 6 6 2.0270 -2.8531 -0.0464 7 1 3.1167 -2.8757 -0.0595 8 7 1.5075 -4.2263 -0.0953 9 6 2.3622 -5.0832 -0.9280 10 6 1.7900 -6.5019 -0.9552 11 6 2.6673 -7.3810 -1.8088 12 1 3.5449 -6.9690 -2.2847 13 6 2.3489 -8.7112 -1.9831 14 7 1.2800 -9.2129 -1.4041 15 14 3.4359 -9.8007 -3.0418 16 1 4.5679 -9.0014 -3.5756 17 1 3.9644 -10.9197 -2.2209 18 1 2.6399 -10.3474 -4.1700 19 6 1.5175 -2.0706 -1.2588 20 7 2.0194 -0.6918 -1.1993 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5142 -0.8898 23 1 -0.3634 0.5135 0.8902 24 1 3.1298 -0.7090 1.2578 25 1 1.6637 -0.2162 2.1400 26 1 0.4548 -2.1820 1.2674 27 1 1.9409 -2.6986 2.1023 28 1 0.5531 -4.2405 -0.4226 29 1 2.3965 -4.6861 -1.9425 30 1 3.3696 -5.1052 -0.5122 31 1 1.7555 -6.8993 0.0592 32 1 0.7829 -6.4795 -1.3712 33 1 1.0559 -10.1485 -1.5270 34 1 0.4275 -2.0609 -1.2529 35 1 1.8713 -2.5466 -2.1733 36 1 1.7761 -0.1820 -2.0353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246281419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:03 Heat of formation + Delta-G solvation = -40.237783 kcal Electronic energy + Delta-G solvation = -14346.633673 eV Core-core repulsion = 12056.575906 eV Total energy + Delta-G solvation = -2290.057767 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40933 -37.11931 -35.05730 -32.91361 -32.32918 -29.92350 -27.67975 -25.81997 -24.45683 -22.74421 -22.48038 -19.74039 -18.54576 -17.68657 -16.58721 -16.26619 -15.98134 -15.67910 -15.06699 -14.70158 -14.49428 -14.21169 -13.95032 -13.62204 -13.22689 -13.08172 -12.91543 -12.86418 -12.44428 -12.17401 -11.93836 -11.75565 -11.47550 -11.37432 -11.27924 -11.06116 -10.57879 -9.42323 -9.24182 -8.21078 -6.32654 1.40083 1.40762 1.54225 2.40252 3.11283 3.12515 3.48947 3.89881 3.90529 4.05113 4.17069 4.32794 4.45255 4.51940 4.58572 4.63763 4.69441 4.76356 4.81310 5.01507 5.05608 5.07020 5.14256 5.23710 5.37311 5.43208 5.50456 5.67017 5.77519 5.99451 6.16981 6.31726 6.47908 6.55116 6.84600 7.36823 8.91402 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067555 B = 0.005292 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.378388 B = 5289.990115 C = 5399.608527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.081 3.919 3 H 0.097 0.903 4 C -0.108 4.108 5 C -0.105 4.105 6 C 0.090 3.910 7 H 0.064 0.936 8 N -0.689 5.689 9 C 0.087 3.913 10 C 0.032 3.968 11 C -0.544 4.544 12 H 0.059 0.941 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.276 1.276 19 C 0.035 3.965 20 N -0.686 5.686 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.337 0.663 29 H 0.019 0.981 30 H 0.053 0.947 31 H -0.006 1.006 32 H -0.008 1.008 33 H 0.264 0.736 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.652 18.865 2.232 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.029 4.029 3 H 0.115 0.885 4 C -0.146 4.146 5 C -0.143 4.143 6 C -0.020 4.020 7 H 0.083 0.917 8 N -0.319 5.319 9 C -0.042 4.042 10 C -0.006 4.006 11 C -0.583 4.583 12 H 0.077 0.923 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.096 4.096 20 N -0.317 5.317 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.155 0.845 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.012 0.988 32 H 0.010 0.990 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.169 18.342 3.131 18.608 hybrid contribution -0.901 -0.586 -1.632 1.954 sum -0.732 17.756 1.499 17.834 Atomic orbital electron populations 1.22531 0.97230 1.01897 1.02788 1.21651 0.92919 0.98104 0.90181 0.88483 1.21592 1.01056 0.94355 0.97582 1.21545 1.00776 0.95510 0.96452 1.21603 0.99059 0.86504 0.94821 0.91742 1.60679 1.05879 1.09058 1.56283 1.21776 0.96094 0.93035 0.93329 1.18928 0.94913 0.91504 0.95246 1.21638 1.10761 0.95436 1.30459 0.92262 1.25973 0.96702 0.99732 0.97263 1.70110 1.27334 1.14538 1.45233 0.85363 0.78773 0.78369 0.78312 1.18627 1.20288 1.20200 1.22540 0.97644 0.90508 0.98907 1.60426 1.63272 1.02157 1.05887 0.93215 0.92379 0.90889 0.91863 0.89589 0.91860 0.92265 0.84542 0.96314 0.92817 0.98778 0.98972 0.92704 0.94278 0.92473 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 8.59 71.98 0.62 -2.44 16 2 C 0.08 1.45 3.68 44.94 0.17 1.61 16 3 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.11 -2.10 5.61 30.64 0.17 -1.93 16 5 C -0.10 -2.62 5.30 30.67 0.16 -2.45 16 6 C 0.09 2.71 2.63 44.97 0.12 2.83 16 7 H 0.06 2.14 7.80 -2.39 -0.02 2.12 16 8 N -0.69 -25.34 6.25 -491.27 -3.07 -28.41 16 9 C 0.09 3.79 5.42 86.30 0.47 4.26 16 10 C 0.03 1.73 5.23 29.85 0.16 1.89 16 11 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 13 C 0.00 0.07 5.46 84.65 0.46 0.53 16 14 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 15 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 16 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 C 0.04 0.92 5.51 86.32 0.48 1.40 16 20 N -0.69 -14.74 6.65 -491.69 -3.27 -18.01 16 21 H 0.05 0.99 4.80 -2.39 -0.01 0.97 16 22 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.06 1.54 6.56 -2.39 -0.02 1.53 16 27 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.34 12.01 8.47 -89.69 -0.76 11.25 16 29 H 0.02 0.80 7.45 -2.38 -0.02 0.78 16 30 H 0.05 2.39 8.06 -2.39 -0.02 2.37 16 31 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.04 0.99 6.17 -2.39 -0.01 0.97 16 35 H 0.06 1.66 7.48 -2.39 -0.02 1.64 16 36 H 0.35 6.28 8.90 -89.69 -0.80 5.48 16 Total: -1.00 -64.22 280.45 -1.50 -65.72 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -0.50 Total: 17.06 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 3.03 Total: -25.87 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -6.06 Total: -103.80 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.22 -1.50 -65.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246281419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.480 kcal (2) G-P(sol) polarization free energy of solvation -64.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds