Wall clock time and date at job start Sun Mar 29 2020 21:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47311 * 2 1 4 4 C 1.50701 * 109.47077 * 120.00078 * 2 1 3 5 5 H 1.08001 * 119.99960 * 120.00114 * 4 2 1 6 6 C 1.37880 * 119.99717 * 299.99938 * 4 2 1 7 7 N 1.31505 * 120.00240 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99666 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47117 * 270.00200 * 8 6 4 10 10 H 1.48497 * 109.47129 * 30.00139 * 8 6 4 11 11 H 1.48506 * 109.46983 * 149.99884 * 8 6 4 12 12 N 1.46897 * 109.47303 * 239.99877 * 2 1 3 13 13 C 1.46901 * 111.00396 * 152.25384 * 12 2 1 14 14 H 1.09004 * 109.51937 * 34.36443 * 13 12 2 15 15 C 1.53117 * 109.52516 * 274.17855 * 13 12 2 16 16 C 1.53035 * 109.27907 * 182.43741 * 15 13 12 17 17 N 1.46842 * 109.52316 * 59.18056 * 16 15 13 18 18 C 1.46845 * 111.19618 * 298.25287 * 17 16 15 19 19 H 1.09000 * 109.47015 * 301.73080 * 18 17 16 20 20 C 1.53003 * 109.46375 * 181.75787 * 18 17 16 21 21 C 1.53045 * 109.52130 * 61.74823 * 18 17 16 22 22 H 1.09005 * 109.47344 * 61.40841 * 1 2 3 23 23 H 1.08999 * 109.47206 * 181.40482 * 1 2 3 24 24 H 1.08995 * 109.47089 * 301.41060 * 1 2 3 25 25 H 0.97000 * 120.00480 * 179.97438 * 7 6 4 26 26 H 1.00906 * 110.99965 * 28.29958 * 12 2 1 27 27 H 1.09000 * 109.50429 * 302.37753 * 15 13 12 28 28 H 1.08998 * 109.50518 * 62.49063 * 15 13 12 29 29 H 1.09002 * 109.46194 * 299.15979 * 16 15 13 30 30 H 1.09004 * 109.45276 * 179.18977 * 16 15 13 31 31 H 1.00899 * 111.00560 * 62.35807 * 17 16 15 32 32 H 1.09006 * 109.47356 * 299.95319 * 20 18 17 33 33 H 1.09000 * 109.46833 * 59.95016 * 20 18 17 34 34 H 1.09002 * 109.47344 * 179.97438 * 20 18 17 35 35 H 1.09001 * 109.49892 * 180.88155 * 21 18 17 36 36 H 1.08996 * 109.50160 * 60.76011 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3212 -1.1204 4.0079 9 1 1.3426 -2.1617 4.4118 10 1 3.6291 -1.7584 3.7122 11 1 2.4865 -0.1414 5.1123 12 7 2.0196 -0.6925 -1.1994 13 6 3.3395 -0.1855 -1.5981 14 1 3.9109 0.0814 -0.7091 15 6 3.1662 1.0496 -2.4864 16 6 4.5415 1.5369 -2.9481 17 7 5.2166 0.4667 -3.6933 18 6 5.4364 -0.7127 -2.8466 19 1 6.0318 -0.4307 -1.9782 20 6 6.1793 -1.7840 -3.6475 21 6 4.0878 -1.2673 -2.3819 22 1 -0.3634 0.4918 -0.9024 23 1 -0.3633 -1.0273 0.0252 24 1 -0.3633 0.5356 0.8770 25 1 0.7080 1.1608 3.4844 26 1 1.3582 -0.6145 -1.9574 27 1 2.5613 0.7909 -3.3554 28 1 2.6717 1.8388 -1.9200 29 1 5.1411 1.8085 -2.0792 30 1 4.4206 2.4077 -3.5925 31 1 4.6997 0.2236 -4.5250 32 1 5.5840 -2.0667 -4.5158 33 1 7.1399 -1.3892 -3.9786 34 1 6.3430 -2.6594 -3.0190 35 1 4.2519 -2.1333 -1.7407 36 1 3.4974 -1.5624 -3.2492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246353485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:10 Heat of formation + Delta-G solvation = -16.238358 kcal Electronic energy + Delta-G solvation = -14813.604524 eV Core-core repulsion = 12524.587450 eV Total energy + Delta-G solvation = -2289.017074 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.94559 -35.57368 -32.77335 -31.93808 -30.25741 -27.06891 -26.56782 -25.12778 -22.39584 -21.16092 -20.16585 -19.86842 -16.10266 -15.52924 -14.95191 -14.87944 -14.32020 -13.76605 -13.64406 -13.47609 -12.71873 -12.52922 -12.28342 -11.78405 -11.59902 -11.28897 -11.19435 -10.93072 -10.73461 -10.65801 -10.38522 -10.37720 -10.11525 -9.97399 -9.74979 -9.12300 -8.38274 -8.18405 -7.18886 -5.96539 -3.99887 3.32772 3.38904 3.43095 4.39908 4.45676 4.90364 5.17213 5.29504 5.32509 5.39069 5.51193 5.59561 5.74113 5.79053 5.89363 6.01488 6.10897 6.18732 6.26207 6.32922 6.41743 6.60716 6.70686 6.77895 6.97886 7.06462 7.23378 7.47255 7.54212 7.75028 7.93778 8.31887 8.39189 8.76551 9.07905 9.65284 11.09917 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035676 B = 0.008175 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.649851 B = 3424.395137 C = 3773.933152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.211 3.789 3 H 0.002 0.998 4 C -0.491 4.491 5 H 0.060 0.940 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.288 1.288 12 N -0.681 5.681 13 C 0.096 3.904 14 H 0.080 0.920 15 C -0.185 4.185 16 C 0.062 3.938 17 N -0.683 5.683 18 C 0.080 3.920 19 H 0.079 0.921 20 C -0.141 4.141 21 C -0.135 4.135 22 H 0.004 0.996 23 H 0.034 0.966 24 H 0.088 0.912 25 H 0.259 0.741 26 H 0.314 0.686 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.334 0.666 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 -0.936 -10.633 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.104 3.896 3 H 0.020 0.980 4 C -0.530 4.530 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.214 1.214 12 N -0.309 5.309 13 C -0.015 4.015 14 H 0.098 0.902 15 C -0.226 4.226 16 C -0.069 4.069 17 N -0.312 5.312 18 C -0.031 4.031 19 H 0.097 0.903 20 C -0.199 4.199 21 C -0.175 4.175 22 H 0.023 0.977 23 H 0.053 0.947 24 H 0.106 0.894 25 H 0.069 0.931 26 H 0.130 0.870 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.151 0.849 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.840 -1.103 -9.993 12.160 hybrid contribution -1.061 0.131 0.641 1.246 sum 5.780 -0.972 -9.352 11.037 Atomic orbital electron populations 1.21962 0.98489 0.99837 0.99865 1.19163 0.91323 0.92159 0.86942 0.97991 1.21198 1.30254 1.11925 0.89633 0.92141 1.24964 0.95477 0.95166 0.99032 1.69879 1.37465 1.23270 1.23268 0.86542 0.79236 0.79296 0.82585 1.20770 1.19974 1.21409 1.60770 1.02351 1.60288 1.07511 1.21477 0.92911 0.90766 0.96376 0.90181 1.23025 0.98470 1.00743 1.00332 1.21933 0.92974 0.93845 0.98104 1.60786 1.52294 1.09552 1.08540 1.21609 0.95756 0.89889 0.95827 0.90282 1.21774 1.00274 0.97969 0.99858 1.22274 0.95693 0.99555 0.99945 0.97741 0.94687 0.89382 0.93121 0.86985 0.92729 0.91543 0.90981 0.91388 0.84870 0.93065 0.92305 0.92193 0.91051 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.92 37.15 0.33 -3.18 16 2 C 0.21 5.35 2.41 -68.87 -0.17 5.18 16 3 H 0.00 0.07 7.20 -51.93 -0.37 -0.31 16 4 C -0.49 -13.77 8.64 -34.44 -0.30 -14.06 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.98 11.33 55.43 0.63 -25.35 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 N -0.68 -14.52 6.06 -100.83 -0.61 -15.13 16 13 C 0.10 1.77 2.33 -67.59 -0.16 1.62 16 14 H 0.08 1.73 7.73 -51.93 -0.40 1.32 16 15 C -0.18 -2.94 5.32 -26.65 -0.14 -3.08 16 16 C 0.06 0.85 6.55 -3.84 -0.03 0.83 16 17 N -0.68 -8.88 6.50 -106.76 -0.69 -9.57 16 18 C 0.08 1.08 3.03 -67.72 -0.21 0.87 16 19 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 20 C -0.14 -1.59 9.47 37.16 0.35 -1.24 16 21 C -0.13 -2.11 4.97 -26.65 -0.13 -2.24 16 22 H 0.00 0.08 8.10 -51.93 -0.42 -0.34 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.09 2.37 6.11 -51.93 -0.32 2.05 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.31 6.19 8.00 -39.29 -0.31 5.88 16 27 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 28 H 0.07 1.17 7.56 -51.93 -0.39 0.78 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.33 3.97 8.79 -39.29 -0.35 3.63 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 282.69 15.07 4.26 4.26 Total: -1.00 -28.32 282.69 -8.31 -36.63 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.34 Total: 6.30 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.54 Total: -13.89 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.68 Total: -50.06 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.32 -8.31 -36.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246353485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.390 kcal (2) G-P(sol) polarization free energy of solvation -28.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds