Wall clock time and date at job start Sun Mar 29 2020 22:16:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52994 * 109.47337 * 2 1
4 4 H 1.09001 * 109.47671 * 180.81986 * 3 2 1
5 5 C 1.50704 * 109.47249 * 300.81904 * 3 2 1
6 6 H 1.08003 * 119.99684 * 119.99815 * 5 3 2
7 7 C 1.37869 * 120.00090 * 299.72551 * 5 3 2
8 8 N 1.31514 * 119.99793 * 0.27540 * 7 5 3
9 9 Si 1.86799 * 120.00038 * 180.26904 * 7 5 3
10 10 H 1.48498 * 109.47319 * 0.02562 * 9 7 5
11 11 H 1.48502 * 109.46851 * 120.00410 * 9 7 5
12 12 H 1.48504 * 109.47271 * 239.99939 * 9 7 5
13 13 N 1.46901 * 109.47131 * 60.82009 * 3 2 1
14 14 C 1.46902 * 111.00035 * 85.68154 * 13 3 2
15 15 H 1.09000 * 110.60905 * 320.78585 * 14 13 3
16 16 C 1.54253 * 110.69345 * 83.85516 * 14 13 3
17 17 O 1.45593 * 106.36968 * 117.33336 * 16 14 13
18 18 C 1.34526 * 109.63971 * 21.26057 * 17 16 14
19 19 O 1.20825 * 126.42570 * 147.15679 * 18 17 16
20 20 C 1.51782 * 107.14095 * 327.18013 * 18 17 16
21 21 H 1.09001 * 109.47559 * 65.18367 * 1 2 3
22 22 H 1.09000 * 109.47608 * 185.18342 * 1 2 3
23 23 H 1.09005 * 109.47358 * 305.18528 * 1 2 3
24 24 H 1.08994 * 109.47413 * 239.99805 * 2 1 3
25 25 H 1.09003 * 109.46965 * 120.00137 * 2 1 3
26 26 H 0.97006 * 119.99698 * 179.97438 * 8 7 5
27 27 H 1.00907 * 111.00063 * 209.62844 * 13 3 2
28 28 H 1.09003 * 110.07530 * 236.55749 * 16 14 13
29 29 H 1.08996 * 110.07994 * 358.04585 * 16 14 13
30 30 H 1.09004 * 110.61054 * 272.11563 * 20 18 17
31 31 H 1.08998 * 110.60956 * 149.13175 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 3.1299 1.4425 -0.0147
5 6 1.5212 2.1587 -1.2202
6 1 0.9017 3.0364 -1.1085
7 6 1.8419 1.6970 -2.4791
8 7 2.5962 0.6283 -2.6150
9 14 1.2050 2.5893 -3.9915
10 1 0.3850 3.7536 -3.5707
11 1 2.3525 3.0615 -4.8074
12 1 0.3719 1.6624 -4.7989
13 7 1.5666 2.1292 1.2092
14 6 2.4743 1.8911 2.3394
15 1 2.8311 0.8611 2.3345
16 6 3.6589 2.8785 2.3045
17 8 3.5633 3.6772 3.5180
18 6 2.8271 3.0219 4.4337
19 8 2.9734 3.0599 5.6325
20 6 1.7788 2.2256 3.6783
21 1 -0.3634 0.4313 -0.9328
22 1 -0.3634 -1.0234 0.0928
23 1 -0.3634 0.5922 0.8399
24 1 1.8933 -0.5138 -0.8899
25 1 1.8933 -0.5139 0.8900
26 1 2.8216 0.3032 -3.5007
27 1 1.4495 3.1173 1.0415
28 1 4.6017 2.3315 2.2899
29 1 3.5855 3.5201 1.4265
30 1 0.8876 2.8296 3.5073
31 1 1.5273 1.3129 4.2185
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001255155413.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:16:52
Heat of formation + Delta-G solvation = -86.192304 kcal
Electronic energy + Delta-G solvation = -14578.043021 eV
Core-core repulsion = 12052.440760 eV
Total energy + Delta-G solvation = -2525.602261 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-40.69851 -37.55781 -36.21851 -33.33156 -31.30233 -29.49058 -27.44706 -25.86701
-23.35418 -21.47334 -21.07068 -19.08212 -17.20120 -16.61395 -16.33708 -15.98071
-15.09651 -14.23043 -13.92545 -13.69848 -13.31977 -13.09721 -12.50948 -12.13142
-11.96969 -11.61834 -11.19935 -11.02674 -10.84882 -10.63298 -10.41528 -10.20236
-10.17682 -9.79547 -9.50294 -8.93443 -8.61186 -7.55169 -6.15086 -4.21507
2.04525 3.20978 3.30265 3.33120 3.52636 4.17537 4.31338 4.64201
4.80594 5.05549 5.18146 5.43507 5.47925 5.69476 5.95991 6.06498
6.38760 6.57558 6.71640 6.85369 7.07761 7.10735 7.32658 7.54978
7.58161 7.63104 7.69321 8.05098 8.17025 8.42164 8.85794 9.44567
10.90805
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.046066 B = 0.007837 C = 0.007272
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 607.676894 B = 3572.070725 C = 3849.426436
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.104 4.104
3 C 0.213 3.787
4 H 0.005 0.995
5 C -0.518 4.518
6 H 0.061 0.939
7 C 0.065 3.935
8 N -0.887 5.887
9 Si 0.894 3.106
10 H -0.273 1.273
11 H -0.285 1.285
12 H -0.283 1.283
13 N -0.670 5.670
14 C 0.061 3.939
15 H 0.102 0.898
16 C 0.025 3.975
17 O -0.361 6.361
18 C 0.487 3.513
19 O -0.463 6.463
20 C -0.178 4.178
21 H 0.052 0.948
22 H 0.014 0.986
23 H 0.047 0.953
24 H 0.088 0.912
25 H 0.010 0.990
26 H 0.262 0.738
27 H 0.338 0.662
28 H 0.082 0.918
29 H 0.109 0.891
30 H 0.121 0.879
31 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.424 1.217 6.012 6.149
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C -0.143 4.143
3 C 0.106 3.894
4 H 0.023 0.977
5 C -0.556 4.556
6 H 0.079 0.921
7 C -0.137 4.137
8 N -0.525 5.525
9 Si 0.722 3.278
10 H -0.197 1.197
11 H -0.211 1.211
12 H -0.209 1.209
13 N -0.301 5.301
14 C -0.051 4.051
15 H 0.120 0.880
16 C -0.051 4.051
17 O -0.279 6.279
18 C 0.328 3.672
19 O -0.346 6.346
20 C -0.217 4.217
21 H 0.071 0.929
22 H 0.033 0.967
23 H 0.066 0.934
24 H 0.106 0.894
25 H 0.029 0.971
26 H 0.072 0.928
27 H 0.157 0.843
28 H 0.101 0.899
29 H 0.127 0.873
30 H 0.139 0.861
31 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -0.607 0.810 6.604 6.681
hybrid contribution 0.425 0.843 -1.292 1.600
sum -0.183 1.654 5.312 5.566
Atomic orbital electron populations
1.21448 0.97360 0.97347 1.01656 1.21460 0.95250 0.97999 0.99563
1.19211 0.93376 0.91709 0.85073 0.97727 1.21176 1.32014 1.12256
0.90174 0.92072 1.24872 0.94889 0.94954 0.98984 1.69883 1.36690
1.22807 1.23144 0.86509 0.78682 0.79768 0.82885 1.19724 1.21084
1.20934 1.60790 1.46430 1.16470 1.06420 1.22782 0.90541 0.99436
0.92352 0.88042 1.25042 1.01313 0.94211 0.84567 1.87031 1.70239
1.44506 1.26087 1.23558 0.81322 0.76176 0.86177 1.90667 1.71238
1.59676 1.13024 1.23079 0.99442 1.02525 0.96612 0.92884 0.96705
0.93389 0.89406 0.97082 0.92850 0.84302 0.89934 0.87279 0.86144
0.87592
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.50 9.47 37.15 0.35 -2.15 16
2 C -0.10 -2.29 5.57 -26.74 -0.15 -2.44 16
3 C 0.21 4.67 2.16 -68.87 -0.15 4.52 16
4 H 0.01 0.12 7.64 -51.93 -0.40 -0.28 16
5 C -0.52 -12.68 7.38 -34.44 -0.25 -12.93 16
6 H 0.06 1.49 7.61 -52.48 -0.40 1.10 16
7 C 0.07 1.67 5.31 -17.82 -0.09 1.57 16
8 N -0.89 -23.52 11.34 55.43 0.63 -22.89 16
9 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16
10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16
11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16
12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
13 N -0.67 -11.90 5.19 -99.42 -0.52 -12.42 16
14 C 0.06 0.91 3.23 -66.25 -0.21 0.70 16
15 H 0.10 1.53 7.27 -51.93 -0.38 1.15 16
16 C 0.02 0.35 7.28 37.81 0.28 0.63 16
17 O -0.36 -5.67 11.07 -39.60 -0.44 -6.10 16
18 C 0.49 7.54 8.57 36.54 0.31 7.86 16
19 O -0.46 -8.36 18.00 -18.28 -0.33 -8.69 16
20 C -0.18 -2.36 6.74 -26.54 -0.18 -2.54 16
21 H 0.05 1.19 7.39 -51.93 -0.38 0.81 16
22 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16
23 H 0.05 0.94 7.47 -51.93 -0.39 0.56 16
24 H 0.09 2.19 6.10 -51.93 -0.32 1.87 16
25 H 0.01 0.22 7.47 -51.93 -0.39 -0.17 16
26 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16
27 H 0.34 5.90 7.82 -39.29 -0.31 5.59 16
28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16
29 H 0.11 1.59 7.72 -51.93 -0.40 1.19 16
30 H 0.12 1.53 8.03 -51.93 -0.42 1.11 16
31 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16
LS Contribution 259.42 15.07 3.91 3.91
Total: -1.00 -26.96 259.42 -6.04 -33.00
By element:
Atomic # 1 Polarization: 7.15 SS G_CDS: -4.18 Total: 2.98 kcal
Atomic # 6 Polarization: -4.69 SS G_CDS: -0.10 Total: -4.78 kcal
Atomic # 7 Polarization: -35.42 SS G_CDS: 0.11 Total: -35.31 kcal
Atomic # 8 Polarization: -14.03 SS G_CDS: -0.77 Total: -14.80 kcal
Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal
Total LS contribution 3.91 Total: 3.91 kcal
Total: -26.96 -6.04 -33.00 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255155413.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.192 kcal
(2) G-P(sol) polarization free energy of solvation -26.956 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.149 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.044 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.000 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.192 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds