Wall clock time and date at job start Sun Mar 29 2020 21:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47311 * 2 1 4 4 C 1.50701 * 109.47077 * 120.00078 * 2 1 3 5 5 H 1.08001 * 119.99960 * 120.00114 * 4 2 1 6 6 C 1.37880 * 119.99717 * 299.99938 * 4 2 1 7 7 N 1.31505 * 120.00240 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99666 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47117 * 270.00200 * 8 6 4 10 10 H 1.48497 * 109.47129 * 30.00139 * 8 6 4 11 11 H 1.48506 * 109.46983 * 149.99884 * 8 6 4 12 12 N 1.46897 * 109.47303 * 239.99877 * 2 1 3 13 13 C 1.46901 * 111.00396 * 152.25384 * 12 2 1 14 14 H 1.09004 * 109.51937 * 34.36443 * 13 12 2 15 15 C 1.53117 * 109.52516 * 274.17855 * 13 12 2 16 16 C 1.53035 * 109.27907 * 182.43741 * 15 13 12 17 17 N 1.46842 * 109.52316 * 59.18056 * 16 15 13 18 18 C 1.46845 * 111.19618 * 298.25287 * 17 16 15 19 19 H 1.09000 * 109.47015 * 301.73080 * 18 17 16 20 20 C 1.53003 * 109.46375 * 181.75787 * 18 17 16 21 21 C 1.53045 * 109.52130 * 61.74823 * 18 17 16 22 22 H 1.09005 * 109.47344 * 61.40841 * 1 2 3 23 23 H 1.08999 * 109.47206 * 181.40482 * 1 2 3 24 24 H 1.08995 * 109.47089 * 301.41060 * 1 2 3 25 25 H 0.97000 * 120.00480 * 179.97438 * 7 6 4 26 26 H 1.00906 * 110.99965 * 28.29958 * 12 2 1 27 27 H 1.09000 * 109.50429 * 302.37753 * 15 13 12 28 28 H 1.08998 * 109.50518 * 62.49063 * 15 13 12 29 29 H 1.09002 * 109.46194 * 299.15979 * 16 15 13 30 30 H 1.09004 * 109.45276 * 179.18977 * 16 15 13 31 31 H 1.00899 * 111.00560 * 62.35807 * 17 16 15 32 32 H 1.09006 * 109.47356 * 299.95319 * 20 18 17 33 33 H 1.09000 * 109.46833 * 59.95016 * 20 18 17 34 34 H 1.09002 * 109.47344 * 179.97438 * 20 18 17 35 35 H 1.09001 * 109.49892 * 180.88155 * 21 18 17 36 36 H 1.08996 * 109.50160 * 60.76011 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3212 -1.1204 4.0079 9 1 1.3426 -2.1617 4.4118 10 1 3.6291 -1.7584 3.7122 11 1 2.4865 -0.1414 5.1123 12 7 2.0196 -0.6925 -1.1994 13 6 3.3395 -0.1855 -1.5981 14 1 3.9109 0.0814 -0.7091 15 6 3.1662 1.0496 -2.4864 16 6 4.5415 1.5369 -2.9481 17 7 5.2166 0.4667 -3.6933 18 6 5.4364 -0.7127 -2.8466 19 1 6.0318 -0.4307 -1.9782 20 6 6.1793 -1.7840 -3.6475 21 6 4.0878 -1.2673 -2.3819 22 1 -0.3634 0.4918 -0.9024 23 1 -0.3633 -1.0273 0.0252 24 1 -0.3633 0.5356 0.8770 25 1 0.7080 1.1608 3.4844 26 1 1.3582 -0.6145 -1.9574 27 1 2.5613 0.7909 -3.3554 28 1 2.6717 1.8388 -1.9200 29 1 5.1411 1.8085 -2.0792 30 1 4.4206 2.4077 -3.5925 31 1 4.6997 0.2236 -4.5250 32 1 5.5840 -2.0667 -4.5158 33 1 7.1399 -1.3892 -3.9786 34 1 6.3430 -2.6594 -3.0190 35 1 4.2519 -2.1333 -1.7407 36 1 3.4974 -1.5624 -3.2492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246353485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:10 Heat of formation + Delta-G solvation = -36.388905 kcal Electronic energy + Delta-G solvation = -14814.478317 eV Core-core repulsion = 12524.587450 eV Total energy + Delta-G solvation = -2289.890867 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.25845 -37.30052 -34.63779 -33.15010 -31.99808 -28.61327 -27.80577 -27.27656 -23.66608 -22.60005 -21.90640 -21.26184 -18.26612 -16.95061 -16.71011 -16.04504 -15.89893 -15.28502 -15.17593 -14.89345 -14.47955 -14.04828 -13.42771 -13.34704 -12.93495 -12.85718 -12.71659 -12.62057 -12.39230 -12.31827 -12.04906 -12.00529 -11.76452 -11.62166 -11.36650 -11.10280 -10.53260 -9.36144 -8.96029 -8.11406 -6.23143 1.38806 1.39245 1.49983 2.40854 3.14615 3.29797 3.53255 3.84298 4.06295 4.13344 4.30662 4.36823 4.47622 4.61343 4.71166 4.75200 4.87966 4.90444 4.92997 5.00654 5.06238 5.08121 5.16678 5.28198 5.34144 5.38543 5.48678 5.68426 5.82526 6.09554 6.29641 6.47613 6.55706 6.90072 6.96783 7.46435 8.93023 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035676 B = 0.008175 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.649851 B = 3424.395137 C = 3773.933152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.218 3.782 3 H -0.029 1.029 4 C -0.511 4.511 5 H 0.047 0.953 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.272 1.272 11 H -0.282 1.282 12 N -0.683 5.683 13 C 0.094 3.906 14 H 0.040 0.960 15 C -0.174 4.174 16 C 0.068 3.932 17 N -0.675 5.675 18 C 0.084 3.916 19 H 0.063 0.937 20 C -0.134 4.134 21 C -0.124 4.124 22 H 0.031 0.969 23 H 0.033 0.967 24 H 0.061 0.939 25 H 0.261 0.739 26 H 0.326 0.674 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.347 0.653 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.662 -1.556 -11.974 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.109 3.891 3 H -0.012 1.012 4 C -0.550 4.550 5 H 0.066 0.934 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.200 1.200 10 H -0.197 1.197 11 H -0.207 1.207 12 N -0.312 5.312 13 C -0.017 4.017 14 H 0.058 0.942 15 C -0.215 4.215 16 C -0.063 4.063 17 N -0.304 5.304 18 C -0.027 4.027 19 H 0.081 0.919 20 C -0.192 4.192 21 C -0.164 4.164 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.143 0.857 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.165 0.835 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.478 -1.728 -11.363 13.713 hybrid contribution -1.258 0.344 1.031 1.662 sum 6.221 -1.385 -10.333 12.140 Atomic orbital electron populations 1.21784 0.97812 0.99556 0.99961 1.18921 0.91771 0.90412 0.87963 1.01167 1.21434 1.30484 1.11818 0.91231 0.93444 1.25714 0.95605 0.95861 1.01845 1.69998 1.38089 1.24251 1.23965 0.85572 0.78779 0.78346 0.79037 1.20020 1.19683 1.20744 1.60678 1.03648 1.59982 1.06939 1.21488 0.91206 0.93155 0.95832 0.94173 1.22902 1.00069 0.98638 0.99921 1.21886 0.91244 0.94899 0.98226 1.60775 1.52132 1.08975 1.08544 1.21568 0.94418 0.90756 0.95958 0.91871 1.21714 1.00463 0.97093 0.99885 1.22187 0.96764 0.97863 0.99555 0.95042 0.94820 0.91992 0.92983 0.85721 0.90938 0.93807 0.92350 0.89067 0.83497 0.91787 0.91438 0.91893 0.92620 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.54 8.92 71.98 0.64 -5.89 16 2 C 0.22 11.26 2.41 44.17 0.11 11.37 16 3 H -0.03 -1.67 7.20 -2.39 -0.02 -1.69 16 4 C -0.51 -29.28 8.64 25.60 0.22 -29.06 16 5 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 6 C 0.01 0.44 5.30 84.66 0.45 0.89 16 7 N -0.92 -54.20 11.33 21.45 0.24 -53.96 16 8 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 N -0.68 -29.27 6.06 -472.92 -2.87 -32.14 16 13 C 0.09 3.50 2.33 44.99 0.10 3.61 16 14 H 0.04 1.81 7.73 -2.39 -0.02 1.79 16 15 C -0.17 -5.43 5.32 30.64 0.16 -5.27 16 16 C 0.07 1.78 6.55 86.33 0.57 2.34 16 17 N -0.67 -15.90 6.50 -491.68 -3.20 -19.10 16 18 C 0.08 2.13 3.03 44.94 0.14 2.27 16 19 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 20 C -0.13 -2.66 9.47 71.98 0.68 -1.98 16 21 C -0.12 -3.75 4.97 30.65 0.15 -3.60 16 22 H 0.03 1.33 8.10 -2.38 -0.02 1.31 16 23 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.06 3.38 6.11 -2.39 -0.01 3.37 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.33 12.52 8.00 -89.69 -0.72 11.81 16 27 H 0.07 2.00 8.09 -2.39 -0.02 1.99 16 28 H 0.04 1.56 7.56 -2.39 -0.02 1.54 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.35 7.01 8.79 -89.69 -0.79 6.22 16 32 H 0.06 1.12 8.14 -2.38 -0.02 1.11 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -61.17 282.69 -1.03 -62.21 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -0.46 Total: 21.26 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.22 Total: -25.32 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -5.82 Total: -105.19 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -61.17 -1.03 -62.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246353485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.816 kcal (2) G-P(sol) polarization free energy of solvation -61.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds