Wall clock time and date at job start Sun Mar 29 2020 22:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47337 * 2 1 4 4 H 1.09001 * 109.47671 * 180.81986 * 3 2 1 5 5 C 1.50704 * 109.47249 * 300.81904 * 3 2 1 6 6 H 1.08003 * 119.99684 * 119.99815 * 5 3 2 7 7 C 1.37869 * 120.00090 * 299.72551 * 5 3 2 8 8 N 1.31514 * 119.99793 * 0.27540 * 7 5 3 9 9 Si 1.86799 * 120.00038 * 180.26904 * 7 5 3 10 10 H 1.48498 * 109.47319 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46851 * 120.00410 * 9 7 5 12 12 H 1.48504 * 109.47271 * 239.99939 * 9 7 5 13 13 N 1.46901 * 109.47131 * 60.82009 * 3 2 1 14 14 C 1.46902 * 111.00035 * 85.68154 * 13 3 2 15 15 H 1.09000 * 110.60905 * 320.78585 * 14 13 3 16 16 C 1.54253 * 110.69345 * 83.85516 * 14 13 3 17 17 O 1.45593 * 106.36968 * 117.33336 * 16 14 13 18 18 C 1.34526 * 109.63971 * 21.26057 * 17 16 14 19 19 O 1.20825 * 126.42570 * 147.15679 * 18 17 16 20 20 C 1.51782 * 107.14095 * 327.18013 * 18 17 16 21 21 H 1.09001 * 109.47559 * 65.18367 * 1 2 3 22 22 H 1.09000 * 109.47608 * 185.18342 * 1 2 3 23 23 H 1.09005 * 109.47358 * 305.18528 * 1 2 3 24 24 H 1.08994 * 109.47413 * 239.99805 * 2 1 3 25 25 H 1.09003 * 109.46965 * 120.00137 * 2 1 3 26 26 H 0.97006 * 119.99698 * 179.97438 * 8 7 5 27 27 H 1.00907 * 111.00063 * 209.62844 * 13 3 2 28 28 H 1.09003 * 110.07530 * 236.55749 * 16 14 13 29 29 H 1.08996 * 110.07994 * 358.04585 * 16 14 13 30 30 H 1.09004 * 110.61054 * 272.11563 * 20 18 17 31 31 H 1.08998 * 110.60956 * 149.13175 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1299 1.4425 -0.0147 5 6 1.5212 2.1587 -1.2202 6 1 0.9017 3.0364 -1.1085 7 6 1.8419 1.6970 -2.4791 8 7 2.5962 0.6283 -2.6150 9 14 1.2050 2.5893 -3.9915 10 1 0.3850 3.7536 -3.5707 11 1 2.3525 3.0615 -4.8074 12 1 0.3719 1.6624 -4.7989 13 7 1.5666 2.1292 1.2092 14 6 2.4743 1.8911 2.3394 15 1 2.8311 0.8611 2.3345 16 6 3.6589 2.8785 2.3045 17 8 3.5633 3.6772 3.5180 18 6 2.8271 3.0219 4.4337 19 8 2.9734 3.0599 5.6325 20 6 1.7788 2.2256 3.6783 21 1 -0.3634 0.4313 -0.9328 22 1 -0.3634 -1.0234 0.0928 23 1 -0.3634 0.5922 0.8399 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 2.8216 0.3032 -3.5007 27 1 1.4495 3.1173 1.0415 28 1 4.6017 2.3315 2.2899 29 1 3.5855 3.5201 1.4265 30 1 0.8876 2.8296 3.5073 31 1 1.5273 1.3129 4.2185 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155413.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:52 Heat of formation + Delta-G solvation = -86.192304 kcal Electronic energy + Delta-G solvation = -14578.043021 eV Core-core repulsion = 12052.440760 eV Total energy + Delta-G solvation = -2525.602261 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.69851 -37.55781 -36.21851 -33.33156 -31.30233 -29.49058 -27.44706 -25.86701 -23.35418 -21.47334 -21.07068 -19.08212 -17.20120 -16.61395 -16.33708 -15.98071 -15.09651 -14.23043 -13.92545 -13.69848 -13.31977 -13.09721 -12.50948 -12.13142 -11.96969 -11.61834 -11.19935 -11.02674 -10.84882 -10.63298 -10.41528 -10.20236 -10.17682 -9.79547 -9.50294 -8.93443 -8.61186 -7.55169 -6.15086 -4.21507 2.04525 3.20978 3.30265 3.33120 3.52636 4.17537 4.31338 4.64201 4.80594 5.05549 5.18146 5.43507 5.47925 5.69476 5.95991 6.06498 6.38760 6.57558 6.71640 6.85369 7.07761 7.10735 7.32658 7.54978 7.58161 7.63104 7.69321 8.05098 8.17025 8.42164 8.85794 9.44567 10.90805 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046066 B = 0.007837 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.676894 B = 3572.070725 C = 3849.426436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C 0.213 3.787 4 H 0.005 0.995 5 C -0.518 4.518 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.670 5.670 14 C 0.061 3.939 15 H 0.102 0.898 16 C 0.025 3.975 17 O -0.361 6.361 18 C 0.487 3.513 19 O -0.463 6.463 20 C -0.178 4.178 21 H 0.052 0.948 22 H 0.014 0.986 23 H 0.047 0.953 24 H 0.088 0.912 25 H 0.010 0.990 26 H 0.262 0.738 27 H 0.338 0.662 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 1.217 6.012 6.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.143 4.143 3 C 0.106 3.894 4 H 0.023 0.977 5 C -0.556 4.556 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.301 5.301 14 C -0.051 4.051 15 H 0.120 0.880 16 C -0.051 4.051 17 O -0.279 6.279 18 C 0.328 3.672 19 O -0.346 6.346 20 C -0.217 4.217 21 H 0.071 0.929 22 H 0.033 0.967 23 H 0.066 0.934 24 H 0.106 0.894 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.157 0.843 28 H 0.101 0.899 29 H 0.127 0.873 30 H 0.139 0.861 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.607 0.810 6.604 6.681 hybrid contribution 0.425 0.843 -1.292 1.600 sum -0.183 1.654 5.312 5.566 Atomic orbital electron populations 1.21448 0.97360 0.97347 1.01656 1.21460 0.95250 0.97999 0.99563 1.19211 0.93376 0.91709 0.85073 0.97727 1.21176 1.32014 1.12256 0.90174 0.92072 1.24872 0.94889 0.94954 0.98984 1.69883 1.36690 1.22807 1.23144 0.86509 0.78682 0.79768 0.82885 1.19724 1.21084 1.20934 1.60790 1.46430 1.16470 1.06420 1.22782 0.90541 0.99436 0.92352 0.88042 1.25042 1.01313 0.94211 0.84567 1.87031 1.70239 1.44506 1.26087 1.23558 0.81322 0.76176 0.86177 1.90667 1.71238 1.59676 1.13024 1.23079 0.99442 1.02525 0.96612 0.92884 0.96705 0.93389 0.89406 0.97082 0.92850 0.84302 0.89934 0.87279 0.86144 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 9.47 37.15 0.35 -2.15 16 2 C -0.10 -2.29 5.57 -26.74 -0.15 -2.44 16 3 C 0.21 4.67 2.16 -68.87 -0.15 4.52 16 4 H 0.01 0.12 7.64 -51.93 -0.40 -0.28 16 5 C -0.52 -12.68 7.38 -34.44 -0.25 -12.93 16 6 H 0.06 1.49 7.61 -52.48 -0.40 1.10 16 7 C 0.07 1.67 5.31 -17.82 -0.09 1.57 16 8 N -0.89 -23.52 11.34 55.43 0.63 -22.89 16 9 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.67 -11.90 5.19 -99.42 -0.52 -12.42 16 14 C 0.06 0.91 3.23 -66.25 -0.21 0.70 16 15 H 0.10 1.53 7.27 -51.93 -0.38 1.15 16 16 C 0.02 0.35 7.28 37.81 0.28 0.63 16 17 O -0.36 -5.67 11.07 -39.60 -0.44 -6.10 16 18 C 0.49 7.54 8.57 36.54 0.31 7.86 16 19 O -0.46 -8.36 18.00 -18.28 -0.33 -8.69 16 20 C -0.18 -2.36 6.74 -26.54 -0.18 -2.54 16 21 H 0.05 1.19 7.39 -51.93 -0.38 0.81 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 23 H 0.05 0.94 7.47 -51.93 -0.39 0.56 16 24 H 0.09 2.19 6.10 -51.93 -0.32 1.87 16 25 H 0.01 0.22 7.47 -51.93 -0.39 -0.17 16 26 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 27 H 0.34 5.90 7.82 -39.29 -0.31 5.59 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.11 1.59 7.72 -51.93 -0.40 1.19 16 30 H 0.12 1.53 8.03 -51.93 -0.42 1.11 16 31 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 259.42 15.07 3.91 3.91 Total: -1.00 -26.96 259.42 -6.04 -33.00 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.18 Total: 2.98 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -0.10 Total: -4.78 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.11 Total: -35.31 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.77 Total: -14.80 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.96 -6.04 -33.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155413.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.192 kcal (2) G-P(sol) polarization free energy of solvation -26.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds