Wall clock time and date at job start Sun Mar 29 2020 21:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.45198 * 2 1 4 4 C 1.53044 * 109.46021 * 240.02969 * 2 1 3 5 5 C 1.53121 * 109.27467 * 299.16145 * 4 2 1 6 6 C 1.53118 * 109.15998 * 302.34543 * 5 4 2 7 7 H 1.09001 * 109.53661 * 297.69725 * 6 5 4 8 8 N 1.46898 * 109.50421 * 177.60011 * 6 5 4 9 9 C 1.46901 * 111.00258 * 155.19743 * 8 6 5 10 10 C 1.53003 * 109.46887 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.47012 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99855 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00051 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99597 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99790 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47180 * 90.00012 * 15 13 11 17 17 H 1.48502 * 109.46643 * 209.99455 * 15 13 11 18 18 H 1.48498 * 109.47302 * 329.99390 * 15 13 11 19 19 C 1.53034 * 109.28068 * 57.65604 * 6 5 4 20 20 N 1.46847 * 109.46628 * 119.97340 * 2 1 3 21 21 H 1.09005 * 109.46766 * 300.02352 * 1 2 3 22 22 H 1.08998 * 109.47247 * 60.02244 * 1 2 3 23 23 H 1.08997 * 109.47067 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.50067 * 179.21960 * 4 2 1 25 25 H 1.08993 * 109.50192 * 59.10028 * 4 2 1 26 26 H 1.09004 * 109.51709 * 182.44592 * 5 4 2 27 27 H 1.08992 * 109.52559 * 62.25309 * 5 4 2 28 28 H 1.00900 * 110.99959 * 279.15127 * 8 6 5 29 29 H 1.09004 * 109.46937 * 299.99648 * 9 8 6 30 30 H 1.09000 * 109.46781 * 59.99927 * 9 8 6 31 31 H 1.08999 * 109.47558 * 300.00042 * 10 9 8 32 32 H 1.09004 * 109.47234 * 59.99945 * 10 9 8 33 33 H 0.97009 * 119.99565 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.46341 * 180.80474 * 19 6 5 35 35 H 1.09003 * 109.45147 * 60.83100 * 19 6 5 36 36 H 1.00901 * 110.99839 * 294.17904 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 1.5442 -2.1695 -1.2356 6 6 2.0269 -2.8531 0.0466 7 1 3.1166 -2.8756 0.0597 8 7 1.5075 -4.2263 0.0958 9 6 2.3623 -5.0831 0.9284 10 6 1.7900 -6.5018 0.9558 11 6 2.6673 -7.3809 1.8095 12 1 3.5449 -6.9688 2.2853 13 6 2.3489 -8.7110 1.9840 14 7 3.1142 -9.4779 2.7294 15 14 0.8306 -9.4236 1.1615 16 1 1.1929 -9.9430 -0.1816 17 1 0.2917 -10.5308 1.9916 18 1 -0.1998 -8.3635 1.0210 19 6 1.5175 -2.0705 1.2590 20 7 2.0194 -0.6917 1.1994 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5135 -0.8902 23 1 -0.3633 -1.0276 0.0005 24 1 3.1297 -0.7091 -1.2577 25 1 1.6636 -0.2163 -2.1399 26 1 1.9409 -2.6988 -2.1021 27 1 0.4548 -2.1822 -1.2672 28 1 0.5531 -4.2404 0.4230 29 1 3.3696 -5.1051 0.5126 30 1 2.3965 -4.6858 1.9429 31 1 0.7828 -6.4794 1.3718 32 1 1.7554 -6.8992 -0.0586 33 1 2.8904 -10.4139 2.8518 34 1 1.8714 -2.5465 2.1735 35 1 0.4275 -2.0608 1.2530 36 1 1.7761 -0.1818 2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246281420.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:05 Heat of formation + Delta-G solvation = -37.933328 kcal Electronic energy + Delta-G solvation = -14391.631745 eV Core-core repulsion = 12101.673906 eV Total energy + Delta-G solvation = -2289.957838 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.41791 -37.16746 -35.01363 -33.00040 -32.53415 -30.18868 -27.74562 -25.67746 -24.43703 -22.70840 -22.33070 -19.73736 -18.97667 -17.71755 -16.43416 -16.35142 -15.91275 -15.66968 -15.24250 -14.64979 -14.55282 -14.46980 -14.05176 -13.67918 -13.33859 -13.11535 -12.92118 -12.89831 -12.19313 -12.07189 -11.94214 -11.72500 -11.47945 -11.42485 -11.28799 -11.19859 -10.77790 -9.43372 -9.27156 -8.30519 -6.35420 1.37328 1.38519 1.51225 2.36466 3.05033 3.08349 3.46404 3.88960 3.90396 4.04655 4.16597 4.32344 4.39978 4.51001 4.53466 4.63203 4.68810 4.76220 4.79417 4.95435 5.00113 5.07251 5.14131 5.22683 5.27929 5.38431 5.46481 5.52888 5.62616 5.97208 6.21432 6.26592 6.47072 6.54084 6.73313 7.29570 8.86359 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.060032 B = 0.005717 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.308978 B = 4896.335600 C = 5027.308584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 H 0.095 0.905 4 C -0.109 4.109 5 C -0.103 4.103 6 C 0.090 3.910 7 H 0.061 0.939 8 N -0.685 5.685 9 C 0.089 3.911 10 C -0.004 4.004 11 C -0.536 4.536 12 H 0.030 0.970 13 C 0.005 3.995 14 N -0.951 5.951 15 Si 0.956 3.044 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.246 1.246 19 C 0.034 3.966 20 N -0.688 5.688 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.341 0.659 29 H 0.051 0.949 30 H 0.016 0.984 31 H 0.021 0.979 32 H 0.021 0.979 33 H 0.267 0.733 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.768 19.893 -7.340 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.029 4.029 3 H 0.113 0.887 4 C -0.147 4.147 5 C -0.142 4.142 6 C -0.021 4.021 7 H 0.080 0.920 8 N -0.315 5.315 9 C -0.040 4.040 10 C -0.041 4.041 11 C -0.574 4.574 12 H 0.048 0.952 13 C -0.191 4.191 14 N -0.592 5.592 15 Si 0.779 3.221 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.170 1.170 19 C -0.097 4.097 20 N -0.320 5.320 21 H 0.075 0.925 22 H 0.091 0.909 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.159 0.841 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.832 19.356 -8.150 22.085 hybrid contribution -1.211 -0.425 1.344 1.858 sum -8.043 18.931 -6.806 21.666 Atomic orbital electron populations 1.22523 0.97067 1.02016 1.02763 1.21652 0.93038 0.98032 0.90171 0.88723 1.21595 1.00969 0.94579 0.97540 1.21536 1.00944 0.95320 0.96357 1.21599 0.99022 0.86567 0.94890 0.92015 1.60684 1.05964 1.08967 1.55913 1.21629 0.96176 0.92735 0.93488 1.19438 0.95804 0.92947 0.95960 1.21416 1.10652 0.95157 1.30181 0.95164 1.26015 1.00303 0.97381 0.95442 1.70072 1.40872 1.07136 1.41111 0.85575 0.79671 0.78342 0.78508 1.19260 1.20862 1.16962 1.22553 0.97806 0.90449 0.98877 1.60411 1.63421 1.02269 1.05909 0.92473 0.90880 0.92956 0.92090 0.89543 0.92049 0.91492 0.84129 0.93056 0.96548 0.96108 0.96029 0.92403 0.92666 0.93903 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.59 71.98 0.62 -2.17 16 2 C 0.08 1.37 3.68 44.94 0.17 1.53 16 3 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.11 -2.00 5.61 30.65 0.17 -1.82 16 5 C -0.10 -2.36 5.30 30.67 0.16 -2.20 16 6 C 0.09 2.52 2.63 44.97 0.12 2.63 16 7 H 0.06 1.99 7.80 -2.39 -0.02 1.97 16 8 N -0.69 -22.69 6.25 -491.30 -3.07 -25.76 16 9 C 0.09 3.67 5.42 86.30 0.47 4.14 16 10 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 11 C -0.54 -31.81 9.66 25.60 0.25 -31.57 16 12 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 13 C 0.01 0.32 5.47 84.65 0.46 0.79 16 14 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 15 Si 0.96 45.16 27.47 68.60 1.88 47.05 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 19 C 0.03 0.85 5.51 86.32 0.48 1.33 16 20 N -0.69 -14.38 6.65 -491.67 -3.27 -17.65 16 21 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 22 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.05 0.93 4.80 -2.39 -0.01 0.92 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.44 6.56 -2.39 -0.02 1.43 16 28 H 0.34 10.44 8.46 -89.69 -0.76 9.68 16 29 H 0.05 2.24 8.06 -2.38 -0.02 2.22 16 30 H 0.02 0.69 7.45 -2.39 -0.02 0.67 16 31 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 32 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 33 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 34 H 0.05 1.56 7.48 -2.39 -0.02 1.54 16 35 H 0.04 0.99 6.17 -2.39 -0.01 0.98 16 36 H 0.35 6.14 8.90 -89.69 -0.80 5.34 16 Total: -1.00 -65.77 276.85 -1.69 -67.46 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -0.55 Total: 16.74 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 3.02 Total: -27.39 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -6.04 Total: -103.85 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -65.77 -1.69 -67.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246281420.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.529 kcal (2) G-P(sol) polarization free energy of solvation -65.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds