Wall clock time and date at job start Sun Mar 29 2020 22:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46991 * 2 1 4 4 H 1.09001 * 109.47408 * 302.43163 * 3 2 1 5 5 C 1.50707 * 109.47246 * 62.43487 * 3 2 1 6 6 H 1.08005 * 119.99970 * 84.81957 * 5 3 2 7 7 C 1.37873 * 119.99847 * 264.82712 * 5 3 2 8 8 N 1.31515 * 120.00221 * 357.07578 * 7 5 3 9 9 Si 1.86797 * 119.99912 * 177.08605 * 7 5 3 10 10 H 1.48499 * 109.47539 * 59.99440 * 9 7 5 11 11 H 1.48494 * 109.47339 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47220 * 299.99621 * 9 7 5 13 13 N 1.46903 * 109.46999 * 182.43485 * 3 2 1 14 14 C 1.47014 * 110.99813 * 306.70391 * 13 3 2 15 15 C 1.53146 * 109.45249 * 185.30207 * 14 13 3 16 16 O 1.45683 * 108.92613 * 302.75763 * 15 14 13 17 17 C 1.35100 * 115.11709 * 50.88308 * 16 15 14 18 18 O 1.20833 * 121.09219 * 131.68997 * 17 16 15 19 19 C 1.47198 * 111.00165 * 70.29160 * 13 3 2 20 20 H 1.08999 * 109.47665 * 178.26775 * 1 2 3 21 21 H 1.08999 * 109.47551 * 58.27005 * 1 2 3 22 22 H 1.09004 * 109.47431 * 298.27144 * 1 2 3 23 23 H 1.09004 * 109.47068 * 120.00085 * 2 1 3 24 24 H 1.08996 * 109.46993 * 240.00225 * 2 1 3 25 25 H 0.97004 * 120.00137 * 179.97438 * 8 7 5 26 26 H 1.09000 * 109.47966 * 305.29977 * 14 13 3 27 27 H 1.09007 * 109.47525 * 65.30757 * 14 13 3 28 28 H 1.08995 * 109.56504 * 182.92751 * 15 14 13 29 29 H 1.08999 * 109.56329 * 62.59076 * 15 14 13 30 30 H 1.08996 * 109.63424 * 301.80748 * 19 13 3 31 31 H 1.09003 * 109.64035 * 62.42109 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6414 1.9688 -0.8674 5 6 1.5875 2.1353 1.2596 6 1 2.1651 2.0376 2.1670 7 6 0.4361 2.8937 1.2536 8 7 -0.2362 3.0598 0.1355 9 14 -0.1689 3.6856 2.8336 10 1 0.8689 4.6129 3.3515 11 1 -1.4171 4.4426 2.5615 12 1 -0.4391 2.6313 3.8438 13 7 3.5078 1.4429 -0.0588 14 6 4.0780 0.6072 1.0078 15 6 5.6039 0.7373 0.9970 16 8 6.1011 0.3574 -0.3186 17 6 5.4955 0.9699 -1.3594 18 8 6.1406 1.4782 -2.2457 19 6 3.9830 0.9980 -1.3791 20 1 -0.3634 -1.0272 -0.0311 21 1 -0.3634 0.5404 -0.8740 22 1 -0.3634 0.4868 0.9051 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 -1.0464 3.5931 0.1314 26 1 3.6921 0.9361 1.9727 27 1 3.8008 -0.4338 0.8413 28 1 6.0317 0.0788 1.7529 29 1 5.8837 1.7692 1.2089 30 1 3.6007 -0.0011 -1.5883 31 1 3.6394 1.6929 -2.1454 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178414.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:38 Heat of formation + Delta-G solvation = -77.763827 kcal Electronic energy + Delta-G solvation = -14941.502210 eV Core-core repulsion = 12416.265435 eV Total energy + Delta-G solvation = -2525.236775 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.20015 -37.48736 -36.34047 -33.11424 -31.16514 -29.88335 -27.59284 -24.99590 -23.67836 -22.59098 -20.30839 -18.91487 -17.21060 -16.56309 -16.17801 -15.34175 -14.69503 -14.55928 -14.28263 -13.82685 -13.57723 -12.91111 -12.41342 -12.18360 -11.70079 -11.35409 -11.26162 -11.01993 -10.90640 -10.64033 -10.42859 -10.31312 -10.01992 -9.83984 -9.32459 -9.06506 -8.54615 -7.49989 -6.14372 -4.17368 2.13134 3.24551 3.30610 3.32415 3.61957 4.27660 4.49664 4.71622 5.17419 5.23358 5.44063 5.51346 5.60249 5.88218 6.09425 6.15809 6.21194 6.28390 6.48383 6.80129 6.99734 7.04596 7.22441 7.30137 7.50507 7.65211 7.73163 7.85983 8.01883 8.33221 8.87593 9.45711 10.93931 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038444 B = 0.009517 C = 0.008948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.166419 B = 2941.421863 C = 3128.523837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.141 4.141 3 C 0.200 3.800 4 H 0.077 0.923 5 C -0.500 4.500 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.519 5.519 14 C 0.011 3.989 15 C 0.078 3.922 16 O -0.388 6.388 17 C 0.499 3.501 18 O -0.469 6.469 19 C 0.002 3.998 20 H 0.015 0.985 21 H 0.053 0.947 22 H 0.065 0.935 23 H 0.043 0.957 24 H 0.022 0.978 25 H 0.263 0.737 26 H 0.107 0.893 27 H 0.044 0.956 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 -5.258 1.963 7.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.181 4.181 3 C 0.095 3.905 4 H 0.095 0.905 5 C -0.539 4.539 6 H 0.076 0.924 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.245 5.245 14 C -0.117 4.117 15 C 0.004 3.996 16 O -0.308 6.308 17 C 0.340 3.660 18 O -0.350 6.350 19 C -0.127 4.127 20 H 0.034 0.966 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.125 0.875 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.992 -4.540 1.498 6.912 hybrid contribution -0.867 -0.373 0.776 1.222 sum 4.125 -4.912 2.274 6.806 Atomic orbital electron populations 1.21412 0.95331 0.97284 1.03640 1.22230 0.97562 1.00567 0.97692 1.19733 0.78798 0.91411 1.00547 0.90544 1.20815 1.07806 1.30407 0.94867 0.92446 1.24890 0.96859 0.95381 0.96167 1.69903 1.17201 1.39565 1.25595 0.86646 0.78190 0.79518 0.83585 1.20168 1.21290 1.20263 1.63253 1.13586 1.49331 0.98367 1.22807 0.92673 0.96792 0.99445 1.23554 0.94762 1.01610 0.79655 1.86601 1.63661 1.63580 1.16967 1.23456 0.90395 0.71640 0.80533 1.90583 1.70140 1.36293 1.37968 1.22993 0.90316 1.02268 0.97133 0.96601 0.92772 0.91580 0.93822 0.95943 0.92670 0.87459 0.93785 0.87621 0.90538 0.91249 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 8.84 37.16 0.33 -2.16 16 2 C -0.14 -2.86 4.62 -26.73 -0.12 -2.98 16 3 C 0.20 4.50 1.97 -68.86 -0.14 4.36 16 4 H 0.08 1.96 7.19 -51.93 -0.37 1.59 16 5 C -0.50 -12.31 7.50 -34.44 -0.26 -12.57 16 6 H 0.06 1.39 6.35 -52.48 -0.33 1.06 16 7 C 0.07 1.78 4.30 -17.82 -0.08 1.71 16 8 N -0.89 -23.38 11.92 55.43 0.66 -22.72 16 9 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.52 -10.31 4.67 -228.66 -1.07 -11.37 16 14 C 0.01 0.19 4.69 -3.69 -0.02 0.17 16 15 C 0.08 1.12 7.25 37.23 0.27 1.39 16 16 O -0.39 -6.67 10.67 -41.57 -0.44 -7.11 16 17 C 0.50 9.30 7.73 36.30 0.28 9.59 16 18 O -0.47 -9.83 17.95 -18.63 -0.33 -10.17 16 19 C 0.00 0.04 5.57 -4.52 -0.03 0.01 16 20 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 21 H 0.05 1.20 8.05 -51.93 -0.42 0.78 16 22 H 0.07 1.52 6.54 -51.93 -0.34 1.18 16 23 H 0.04 0.85 6.59 -51.93 -0.34 0.51 16 24 H 0.02 0.42 6.57 -51.93 -0.34 0.08 16 25 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 26 H 0.11 1.83 6.36 -51.93 -0.33 1.50 16 27 H 0.04 0.71 6.60 -51.93 -0.34 0.37 16 28 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.17 6.53 -51.93 -0.34 0.84 16 31 H 0.11 2.00 8.14 -51.93 -0.42 1.57 16 LS Contribution 250.20 15.07 3.77 3.77 Total: -1.00 -27.42 250.20 -6.18 -33.60 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -3.99 Total: -0.46 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 0.24 Total: -0.49 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: -0.41 Total: -34.09 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.78 Total: -17.28 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.42 -6.18 -33.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178414.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.161 kcal (2) G-P(sol) polarization free energy of solvation -27.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds