Wall clock time and date at job start Sun Mar 29 2020 21:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99575 * 2 1 4 4 H 1.48497 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46852 * 299.99834 * 3 2 1 6 6 H 1.48500 * 109.47462 * 60.00020 * 3 2 1 7 7 C 1.37876 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99953 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46898 * 180.02562 * 9 7 2 11 11 C 1.39376 * 119.48788 * 270.23027 * 10 9 7 12 12 C 1.36174 * 121.07953 * 180.28460 * 11 10 9 13 13 C 1.40366 * 119.51962 * 359.74983 * 12 11 10 14 14 C 1.40429 * 122.08240 * 179.97438 * 13 12 11 15 15 N 1.31250 * 119.88199 * 180.02562 * 14 13 12 16 16 C 1.32601 * 122.77601 * 0.02562 * 15 14 13 17 17 C 1.36173 * 121.88050 * 359.97438 * 16 15 14 18 18 C 1.40694 * 118.66342 * 359.97438 * 17 16 15 19 19 C 1.36213 * 119.48810 * 90.00238 * 10 9 7 20 20 H 0.96996 * 120.00350 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.46615 * 60.00137 * 9 7 2 22 22 H 1.08994 * 109.46954 * 300.00429 * 9 7 2 23 23 H 1.07993 * 119.45846 * 0.02562 * 11 10 9 24 24 H 1.08005 * 120.23664 * 179.77004 * 12 11 10 25 25 H 1.08001 * 120.06195 * 0.02881 * 14 13 12 26 26 H 1.08004 * 119.06296 * 180.02562 * 16 15 14 27 27 H 1.07995 * 120.67106 * 179.97438 * 17 16 15 28 28 H 1.08002 * 120.26510 * 0.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2306 -3.6445 0.0027 11 6 2.6801 -4.1639 -1.2100 12 6 3.5605 -5.2021 -1.2469 13 6 4.0276 -5.7559 -0.0447 14 6 4.9352 -6.8272 -0.0200 15 7 5.3434 -7.3120 1.1294 16 6 4.9344 -6.8332 2.2963 17 6 4.0557 -5.7963 2.3802 18 6 3.5735 -5.2224 1.1895 19 6 2.6663 -4.1531 1.1889 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5574 -0.8880 22 1 0.6248 -2.5563 0.8919 23 1 2.3213 -3.7386 -2.1355 24 1 3.8971 -5.5964 -2.1945 25 1 5.2968 -7.2514 -0.9450 26 1 5.3095 -7.2778 3.2064 27 1 3.7353 -5.4221 3.3412 28 1 2.3124 -3.7391 2.1215 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056559.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:12 Heat of formation + Delta-G solvation = 19.273752 kcal Electronic energy + Delta-G solvation = -12864.576706 eV Core-core repulsion = 10650.856716 eV Total energy + Delta-G solvation = -2213.719990 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.085 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.62685 -38.57374 -35.35863 -33.86478 -32.99792 -30.62324 -29.20768 -25.80613 -24.66862 -23.27390 -22.71375 -18.64788 -18.54571 -17.89021 -17.33617 -16.53647 -15.78155 -15.16773 -15.03475 -14.89786 -14.47157 -14.29062 -13.54290 -13.42871 -13.22630 -12.79500 -12.60103 -12.46649 -11.88795 -11.61433 -11.53567 -11.07965 -10.64388 -10.40746 -9.70261 -8.91889 -8.24059 -6.37554 -0.47597 0.03594 1.07326 1.38070 1.39118 1.52076 2.19761 2.40675 3.07374 3.22283 3.58714 3.71667 3.91960 3.99957 4.08809 4.30872 4.43223 4.54062 4.75539 4.89549 4.96357 5.08997 5.22340 5.29468 5.34005 5.52979 5.70235 5.77265 5.94927 5.99727 6.14353 6.74877 7.05862 7.31488 8.85514 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.049389 B = 0.006886 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.793633 B = 4065.236998 C = 4196.589231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.052 3.948 10 C -0.037 4.037 11 C -0.127 4.127 12 C -0.077 4.077 13 C -0.142 4.142 14 C 0.152 3.848 15 N -0.517 5.517 16 C 0.068 3.932 17 C -0.167 4.167 18 C -0.033 4.033 19 C -0.144 4.144 20 H 0.266 0.734 21 H 0.011 0.989 22 H 0.005 0.995 23 H 0.128 0.872 24 H 0.170 0.830 25 H 0.196 0.804 26 H 0.177 0.823 27 H 0.150 0.850 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.383 -11.030 0.205 13.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.015 3.985 10 C -0.038 4.038 11 C -0.145 4.145 12 C -0.097 4.097 13 C -0.144 4.144 14 C -0.019 4.019 15 N -0.225 5.225 16 C -0.075 4.075 17 C -0.187 4.187 18 C -0.039 4.039 19 C -0.162 4.162 20 H 0.075 0.925 21 H 0.029 0.971 22 H 0.023 0.977 23 H 0.146 0.854 24 H 0.188 0.812 25 H 0.212 0.788 26 H 0.194 0.806 27 H 0.167 0.833 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.826 -11.623 0.385 14.599 hybrid contribution -0.846 1.986 0.185 2.167 sum 7.980 -9.637 0.570 12.525 Atomic orbital electron populations 1.70072 1.07611 1.28005 1.51069 1.25895 0.95752 1.03035 0.94461 0.85392 0.78855 0.78760 0.78024 1.19073 1.19990 1.20221 1.21349 0.93020 0.91097 1.51279 0.92823 1.18207 0.92925 0.91004 0.96362 1.20317 0.95521 0.94155 0.93825 1.21048 0.98628 0.97188 0.97633 1.21275 0.95413 0.94889 0.98079 1.19274 1.01343 0.99902 0.93863 1.23637 0.90615 0.90280 0.97376 1.67476 1.25691 1.30368 0.99010 1.22515 0.94589 0.93915 0.96447 1.22100 0.99760 0.98509 0.98314 1.18450 0.95831 0.95163 0.94407 1.20813 0.99708 0.97443 0.98224 0.92458 0.97068 0.97661 0.85423 0.81224 0.78773 0.80592 0.83272 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 13.29 21.45 0.28 -54.72 15 2 C 0.01 0.40 5.46 84.65 0.46 0.86 15 3 Si 0.97 43.71 29.54 68.60 2.03 45.74 15 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 15 7 C -0.53 -29.79 9.09 25.60 0.23 -29.56 15 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 15 9 C 0.05 2.72 5.07 29.10 0.15 2.87 15 10 C -0.04 -1.60 5.04 -20.06 -0.10 -1.70 15 11 C -0.13 -4.62 9.58 22.06 0.21 -4.41 15 12 C -0.08 -2.22 9.81 22.31 0.22 -2.00 15 13 C -0.14 -4.30 5.74 -21.32 -0.12 -4.43 15 14 C 0.15 3.83 11.05 85.31 0.94 4.77 15 15 N -0.52 -14.08 10.30 -195.53 -2.01 -16.09 15 16 C 0.07 1.72 11.07 84.10 0.93 2.66 15 17 C -0.17 -4.75 9.88 22.39 0.22 -4.53 15 18 C -0.03 -1.15 5.75 -21.28 -0.12 -1.27 15 19 C -0.14 -5.71 9.42 22.28 0.21 -5.50 15 20 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 21 H 0.01 0.61 8.08 -2.39 -0.02 0.59 15 22 H 0.01 0.29 8.07 -2.39 -0.02 0.27 15 23 H 0.13 4.44 8.06 -2.91 -0.02 4.42 15 24 H 0.17 3.29 8.06 -2.91 -0.02 3.27 15 25 H 0.20 3.25 8.06 -2.91 -0.02 3.23 15 26 H 0.18 3.27 8.06 -2.91 -0.02 3.25 15 27 H 0.15 3.59 8.06 -2.91 -0.02 3.56 15 28 H 0.12 4.72 8.06 -2.91 -0.02 4.70 15 Total: -1.00 -65.56 251.94 4.68 -60.88 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.15 Total: 6.43 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 3.23 Total: -42.24 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -1.73 Total: -70.81 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -65.56 4.68 -60.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056559.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.153 kcal (2) G-P(sol) polarization free energy of solvation -65.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds