Wall clock time and date at job start Sun Mar 29 2020 21:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47364 * 2 1 4 4 C 1.50696 * 109.47107 * 120.00229 * 2 1 3 5 5 H 1.08000 * 120.00021 * 120.27523 * 4 2 1 6 6 C 1.37872 * 119.99816 * 299.99523 * 4 2 1 7 7 N 1.31512 * 120.00435 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99826 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47051 * 90.00612 * 8 6 4 10 10 H 1.48504 * 109.46923 * 210.00321 * 8 6 4 11 11 H 1.48500 * 109.47336 * 330.00220 * 8 6 4 12 12 N 1.46905 * 109.47289 * 240.00297 * 2 1 3 13 13 C 1.46894 * 111.00201 * 86.12744 * 12 2 1 14 14 H 1.09006 * 109.50618 * 326.16055 * 13 12 2 15 15 C 1.53120 * 109.50271 * 86.27960 * 13 12 2 16 16 C 1.53118 * 109.16220 * 177.59889 * 15 13 12 17 17 C 1.53040 * 109.27321 * 302.34207 * 16 15 13 18 18 H 1.09011 * 109.45669 * 179.19740 * 17 16 15 19 19 C 1.52998 * 109.46427 * 299.16455 * 17 16 15 20 20 N 1.46845 * 109.52390 * 59.18732 * 17 16 15 21 21 C 1.46848 * 111.19376 * 298.25072 * 20 17 16 22 22 H 1.08996 * 109.47004 * 305.69200 * 1 2 3 23 23 H 1.09000 * 109.47049 * 65.69126 * 1 2 3 24 24 H 1.09003 * 109.47253 * 185.68906 * 1 2 3 25 25 H 0.97003 * 120.00338 * 179.97438 * 7 6 4 26 26 H 1.00895 * 110.99895 * 210.08887 * 12 2 1 27 27 H 1.09005 * 109.52160 * 297.50021 * 15 13 12 28 28 H 1.08999 * 109.52538 * 57.69143 * 15 13 12 29 29 H 1.09002 * 109.50342 * 182.40688 * 16 15 13 30 30 H 1.08991 * 109.50807 * 62.28309 * 16 15 13 31 31 H 1.08998 * 109.47169 * 180.02562 * 19 17 16 32 32 H 1.09007 * 109.46983 * 300.05285 * 19 17 16 33 33 H 1.08988 * 109.47201 * 60.05527 * 19 17 16 34 34 H 1.00901 * 110.99665 * 174.16065 * 20 17 16 35 35 H 1.08998 * 109.46341 * 301.73058 * 21 20 17 36 36 H 1.08992 * 109.45456 * 181.75419 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6569 -1.5859 1.1313 6 6 1.6993 -0.2394 2.4826 7 7 0.9429 0.8297 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.6296 -0.5460 4.4123 10 1 1.3431 -0.9493 5.1119 11 1 2.4858 -2.5663 3.7119 12 7 2.0197 -0.6924 -1.1995 13 6 2.1079 0.2289 -2.3402 14 1 1.3064 0.9650 -2.2763 15 6 3.4621 0.9431 -2.3169 16 6 3.5699 1.8562 -3.5413 17 6 3.3944 1.0207 -4.8115 18 1 3.4564 1.6702 -5.6848 19 6 4.4984 -0.0362 -4.8830 20 7 2.0839 0.3586 -4.7862 21 6 1.9748 -0.5593 -3.6452 22 1 -0.3633 0.5995 0.8346 23 1 -0.3633 0.4230 -0.9366 24 1 -0.3634 -1.0226 0.1019 25 1 0.7083 1.1609 3.4844 26 1 2.9086 -1.1360 -1.0233 27 1 3.5433 1.5406 -1.4087 28 1 4.2637 0.2050 -2.3412 29 1 4.5490 2.3350 -3.5531 30 1 2.7920 2.6183 -3.4966 31 1 4.3738 -0.6310 -5.7879 32 1 5.4712 0.4552 -4.9018 33 1 4.4364 -0.6860 -4.0102 34 1 1.9048 -0.1218 -5.6552 35 1 2.7679 -1.3048 -3.7017 36 1 1.0056 -1.0573 -3.6714 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246347519.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:14 Heat of formation + Delta-G solvation = -11.138777 kcal Electronic energy + Delta-G solvation = -14867.407963 eV Core-core repulsion = 12578.612024 eV Total energy + Delta-G solvation = -2288.795939 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.10060 -35.58586 -32.75587 -31.50787 -30.26357 -27.80970 -26.01794 -25.03679 -23.17576 -21.56639 -19.67867 -18.61872 -16.60373 -16.19621 -14.96260 -14.60332 -14.35946 -13.88772 -13.39913 -13.27161 -12.96343 -12.44147 -12.20573 -11.99491 -11.87736 -11.38142 -10.99125 -10.93863 -10.72795 -10.50449 -10.33537 -10.18640 -10.09924 -9.95016 -9.70379 -8.78612 -8.46699 -8.21818 -7.18877 -6.00484 -4.06370 3.30063 3.36856 3.40673 4.32926 4.44287 4.95238 5.06058 5.23642 5.30925 5.34805 5.48590 5.58647 5.61901 5.80568 5.93862 6.00141 6.05321 6.14553 6.24652 6.35816 6.38355 6.69493 6.75389 6.96708 7.18843 7.23762 7.32293 7.57376 7.59601 7.81508 7.94782 8.29106 8.44558 8.72393 9.05230 9.59399 11.06247 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051665 B = 0.007178 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.821928 B = 3899.669686 C = 4033.448429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.214 3.786 3 H 0.002 0.998 4 C -0.519 4.519 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.685 5.685 13 C 0.094 3.906 14 H 0.076 0.924 15 C -0.149 4.149 16 C -0.108 4.108 17 C 0.084 3.916 18 H 0.075 0.925 19 C -0.189 4.189 20 N -0.685 5.685 21 C 0.068 3.932 22 H 0.076 0.924 23 H 0.006 0.994 24 H 0.031 0.969 25 H 0.260 0.740 26 H 0.329 0.671 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.336 0.664 35 H 0.030 0.970 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 0.039 -12.381 13.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 H 0.020 0.980 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.315 5.315 13 C -0.018 4.018 14 H 0.095 0.905 15 C -0.188 4.188 16 C -0.146 4.146 17 C -0.026 4.026 18 H 0.093 0.907 19 C -0.248 4.248 20 N -0.315 5.315 21 C -0.062 4.062 22 H 0.094 0.906 23 H 0.025 0.975 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.146 0.854 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.048 0.952 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.780 0.429 -12.058 12.644 hybrid contribution 1.717 -0.641 0.852 2.021 sum 5.497 -0.212 -11.205 12.483 Atomic orbital electron populations 1.21701 0.97928 0.99943 0.98458 1.19076 0.92481 0.92388 0.85403 0.98022 1.21279 1.31321 1.12607 0.90586 0.92348 1.24912 0.95067 0.94987 0.98990 1.69914 1.36613 1.22909 1.23395 0.86551 0.78446 0.80083 0.82626 1.20820 1.21197 1.19883 1.60689 1.32556 1.31808 1.06480 1.21467 0.95589 0.93754 0.90955 0.90543 1.22359 0.99205 0.99309 0.97961 1.21534 1.01102 0.98019 0.93958 1.21521 0.87456 0.95186 0.98469 0.90694 1.22578 0.99903 1.00444 1.01861 1.60423 1.29993 1.35191 1.05924 1.21925 1.00847 0.93252 0.90139 0.90579 0.97515 0.94992 0.92971 0.85395 0.91640 0.92444 0.92281 0.91390 0.93258 0.92467 0.91556 0.84646 0.95193 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 9.12 37.16 0.34 -2.77 16 2 C 0.21 5.48 2.41 -68.86 -0.17 5.31 16 3 H 0.00 0.06 7.23 -51.93 -0.38 -0.32 16 4 C -0.52 -14.38 8.59 -34.44 -0.30 -14.67 16 5 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.71 11.38 55.43 0.63 -25.08 16 8 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.69 -14.75 6.06 -100.87 -0.61 -15.37 16 13 C 0.09 1.73 2.41 -67.63 -0.16 1.56 16 14 H 0.08 1.59 7.19 -51.93 -0.37 1.21 16 15 C -0.15 -2.49 4.94 -26.61 -0.13 -2.62 16 16 C -0.11 -1.50 5.61 -26.65 -0.15 -1.65 16 17 C 0.08 1.04 3.68 -67.72 -0.25 0.79 16 18 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 19 C -0.19 -2.15 8.59 37.16 0.32 -1.83 16 20 N -0.68 -9.20 6.65 -106.76 -0.71 -9.91 16 21 C 0.07 1.06 5.86 -3.83 -0.02 1.03 16 22 H 0.08 2.09 6.24 -51.93 -0.32 1.77 16 23 H 0.01 0.14 7.48 -51.93 -0.39 -0.25 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 26 H 0.33 6.96 7.89 -39.29 -0.31 6.65 16 27 H 0.06 1.23 7.57 -51.93 -0.39 0.84 16 28 H 0.06 0.92 6.51 -51.93 -0.34 0.58 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 33 H 0.07 0.85 4.80 -51.94 -0.25 0.61 16 34 H 0.34 3.78 8.90 -39.29 -0.35 3.43 16 35 H 0.03 0.45 6.19 -51.93 -0.32 0.13 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 274.37 15.07 4.13 4.13 Total: -1.00 -28.28 274.37 -8.11 -36.39 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.92 Total: 6.62 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -0.61 Total: -13.20 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.69 Total: -50.36 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.28 -8.11 -36.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246347519.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.249 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds