Wall clock time and date at job start Sun Mar 29 2020 22:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46895 * 109.47363 * 65.00439 * 3 2 1 14 14 C 1.47011 * 111.00432 * 180.02562 * 13 3 2 15 15 C 1.53146 * 109.45238 * 174.69698 * 14 13 3 16 16 O 1.45682 * 108.92550 * 57.24498 * 15 14 13 17 17 C 1.35096 * 115.12034 * 309.11037 * 16 15 14 18 18 O 1.20818 * 121.09721 * 228.31278 * 17 16 15 19 19 C 1.47207 * 111.00159 * 56.41204 * 13 3 2 20 20 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 21 21 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 23 23 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 24 24 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 26 26 H 1.09000 * 109.47378 * 294.68905 * 14 13 3 27 27 H 1.09004 * 109.47290 * 54.69951 * 14 13 3 28 28 H 1.09003 * 109.56408 * 177.07578 * 15 14 13 29 29 H 1.09001 * 109.56416 * 297.41051 * 15 14 13 30 30 H 1.09003 * 109.63805 * 297.58252 * 19 13 3 31 31 H 1.08998 * 109.63791 * 58.19515 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 7 1.6515 2.0993 1.2552 14 6 2.1252 3.4905 1.2905 15 6 1.5903 4.1796 2.5492 16 8 2.0212 3.4266 3.7195 17 6 1.7650 2.1009 3.6747 18 8 1.2453 1.5339 4.6065 19 6 2.1503 1.3492 2.4195 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 3.8295 -0.0694 -2.9455 26 1 3.2151 3.5030 1.3048 27 1 1.7671 4.0188 0.4069 28 1 1.9825 5.1952 2.6041 29 1 0.5012 4.2086 2.5146 30 1 1.7019 0.3558 2.4348 31 1 3.2355 1.2636 2.3626 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178413.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:36 Heat of formation + Delta-G solvation = -79.196941 kcal Electronic energy + Delta-G solvation = -15038.905477 eV Core-core repulsion = 12513.606558 eV Total energy + Delta-G solvation = -2525.298919 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.13332 -37.35425 -36.33549 -32.95398 -31.48384 -29.58360 -27.61202 -25.29963 -23.57216 -22.23775 -19.88232 -19.23553 -17.03766 -16.68810 -16.31524 -15.22753 -14.87967 -14.69549 -14.05213 -13.69543 -13.04034 -12.92758 -12.35410 -11.97097 -11.67744 -11.59299 -11.27332 -11.15539 -10.98911 -10.73905 -10.33489 -10.14187 -9.86097 -9.76622 -9.46167 -9.17455 -8.51439 -7.53247 -6.15392 -4.30012 2.21024 3.18138 3.26333 3.28225 3.68242 4.27048 4.54874 4.81097 5.10696 5.23761 5.48114 5.54431 5.78336 6.14075 6.17997 6.27246 6.35005 6.41134 6.54580 6.89796 7.02994 7.07325 7.34607 7.40485 7.52973 7.61967 7.81188 7.91618 7.98159 8.21475 8.76641 9.38829 10.84581 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031075 B = 0.011103 C = 0.009615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.827062 B = 2521.247948 C = 2911.558462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.214 3.786 4 H 0.049 0.951 5 C -0.554 4.554 6 H 0.057 0.943 7 C 0.073 3.927 8 N -0.881 5.881 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.527 5.527 14 C 0.016 3.984 15 C 0.079 3.921 16 O -0.388 6.388 17 C 0.496 3.504 18 O -0.473 6.473 19 C 0.011 3.989 20 H 0.042 0.958 21 H 0.029 0.971 22 H 0.046 0.954 23 H 0.097 0.903 24 H 0.035 0.965 25 H 0.264 0.736 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 4.415 3.611 6.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C 0.108 3.892 4 H 0.067 0.933 5 C -0.593 4.593 6 H 0.075 0.925 7 C -0.131 4.131 8 N -0.518 5.518 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.253 5.253 14 C -0.113 4.113 15 C 0.005 3.995 16 O -0.308 6.308 17 C 0.337 3.663 18 O -0.354 6.354 19 C -0.118 4.118 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.115 0.885 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.935 4.145 4.052 6.497 hybrid contribution 2.010 -0.100 -0.442 2.060 sum -0.925 4.045 3.609 5.499 Atomic orbital electron populations 1.21734 0.98560 0.98855 1.00671 1.21696 0.92538 0.98875 1.02480 1.19402 0.93537 0.91392 0.84867 0.93349 1.21654 0.92427 1.39098 1.06123 0.92457 1.24887 0.98096 0.94621 0.95502 1.69860 1.35038 1.37479 1.09440 0.86638 0.85725 0.78542 0.77394 1.20559 1.21067 1.19955 1.63088 1.57554 1.00936 1.03763 1.22667 1.00142 0.91398 0.97100 1.23515 0.99796 0.94205 0.81957 1.86596 1.77335 1.21639 1.45232 1.23681 0.72359 0.81732 0.88499 1.90567 1.35137 1.68538 1.41169 1.22885 1.01930 0.98952 0.88070 0.93922 0.95228 0.93514 0.88453 0.94634 0.92622 0.92247 0.88897 0.87662 0.90983 0.87156 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.80 37.16 0.36 -2.35 16 2 C -0.12 -2.60 4.93 -26.73 -0.13 -2.73 16 3 C 0.21 4.80 1.82 -68.87 -0.13 4.68 16 4 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 5 C -0.55 -13.61 7.08 -34.44 -0.24 -13.85 16 6 H 0.06 1.41 5.81 -52.49 -0.31 1.10 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -23.25 11.28 55.43 0.63 -22.62 16 9 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.53 -10.20 4.21 -228.65 -0.96 -11.16 16 14 C 0.02 0.26 5.20 -3.69 -0.02 0.24 16 15 C 0.08 1.12 7.25 37.23 0.27 1.39 16 16 O -0.39 -6.85 10.66 -41.56 -0.44 -7.30 16 17 C 0.50 9.50 7.73 36.30 0.28 9.78 16 18 O -0.47 -10.06 17.95 -18.62 -0.33 -10.39 16 19 C 0.01 0.20 4.98 -4.51 -0.02 0.18 16 20 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.87 7.75 -51.93 -0.40 0.47 16 23 H 0.10 2.42 5.94 -51.93 -0.31 2.11 16 24 H 0.03 0.77 6.12 -51.93 -0.32 0.45 16 25 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 26 H 0.06 1.08 6.66 -51.93 -0.35 0.74 16 27 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 28 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.11 2.13 6.29 -51.93 -0.33 1.80 16 31 H 0.09 1.69 6.66 -51.93 -0.35 1.34 16 LS Contribution 251.44 15.07 3.79 3.79 Total: -1.00 -27.26 251.44 -6.09 -33.35 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.02 Total: 0.27 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 0.28 Total: -0.90 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: -0.34 Total: -33.78 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.78 Total: -17.69 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.26 -6.09 -33.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178413.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.842 kcal (2) G-P(sol) polarization free energy of solvation -27.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds