Wall clock time and date at job start Sun Mar 29 2020 21:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99816 * 2 1 4 4 H 1.48500 * 109.46914 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47411 * 300.00673 * 3 2 1 6 6 H 1.48497 * 109.46850 * 60.00624 * 3 2 1 7 7 C 1.37874 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00365 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.53515 * 114.17176 * 179.97438 * 9 7 2 11 11 N 1.47483 * 87.93442 * 139.86002 * 10 9 7 12 12 C 1.46903 * 111.00077 * 221.30251 * 11 10 9 13 13 H 1.08996 * 109.96338 * 54.79523 * 12 11 10 14 14 C 1.53863 * 109.97206 * 176.07870 * 12 11 10 15 15 C 1.54276 * 108.92287 * 166.61374 * 14 12 11 16 16 S 1.83100 * 104.64924 * 332.04623 * 15 14 12 17 17 C 1.55137 * 109.97194 * 293.54182 * 12 11 10 18 18 C 1.47482 * 87.83307 * 332.99217 * 11 10 9 19 19 H 0.96996 * 120.00030 * 359.97438 * 1 2 3 20 20 H 1.09003 * 113.25803 * 47.04812 * 9 7 2 21 21 H 1.09002 * 113.47437 * 25.09953 * 10 9 7 22 22 H 1.08995 * 113.47965 * 254.62397 * 10 9 7 23 23 H 1.09003 * 109.60794 * 46.69331 * 14 12 11 24 24 H 1.09003 * 109.60738 * 286.53611 * 14 12 11 25 25 H 1.08993 * 110.39713 * 213.25637 * 15 14 12 26 26 H 1.08998 * 110.40150 * 90.84024 * 15 14 12 27 27 H 1.08999 * 110.85284 * 80.34916 * 17 12 11 28 28 H 1.08994 * 111.03213 * 316.78193 * 17 12 11 29 29 H 1.09008 * 113.47622 * 141.77627 * 18 11 10 30 30 H 1.09000 * 113.47900 * 272.24272 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.1498 -3.7437 -0.0018 11 7 1.2059 -4.3606 0.9488 12 6 1.9223 -5.0910 2.0030 13 1 2.6374 -4.4304 2.4932 14 6 0.9216 -5.6413 3.0341 15 6 1.6410 -6.6720 3.9287 16 16 2.9720 -7.3534 2.8720 17 6 2.6600 -6.3123 1.3940 18 6 0.8530 -2.9999 1.3949 19 1 -0.4850 0.8400 0.0004 20 1 0.4447 -2.5305 -0.7332 21 1 3.1383 -3.5660 0.4216 22 1 2.1883 -4.2506 -0.9660 23 1 0.0910 -6.1220 2.5172 24 1 0.5431 -4.8244 3.6486 25 1 0.9519 -7.4615 4.2283 26 1 2.0649 -6.1834 4.8060 27 1 3.5975 -6.0072 0.9293 28 1 2.0259 -6.8350 0.6780 29 1 -0.2076 -2.8762 1.6143 30 1 1.4954 -2.6235 2.1909 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255280030.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:32 Heat of formation + Delta-G solvation = 26.449875 kcal Electronic energy + Delta-G solvation = -12367.330975 eV Core-core repulsion = 10289.366116 eV Total energy + Delta-G solvation = -2077.964859 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.33019 -35.13659 -32.50876 -29.74870 -27.47588 -25.25932 -24.25550 -22.93867 -20.08453 -18.77884 -16.87479 -16.25016 -15.73229 -14.69916 -14.44816 -14.28319 -13.58695 -13.24871 -12.62160 -12.47132 -11.91969 -11.83281 -11.48530 -11.14873 -11.11622 -10.86527 -10.60866 -10.46217 -10.02399 -9.73100 -9.21626 -9.01081 -8.50058 -8.13526 -7.65628 -6.11287 -4.16110 1.89982 2.42539 3.24281 3.32959 3.36426 4.34683 4.57120 4.70344 4.93699 5.09208 5.19369 5.29046 5.39549 5.62111 5.73252 5.79897 5.92224 5.98822 6.22570 6.30869 6.39519 6.59469 6.62684 7.02559 7.04427 7.66389 7.83225 7.96082 8.30411 8.87712 9.49598 10.98334 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.063070 B = 0.006735 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.846898 B = 4156.626247 C = 4229.257003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.042 3.958 10 C -0.005 4.005 11 N -0.475 5.475 12 C 0.045 3.955 13 H 0.059 0.941 14 C -0.119 4.119 15 C -0.066 4.066 16 S -0.312 6.312 17 C -0.054 4.054 18 C 0.005 3.995 19 H 0.262 0.738 20 H 0.065 0.935 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 -9.529 5.183 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.023 3.977 10 C -0.134 4.134 11 N -0.198 5.198 12 C -0.066 4.066 13 H 0.077 0.923 14 C -0.158 4.158 15 C -0.215 4.215 16 S -0.087 6.087 17 C -0.203 4.203 18 C -0.124 4.124 19 H 0.071 0.929 20 H 0.083 0.917 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.650 -10.765 5.192 12.242 hybrid contribution 0.270 2.242 0.302 2.278 sum 2.920 -8.523 5.495 10.553 Atomic orbital electron populations 1.69973 1.06013 1.26738 1.49604 1.25022 0.94825 0.99229 0.94513 0.86556 0.80195 0.83690 0.77704 1.19688 1.20839 1.20957 1.21066 0.92811 0.90211 1.51452 0.92332 1.20098 0.94280 0.90869 0.92411 1.24013 0.95801 0.97666 0.95906 1.69001 1.26868 1.14303 1.09640 1.23264 0.94622 0.95254 0.93482 0.92261 1.22196 0.99074 0.98177 0.96344 1.23926 0.97320 1.00740 0.99501 1.87380 1.48098 1.56271 1.16939 1.24253 1.03554 0.96313 0.96133 1.24074 1.00304 0.86349 1.01631 0.92854 0.91702 0.92673 0.91802 0.89913 0.90050 0.88819 0.89209 0.88378 0.88474 0.91591 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 13.26 55.43 0.74 -24.38 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -13.79 8.83 -34.44 -0.30 -14.09 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.04 1.03 3.76 -91.24 -0.34 0.69 16 10 C -0.01 -0.11 6.67 -7.55 -0.05 -0.16 16 11 N -0.47 -9.10 6.16 -234.68 -1.45 -10.54 16 12 C 0.04 0.72 1.91 -66.13 -0.13 0.60 16 13 H 0.06 1.03 7.60 -51.93 -0.39 0.63 16 14 C -0.12 -1.66 5.81 -25.61 -0.15 -1.81 16 15 C -0.07 -0.81 7.34 37.83 0.28 -0.53 16 16 S -0.31 -4.42 23.26 -107.50 -2.50 -6.92 16 17 C -0.05 -0.80 6.39 38.29 0.24 -0.55 16 18 C 0.01 0.12 7.08 -7.55 -0.05 0.06 16 19 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 20 H 0.06 1.74 8.11 -51.93 -0.42 1.31 16 21 H 0.06 1.10 7.81 -51.93 -0.41 0.70 16 22 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 24 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.10 1.41 8.12 -51.93 -0.42 0.98 16 28 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.07 1.50 8.14 -51.92 -0.42 1.08 16 30 H 0.05 1.20 7.59 -51.93 -0.39 0.80 16 LS Contribution 259.14 15.07 3.91 3.91 Total: -1.00 -27.24 259.14 -9.47 -36.71 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.54 Total: -0.40 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -0.60 Total: -14.07 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: -0.71 Total: -34.93 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -2.50 Total: -6.92 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.24 -9.47 -36.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255280030.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.158 kcal (2) G-P(sol) polarization free energy of solvation -27.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds