Wall clock time and date at job start Sun Mar 29 2020 22:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46991 * 2 1 4 4 H 1.09001 * 109.47408 * 302.43163 * 3 2 1 5 5 C 1.50707 * 109.47246 * 62.43487 * 3 2 1 6 6 H 1.08005 * 119.99970 * 84.81957 * 5 3 2 7 7 C 1.37873 * 119.99847 * 264.82712 * 5 3 2 8 8 N 1.31515 * 120.00221 * 357.07578 * 7 5 3 9 9 Si 1.86797 * 119.99912 * 177.08605 * 7 5 3 10 10 H 1.48499 * 109.47539 * 59.99440 * 9 7 5 11 11 H 1.48494 * 109.47339 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47220 * 299.99621 * 9 7 5 13 13 N 1.46903 * 109.46999 * 182.43485 * 3 2 1 14 14 C 1.47014 * 110.99813 * 306.70391 * 13 3 2 15 15 C 1.53146 * 109.45249 * 185.30207 * 14 13 3 16 16 O 1.45683 * 108.92613 * 302.75763 * 15 14 13 17 17 C 1.35100 * 115.11709 * 50.88308 * 16 15 14 18 18 O 1.20833 * 121.09219 * 131.68997 * 17 16 15 19 19 C 1.47198 * 111.00165 * 70.29160 * 13 3 2 20 20 H 1.08999 * 109.47665 * 178.26775 * 1 2 3 21 21 H 1.08999 * 109.47551 * 58.27005 * 1 2 3 22 22 H 1.09004 * 109.47431 * 298.27144 * 1 2 3 23 23 H 1.09004 * 109.47068 * 120.00085 * 2 1 3 24 24 H 1.08996 * 109.46993 * 240.00225 * 2 1 3 25 25 H 0.97004 * 120.00137 * 179.97438 * 8 7 5 26 26 H 1.09000 * 109.47966 * 305.29977 * 14 13 3 27 27 H 1.09007 * 109.47525 * 65.30757 * 14 13 3 28 28 H 1.08995 * 109.56504 * 182.92751 * 15 14 13 29 29 H 1.08999 * 109.56329 * 62.59076 * 15 14 13 30 30 H 1.08996 * 109.63424 * 301.80748 * 19 13 3 31 31 H 1.09003 * 109.64035 * 62.42109 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6414 1.9688 -0.8674 5 6 1.5875 2.1353 1.2596 6 1 2.1651 2.0376 2.1670 7 6 0.4361 2.8937 1.2536 8 7 -0.2362 3.0598 0.1355 9 14 -0.1689 3.6856 2.8336 10 1 0.8689 4.6129 3.3515 11 1 -1.4171 4.4426 2.5615 12 1 -0.4391 2.6313 3.8438 13 7 3.5078 1.4429 -0.0588 14 6 4.0780 0.6072 1.0078 15 6 5.6039 0.7373 0.9970 16 8 6.1011 0.3574 -0.3186 17 6 5.4955 0.9699 -1.3594 18 8 6.1406 1.4782 -2.2457 19 6 3.9830 0.9980 -1.3791 20 1 -0.3634 -1.0272 -0.0311 21 1 -0.3634 0.5404 -0.8740 22 1 -0.3634 0.4868 0.9051 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 -1.0464 3.5931 0.1314 26 1 3.6921 0.9361 1.9727 27 1 3.8008 -0.4338 0.8413 28 1 6.0317 0.0788 1.7529 29 1 5.8837 1.7692 1.2089 30 1 3.6007 -0.0011 -1.5883 31 1 3.6394 1.6929 -2.1454 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178414.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:38 Heat of formation + Delta-G solvation = -95.497204 kcal Electronic energy + Delta-G solvation = -14942.271187 eV Core-core repulsion = 12416.265435 eV Total energy + Delta-G solvation = -2526.005752 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.64613 -39.05722 -37.83516 -34.85760 -32.90459 -31.23320 -29.26775 -26.71811 -25.12159 -24.20093 -21.89984 -20.43567 -18.77792 -18.08010 -17.82940 -16.78222 -16.44274 -16.02097 -15.74991 -15.42750 -15.21382 -14.41089 -14.11152 -13.64879 -13.27701 -12.92704 -12.83725 -12.73252 -12.66432 -12.22901 -12.15153 -11.75031 -11.62972 -11.51397 -10.96137 -10.78298 -10.45439 -9.03571 -8.06258 -6.13248 0.68665 1.47088 1.49303 1.54437 2.23758 2.46066 2.93211 3.28239 3.45379 3.89759 4.07802 4.27603 4.34763 4.51732 4.53410 4.58543 4.78964 4.86649 4.91742 5.16953 5.27741 5.39476 5.61030 5.70718 5.83503 5.92377 6.06848 6.25208 6.39146 6.56808 6.97220 7.52217 9.01240 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038444 B = 0.009517 C = 0.008948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.166419 B = 2941.421863 C = 3128.523837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.134 4.134 3 C 0.206 3.794 4 H 0.037 0.963 5 C -0.505 4.505 6 H 0.061 0.939 7 C 0.027 3.973 8 N -0.914 5.914 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.292 1.292 12 H -0.269 1.269 13 N -0.538 5.538 14 C 0.011 3.989 15 C 0.081 3.919 16 O -0.389 6.389 17 C 0.507 3.493 18 O -0.498 6.498 19 C 0.009 3.991 20 H 0.043 0.957 21 H 0.032 0.968 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.039 0.961 25 H 0.259 0.741 26 H 0.104 0.896 27 H 0.055 0.945 28 H 0.151 0.849 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.371 -6.462 3.218 8.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.173 4.173 3 C 0.100 3.900 4 H 0.055 0.945 5 C -0.544 4.544 6 H 0.079 0.921 7 C -0.174 4.174 8 N -0.553 5.553 9 Si 0.772 3.228 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.194 1.194 13 N -0.264 5.264 14 C -0.117 4.117 15 C 0.008 3.992 16 O -0.309 6.309 17 C 0.349 3.651 18 O -0.381 6.381 19 C -0.120 4.120 20 H 0.062 0.938 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.122 0.878 27 H 0.073 0.927 28 H 0.169 0.831 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.850 -5.760 2.780 8.667 hybrid contribution -1.087 -0.030 0.404 1.160 sum 4.762 -5.789 3.183 8.144 Atomic orbital electron populations 1.21305 0.95903 0.98339 1.01373 1.22104 0.96935 0.99274 0.99017 1.19460 0.80414 0.92135 0.98001 0.94475 1.21132 1.07531 1.29979 0.95741 0.92135 1.25509 0.97315 0.96212 0.98321 1.70033 1.17523 1.40591 1.27149 0.85812 0.77329 0.78753 0.80895 1.20154 1.21843 1.19415 1.63038 1.12168 1.51243 0.99956 1.22878 0.94114 0.96668 0.98024 1.23824 0.93174 1.03069 0.79103 1.86610 1.63641 1.63078 1.17552 1.23420 0.90250 0.70907 0.80508 1.90576 1.70544 1.37818 1.39138 1.22908 0.90139 1.02842 0.96158 0.93793 0.94898 0.93954 0.92534 0.94278 0.93160 0.87760 0.92732 0.83135 0.90459 0.89590 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 8.84 71.98 0.64 -3.92 16 2 C -0.13 -5.20 4.62 30.59 0.14 -5.06 16 3 C 0.21 9.16 1.97 44.17 0.09 9.24 16 4 H 0.04 1.95 7.19 -2.39 -0.02 1.93 16 5 C -0.51 -24.58 7.50 25.60 0.19 -24.39 16 6 H 0.06 2.85 6.35 -2.91 -0.02 2.83 16 7 C 0.03 1.35 4.30 84.65 0.36 1.71 16 8 N -0.91 -49.17 11.92 21.45 0.26 -48.92 16 9 Si 0.95 40.81 29.54 68.60 2.03 42.84 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 13 N -0.54 -20.65 4.67 -877.34 -4.10 -24.75 16 14 C 0.01 0.33 4.69 86.33 0.40 0.74 16 15 C 0.08 2.04 7.25 72.03 0.52 2.56 16 16 O -0.39 -12.28 10.67 -60.26 -0.64 -12.93 16 17 C 0.51 18.13 7.73 71.42 0.55 18.69 16 18 O -0.50 -20.49 17.95 21.82 0.39 -20.10 16 19 C 0.01 0.30 5.57 85.69 0.48 0.78 16 20 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.03 1.45 8.05 -2.39 -0.02 1.43 16 22 H 0.04 1.91 6.54 -2.38 -0.02 1.90 16 23 H 0.06 2.05 6.59 -2.38 -0.02 2.04 16 24 H 0.04 1.38 6.57 -2.39 -0.02 1.36 16 25 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 26 H 0.10 3.28 6.36 -2.39 -0.02 3.26 16 27 H 0.05 1.57 6.60 -2.38 -0.02 1.55 16 28 H 0.15 2.50 8.14 -2.39 -0.02 2.49 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.09 2.73 6.53 -2.39 -0.02 2.71 16 31 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 Total: -1.00 -58.17 250.20 2.44 -55.73 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.12 Total: 7.77 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 3.38 Total: 0.34 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -3.84 Total: -73.67 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.25 Total: -33.02 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -58.17 2.44 -55.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178414.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.763 kcal (2) G-P(sol) polarization free energy of solvation -58.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds