Wall clock time and date at job start Sun Mar 29 2020 21:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99575 * 2 1 4 4 H 1.48497 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46852 * 299.99834 * 3 2 1 6 6 H 1.48500 * 109.47462 * 60.00020 * 3 2 1 7 7 C 1.37876 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99953 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46898 * 180.02562 * 9 7 2 11 11 C 1.39376 * 119.48788 * 270.23027 * 10 9 7 12 12 C 1.36174 * 121.07953 * 180.28460 * 11 10 9 13 13 C 1.40366 * 119.51962 * 359.74983 * 12 11 10 14 14 C 1.40429 * 122.08240 * 179.97438 * 13 12 11 15 15 N 1.31250 * 119.88199 * 180.02562 * 14 13 12 16 16 C 1.32601 * 122.77601 * 0.02562 * 15 14 13 17 17 C 1.36173 * 121.88050 * 359.97438 * 16 15 14 18 18 C 1.40694 * 118.66342 * 359.97438 * 17 16 15 19 19 C 1.36213 * 119.48810 * 90.00238 * 10 9 7 20 20 H 0.96996 * 120.00350 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.46615 * 60.00137 * 9 7 2 22 22 H 1.08994 * 109.46954 * 300.00429 * 9 7 2 23 23 H 1.07993 * 119.45846 * 0.02562 * 11 10 9 24 24 H 1.08005 * 120.23664 * 179.77004 * 12 11 10 25 25 H 1.08001 * 120.06195 * 0.02881 * 14 13 12 26 26 H 1.08004 * 119.06296 * 180.02562 * 16 15 14 27 27 H 1.07995 * 120.67106 * 179.97438 * 17 16 15 28 28 H 1.08002 * 120.26510 * 0.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2306 -3.6445 0.0027 11 6 2.6801 -4.1639 -1.2100 12 6 3.5605 -5.2021 -1.2469 13 6 4.0276 -5.7559 -0.0447 14 6 4.9352 -6.8272 -0.0200 15 7 5.3434 -7.3120 1.1294 16 6 4.9344 -6.8332 2.2963 17 6 4.0557 -5.7963 2.3802 18 6 3.5735 -5.2224 1.1895 19 6 2.6663 -4.1531 1.1889 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5574 -0.8880 22 1 0.6248 -2.5563 0.8919 23 1 2.3213 -3.7386 -2.1355 24 1 3.8971 -5.5964 -2.1945 25 1 5.2968 -7.2514 -0.9450 26 1 5.3095 -7.2778 3.2064 27 1 3.7353 -5.4221 3.3412 28 1 2.3124 -3.7391 2.1215 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056559.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:12 Heat of formation + Delta-G solvation = 35.890468 kcal Electronic energy + Delta-G solvation = -12863.856151 eV Core-core repulsion = 10650.856716 eV Total energy + Delta-G solvation = -2212.999435 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.36862 -37.21412 -33.44396 -32.58283 -31.35425 -29.33867 -27.44724 -24.06645 -23.35456 -21.94036 -21.18092 -17.33858 -16.68896 -16.37058 -16.01836 -14.71009 -14.51500 -13.89805 -13.64618 -13.54480 -12.98298 -12.52599 -12.24352 -11.78847 -11.35160 -11.25225 -10.82196 -10.66947 -10.45157 -9.86586 -9.78548 -9.54444 -9.18565 -8.52052 -8.25875 -7.60174 -6.13869 -4.18598 0.76086 1.36855 2.36191 3.23836 3.31736 3.36240 3.53325 4.34719 4.53599 4.62958 4.91499 5.16337 5.19419 5.21646 5.40489 5.53028 5.78217 5.85633 5.90841 6.16264 6.31347 6.49646 6.53295 6.92569 6.97573 6.99649 7.33620 7.47325 7.66832 7.81483 8.18710 8.21922 8.86689 9.46122 10.95971 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.049389 B = 0.006886 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.793633 B = 4065.236998 C = 4196.589231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.043 3.957 10 C -0.012 4.012 11 C -0.101 4.101 12 C -0.104 4.104 13 C -0.127 4.127 14 C 0.142 3.858 15 N -0.505 5.505 16 C 0.061 3.939 17 C -0.156 4.156 18 C -0.018 4.018 19 C -0.133 4.133 20 H 0.263 0.737 21 H 0.032 0.968 22 H 0.032 0.968 23 H 0.126 0.874 24 H 0.125 0.875 25 H 0.156 0.844 26 H 0.145 0.855 27 H 0.132 0.868 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.126 -9.819 0.513 11.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.006 3.994 10 C -0.013 4.013 11 C -0.119 4.119 12 C -0.124 4.124 13 C -0.129 4.129 14 C -0.029 4.029 15 N -0.214 5.214 16 C -0.082 4.082 17 C -0.175 4.175 18 C -0.023 4.023 19 C -0.151 4.151 20 H 0.072 0.928 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.144 0.856 24 H 0.143 0.857 25 H 0.173 0.827 26 H 0.162 0.838 27 H 0.150 0.850 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.566 -10.401 0.689 12.320 hybrid contribution -0.203 1.762 0.042 1.774 sum 6.362 -8.639 0.731 10.754 Atomic orbital electron populations 1.69957 1.06052 1.26909 1.50155 1.25008 0.94899 0.99338 0.94970 0.86459 0.80134 0.83305 0.77724 1.19630 1.20841 1.20851 1.21052 0.93088 0.89662 1.51502 0.92347 1.18473 0.92564 0.89537 0.98794 1.20594 0.94774 0.94162 0.91775 1.21043 0.96721 0.95400 0.98724 1.20889 0.98018 0.97115 0.96403 1.18936 1.00752 0.99128 0.94100 1.23047 0.92163 0.91630 0.96072 1.67342 1.25440 1.30125 0.98451 1.21984 0.95887 0.94880 0.95451 1.21880 0.99321 0.98056 0.98288 1.18245 0.95984 0.95506 0.92525 1.20846 0.98762 0.96380 0.99070 0.92752 0.94944 0.94985 0.85640 0.85666 0.82691 0.83772 0.84981 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 15 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.51 -13.98 9.09 -34.44 -0.31 -14.29 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 9 C 0.04 1.06 5.07 -29.03 -0.15 0.92 15 10 C -0.01 -0.24 5.04 -104.93 -0.53 -0.77 15 11 C -0.10 -1.83 9.58 -39.90 -0.38 -2.22 15 12 C -0.10 -1.63 9.81 -39.52 -0.39 -2.02 15 13 C -0.13 -2.09 5.74 -106.86 -0.61 -2.70 15 14 C 0.14 2.08 11.05 -16.98 -0.19 1.89 15 15 N -0.51 -7.83 10.30 -13.15 -0.14 -7.97 15 16 C 0.06 0.87 11.07 -17.96 -0.20 0.67 15 17 C -0.16 -2.36 9.88 -39.40 -0.39 -2.74 15 18 C -0.02 -0.31 5.75 -106.81 -0.61 -0.92 15 19 C -0.13 -2.56 9.42 -39.56 -0.37 -2.93 15 20 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 21 H 0.03 0.83 8.08 -51.93 -0.42 0.41 15 22 H 0.03 0.83 8.07 -51.93 -0.42 0.41 15 23 H 0.13 2.15 8.06 -52.49 -0.42 1.73 15 24 H 0.13 1.51 8.06 -52.48 -0.42 1.08 15 25 H 0.16 1.73 8.06 -52.49 -0.42 1.31 15 26 H 0.14 1.63 8.06 -52.48 -0.42 1.21 15 27 H 0.13 1.68 8.06 -52.49 -0.42 1.26 15 28 H 0.13 2.37 8.06 -52.49 -0.42 1.95 15 LS Contribution 251.94 15.07 3.80 3.80 Total: -1.00 -29.79 251.94 -7.77 -37.56 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -2.92 Total: -0.93 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -4.23 Total: -23.58 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.60 Total: -32.90 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.79 -7.77 -37.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056559.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.452 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds