Wall clock time and date at job start Sun Mar 29 2020 21:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.45198 * 2 1 4 4 C 1.53044 * 109.46021 * 240.02969 * 2 1 3 5 5 C 1.53121 * 109.27467 * 299.16145 * 4 2 1 6 6 C 1.53118 * 109.15998 * 302.34543 * 5 4 2 7 7 H 1.09001 * 109.53661 * 297.69725 * 6 5 4 8 8 N 1.46898 * 109.50421 * 177.60011 * 6 5 4 9 9 C 1.46901 * 111.00258 * 155.19743 * 8 6 5 10 10 C 1.53003 * 109.46887 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.47012 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99855 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00051 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99597 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99790 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47180 * 90.00012 * 15 13 11 17 17 H 1.48502 * 109.46643 * 209.99455 * 15 13 11 18 18 H 1.48498 * 109.47302 * 329.99390 * 15 13 11 19 19 C 1.53034 * 109.28068 * 57.65604 * 6 5 4 20 20 N 1.46847 * 109.46628 * 119.97340 * 2 1 3 21 21 H 1.09005 * 109.46766 * 300.02352 * 1 2 3 22 22 H 1.08998 * 109.47247 * 60.02244 * 1 2 3 23 23 H 1.08997 * 109.47067 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.50067 * 179.21960 * 4 2 1 25 25 H 1.08993 * 109.50192 * 59.10028 * 4 2 1 26 26 H 1.09004 * 109.51709 * 182.44592 * 5 4 2 27 27 H 1.08992 * 109.52559 * 62.25309 * 5 4 2 28 28 H 1.00900 * 110.99959 * 279.15127 * 8 6 5 29 29 H 1.09004 * 109.46937 * 299.99648 * 9 8 6 30 30 H 1.09000 * 109.46781 * 59.99927 * 9 8 6 31 31 H 1.08999 * 109.47558 * 300.00042 * 10 9 8 32 32 H 1.09004 * 109.47234 * 59.99945 * 10 9 8 33 33 H 0.97009 * 119.99565 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.46341 * 180.80474 * 19 6 5 35 35 H 1.09003 * 109.45147 * 60.83100 * 19 6 5 36 36 H 1.00901 * 110.99839 * 294.17904 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 1.5442 -2.1695 -1.2356 6 6 2.0269 -2.8531 0.0466 7 1 3.1166 -2.8756 0.0597 8 7 1.5075 -4.2263 0.0958 9 6 2.3623 -5.0831 0.9284 10 6 1.7900 -6.5018 0.9558 11 6 2.6673 -7.3809 1.8095 12 1 3.5449 -6.9688 2.2853 13 6 2.3489 -8.7110 1.9840 14 7 3.1142 -9.4779 2.7294 15 14 0.8306 -9.4236 1.1615 16 1 1.1929 -9.9430 -0.1816 17 1 0.2917 -10.5308 1.9916 18 1 -0.1998 -8.3635 1.0210 19 6 1.5175 -2.0705 1.2590 20 7 2.0194 -0.6917 1.1994 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5135 -0.8902 23 1 -0.3633 -1.0276 0.0005 24 1 3.1297 -0.7091 -1.2577 25 1 1.6636 -0.2163 -2.1399 26 1 1.9409 -2.6988 -2.1021 27 1 0.4548 -2.1822 -1.2672 28 1 0.5531 -4.2404 0.4230 29 1 3.3696 -5.1051 0.5126 30 1 2.3965 -4.6858 1.9429 31 1 0.7828 -6.4794 1.3718 32 1 1.7554 -6.8992 -0.0586 33 1 2.8904 -10.4139 2.8518 34 1 1.8714 -2.5465 2.1735 35 1 0.4275 -2.0608 1.2530 36 1 1.7761 -0.1818 2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246281420.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:05 Heat of formation + Delta-G solvation = -14.945829 kcal Electronic energy + Delta-G solvation = -14390.634932 eV Core-core repulsion = 12101.673906 eV Total energy + Delta-G solvation = -2288.961025 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.42497 -35.74425 -33.01172 -31.90388 -31.04741 -28.78784 -26.65760 -23.96031 -23.41128 -21.59581 -20.47102 -18.73246 -16.90051 -16.64933 -15.09977 -14.91478 -14.68495 -14.16815 -13.82704 -13.56896 -13.21073 -13.00662 -12.59007 -12.46201 -12.19108 -12.12335 -11.38025 -11.13128 -11.01362 -10.73560 -10.50964 -10.42889 -10.13399 -9.77903 -9.61456 -9.20491 -8.52668 -8.50191 -7.90308 -6.02504 -4.00674 3.34170 3.40761 3.45528 4.07195 4.47880 4.57616 4.80890 4.91881 4.97453 5.05983 5.23059 5.32101 5.37060 5.48624 5.53900 5.70317 5.74809 5.80581 5.94941 6.00800 6.06440 6.25388 6.26240 6.41077 6.45268 6.80679 6.89717 7.19850 7.28819 7.41161 7.64799 7.78403 7.93410 8.55561 9.01963 9.60015 11.10921 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.060032 B = 0.005717 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.308978 B = 4896.335600 C = 5027.308584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.082 3.918 3 H 0.078 0.922 4 C -0.111 4.111 5 C -0.109 4.109 6 C 0.090 3.910 7 H 0.082 0.918 8 N -0.687 5.687 9 C 0.074 3.926 10 C -0.010 4.010 11 C -0.521 4.521 12 H 0.071 0.929 13 C 0.067 3.933 14 N -0.904 5.904 15 Si 0.883 3.117 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.266 1.266 19 C 0.026 3.974 20 N -0.680 5.680 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.333 0.667 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.012 0.988 32 H 0.020 0.980 33 H 0.263 0.737 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.695 18.471 -6.005 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.028 4.028 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.147 4.147 6 C -0.021 4.021 7 H 0.100 0.900 8 N -0.317 5.317 9 C -0.054 4.054 10 C -0.048 4.048 11 C -0.559 4.559 12 H 0.089 0.911 13 C -0.134 4.134 14 N -0.543 5.543 15 Si 0.710 3.290 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.105 4.105 20 N -0.311 5.311 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.150 0.850 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.030 0.970 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.756 17.894 -6.811 19.729 hybrid contribution -1.955 -0.044 0.892 2.150 sum -6.712 17.850 -5.919 19.968 Atomic orbital electron populations 1.22585 0.97984 1.02581 1.01729 1.21561 0.92332 0.97604 0.91329 0.90358 1.21589 1.01455 0.95772 0.96155 1.21590 1.00572 0.94338 0.98248 1.21567 1.00165 0.87598 0.92737 0.89982 1.60762 1.06064 1.07729 1.57133 1.21989 0.96427 0.93834 0.93197 1.19556 0.96353 0.91739 0.97175 1.21084 1.11074 0.94046 1.29711 0.91097 1.25008 0.96585 0.97001 0.94836 1.69921 1.38531 1.06522 1.39368 0.86731 0.83928 0.78764 0.79556 1.20231 1.21527 1.19046 1.22775 0.97465 0.89594 1.00679 1.60453 1.63049 1.02898 1.04656 0.93135 0.92203 0.91697 0.91206 0.91729 0.91255 0.92257 0.85015 0.91697 0.95956 0.96964 0.96125 0.92751 0.90849 0.94813 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 8.59 37.16 0.32 -1.41 16 2 C 0.08 0.81 3.68 -67.72 -0.25 0.56 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -1.16 5.61 -26.65 -0.15 -1.31 16 5 C -0.11 -1.35 5.30 -26.61 -0.14 -1.49 16 6 C 0.09 1.30 2.63 -67.64 -0.18 1.12 16 7 H 0.08 1.31 7.80 -51.93 -0.41 0.91 16 8 N -0.69 -11.71 6.25 -106.64 -0.67 -12.38 16 9 C 0.07 1.51 5.42 -3.82 -0.02 1.49 16 10 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 11 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 12 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 15 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 19 C 0.03 0.33 5.51 -3.83 -0.02 0.31 16 20 N -0.68 -7.69 6.65 -106.76 -0.71 -8.40 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.67 4.80 -51.93 -0.25 0.42 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.72 6.56 -51.93 -0.34 0.37 16 28 H 0.33 5.39 8.46 -39.29 -0.33 5.05 16 29 H 0.06 1.38 8.06 -51.93 -0.42 0.96 16 30 H 0.02 0.46 7.45 -51.93 -0.39 0.07 16 31 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 32 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.07 1.05 7.48 -51.93 -0.39 0.66 16 35 H 0.03 0.42 6.17 -51.93 -0.32 0.10 16 36 H 0.34 3.30 8.90 -39.29 -0.35 2.95 16 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -30.40 276.85 -8.17 -38.57 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.08 Total: 2.72 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.99 Total: -14.67 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.60 Total: -48.28 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.40 -8.17 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246281420.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.626 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds