Wall clock time and date at job start Sun Mar 29 2020 22:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47337 * 2 1 4 4 H 1.09001 * 109.47671 * 180.81986 * 3 2 1 5 5 C 1.50704 * 109.47249 * 300.81904 * 3 2 1 6 6 H 1.08003 * 119.99684 * 119.99815 * 5 3 2 7 7 C 1.37869 * 120.00090 * 299.72551 * 5 3 2 8 8 N 1.31514 * 119.99793 * 0.27540 * 7 5 3 9 9 Si 1.86799 * 120.00038 * 180.26904 * 7 5 3 10 10 H 1.48498 * 109.47319 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46851 * 120.00410 * 9 7 5 12 12 H 1.48504 * 109.47271 * 239.99939 * 9 7 5 13 13 N 1.46901 * 109.47131 * 60.82009 * 3 2 1 14 14 C 1.46902 * 111.00035 * 85.68154 * 13 3 2 15 15 H 1.09000 * 110.60905 * 320.78585 * 14 13 3 16 16 C 1.54253 * 110.69345 * 83.85516 * 14 13 3 17 17 O 1.45593 * 106.36968 * 117.33336 * 16 14 13 18 18 C 1.34526 * 109.63971 * 21.26057 * 17 16 14 19 19 O 1.20825 * 126.42570 * 147.15679 * 18 17 16 20 20 C 1.51782 * 107.14095 * 327.18013 * 18 17 16 21 21 H 1.09001 * 109.47559 * 65.18367 * 1 2 3 22 22 H 1.09000 * 109.47608 * 185.18342 * 1 2 3 23 23 H 1.09005 * 109.47358 * 305.18528 * 1 2 3 24 24 H 1.08994 * 109.47413 * 239.99805 * 2 1 3 25 25 H 1.09003 * 109.46965 * 120.00137 * 2 1 3 26 26 H 0.97006 * 119.99698 * 179.97438 * 8 7 5 27 27 H 1.00907 * 111.00063 * 209.62844 * 13 3 2 28 28 H 1.09003 * 110.07530 * 236.55749 * 16 14 13 29 29 H 1.08996 * 110.07994 * 358.04585 * 16 14 13 30 30 H 1.09004 * 110.61054 * 272.11563 * 20 18 17 31 31 H 1.08998 * 110.60956 * 149.13175 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1299 1.4425 -0.0147 5 6 1.5212 2.1587 -1.2202 6 1 0.9017 3.0364 -1.1085 7 6 1.8419 1.6970 -2.4791 8 7 2.5962 0.6283 -2.6150 9 14 1.2050 2.5893 -3.9915 10 1 0.3850 3.7536 -3.5707 11 1 2.3525 3.0615 -4.8074 12 1 0.3719 1.6624 -4.7989 13 7 1.5666 2.1292 1.2092 14 6 2.4743 1.8911 2.3394 15 1 2.8311 0.8611 2.3345 16 6 3.6589 2.8785 2.3045 17 8 3.5633 3.6772 3.5180 18 6 2.8271 3.0219 4.4337 19 8 2.9734 3.0599 5.6325 20 6 1.7788 2.2256 3.6783 21 1 -0.3634 0.4313 -0.9328 22 1 -0.3634 -1.0234 0.0928 23 1 -0.3634 0.5922 0.8399 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 2.8216 0.3032 -3.5007 27 1 1.4495 3.1173 1.0415 28 1 4.6017 2.3315 2.2899 29 1 3.5855 3.5201 1.4265 30 1 0.8876 2.8296 3.5073 31 1 1.5273 1.3129 4.2185 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155413.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:52 Heat of formation + Delta-G solvation = -102.719804 kcal Electronic energy + Delta-G solvation = -14578.759708 eV Core-core repulsion = 12052.440760 eV Total energy + Delta-G solvation = -2526.318947 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.93974 -38.91040 -37.75229 -34.92079 -33.03053 -30.91330 -28.74806 -27.58875 -25.09533 -22.81184 -22.30100 -20.73147 -18.65857 -17.99759 -17.78084 -17.23167 -16.84713 -15.77509 -15.37519 -15.25182 -14.69924 -14.55390 -13.92126 -13.84741 -13.46628 -12.95480 -12.83051 -12.54817 -12.47252 -12.30632 -11.95604 -11.72904 -11.62865 -11.33463 -11.19084 -10.74272 -10.51181 -9.05907 -8.07791 -6.18319 0.82402 1.42568 1.47677 1.55738 2.32409 2.44523 2.98919 3.22770 3.44543 3.56361 3.87070 4.15830 4.39567 4.57024 4.70337 4.86058 4.86494 4.89082 5.02057 5.36905 5.43628 5.60108 5.66878 5.75448 5.85277 5.94125 6.32141 6.32773 6.46725 6.76459 7.03336 7.50789 8.97041 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046066 B = 0.007837 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.676894 B = 3572.070725 C = 3849.426436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C 0.221 3.779 4 H -0.017 1.017 5 C -0.522 4.522 6 H 0.059 0.941 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.946 3.054 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.664 5.664 14 C 0.062 3.938 15 H 0.104 0.896 16 C 0.029 3.971 17 O -0.372 6.372 18 C 0.491 3.509 19 O -0.491 6.491 20 C -0.160 4.160 21 H 0.028 0.972 22 H 0.031 0.969 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.028 0.972 26 H 0.259 0.741 27 H 0.341 0.659 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.132 0.868 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 1.434 6.600 6.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.141 4.141 3 C 0.113 3.887 4 H 0.000 1.000 5 C -0.560 4.560 6 H 0.078 0.922 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.773 3.227 10 H -0.191 1.191 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.295 5.295 14 C -0.050 4.050 15 H 0.122 0.878 16 C -0.047 4.047 17 O -0.289 6.289 18 C 0.333 3.667 19 O -0.377 6.377 20 C -0.199 4.199 21 H 0.047 0.953 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.160 0.840 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.150 0.850 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.297 1.041 7.196 7.386 hybrid contribution 0.659 0.794 -1.443 1.774 sum -0.638 1.836 5.754 6.073 Atomic orbital electron populations 1.21333 0.96234 0.98442 1.00784 1.21361 0.96165 0.97800 0.98810 1.18957 0.91872 0.91945 0.85968 0.99968 1.21490 1.31234 1.12055 0.91238 0.92233 1.25507 0.95350 0.95612 1.01391 1.70001 1.37981 1.24024 1.23350 0.85685 0.78005 0.78834 0.80159 1.19134 1.21207 1.21248 1.60659 1.47014 1.16376 1.05488 1.22788 0.90541 0.99725 0.91941 0.87820 1.25009 1.01747 0.93933 0.83961 1.87025 1.70486 1.44973 1.26438 1.23822 0.81323 0.75741 0.85767 1.90658 1.71950 1.60803 1.14264 1.22991 0.98713 1.03154 0.95019 0.95266 0.95032 0.92201 0.92600 0.95376 0.93132 0.84001 0.88607 0.87657 0.84978 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.38 9.47 71.98 0.68 -3.70 16 2 C -0.10 -4.41 5.57 30.59 0.17 -4.24 16 3 C 0.22 9.45 2.16 44.17 0.10 9.55 16 4 H -0.02 -0.81 7.64 -2.39 -0.02 -0.83 16 5 C -0.52 -25.22 7.38 25.60 0.19 -25.03 16 6 H 0.06 2.85 7.61 -2.91 -0.02 2.82 16 7 C 0.02 1.06 5.31 84.65 0.45 1.51 16 8 N -0.91 -48.83 11.34 21.44 0.24 -48.59 16 9 Si 0.95 40.90 29.54 68.60 2.03 42.92 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 13 N -0.66 -22.28 5.19 -468.45 -2.43 -24.71 16 14 C 0.06 1.70 3.23 45.86 0.15 1.85 16 15 H 0.10 2.86 7.27 -2.39 -0.02 2.85 16 16 C 0.03 0.78 7.28 72.41 0.53 1.31 16 17 O -0.37 -11.02 11.07 -54.75 -0.61 -11.62 16 18 C 0.49 14.23 8.57 71.58 0.61 14.84 16 19 O -0.49 -17.04 18.00 21.52 0.39 -16.65 16 20 C -0.16 -3.78 6.74 30.72 0.21 -3.57 16 21 H 0.03 1.27 7.39 -2.39 -0.02 1.25 16 22 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.06 2.20 7.47 -2.38 -0.02 2.19 16 24 H 0.06 2.79 6.10 -2.39 -0.01 2.77 16 25 H 0.03 1.08 7.47 -2.39 -0.02 1.06 16 26 H 0.26 13.38 8.31 -92.70 -0.77 12.61 16 27 H 0.34 11.24 7.82 -89.69 -0.70 10.54 16 28 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.11 2.94 7.72 -2.39 -0.02 2.92 16 30 H 0.13 2.91 8.03 -2.38 -0.02 2.89 16 31 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -56.08 259.42 3.13 -52.95 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.43 Total: 13.19 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 3.08 Total: -7.49 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -2.19 Total: -73.30 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.22 Total: -28.28 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal Total: -56.08 3.13 -52.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155413.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.769 kcal (2) G-P(sol) polarization free energy of solvation -56.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds