Wall clock time and date at job start Sun Mar 29 2020 21:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99816 * 2 1 4 4 H 1.48500 * 109.46914 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47411 * 300.00673 * 3 2 1 6 6 H 1.48497 * 109.46850 * 60.00624 * 3 2 1 7 7 C 1.37874 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00365 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.53515 * 114.17176 * 179.97438 * 9 7 2 11 11 N 1.47483 * 87.93442 * 139.86002 * 10 9 7 12 12 C 1.46903 * 111.00077 * 221.30251 * 11 10 9 13 13 H 1.08996 * 109.96338 * 54.79523 * 12 11 10 14 14 C 1.53863 * 109.97206 * 176.07870 * 12 11 10 15 15 C 1.54276 * 108.92287 * 166.61374 * 14 12 11 16 16 S 1.83100 * 104.64924 * 332.04623 * 15 14 12 17 17 C 1.55137 * 109.97194 * 293.54182 * 12 11 10 18 18 C 1.47482 * 87.83307 * 332.99217 * 11 10 9 19 19 H 0.96996 * 120.00030 * 359.97438 * 1 2 3 20 20 H 1.09003 * 113.25803 * 47.04812 * 9 7 2 21 21 H 1.09002 * 113.47437 * 25.09953 * 10 9 7 22 22 H 1.08995 * 113.47965 * 254.62397 * 10 9 7 23 23 H 1.09003 * 109.60794 * 46.69331 * 14 12 11 24 24 H 1.09003 * 109.60738 * 286.53611 * 14 12 11 25 25 H 1.08993 * 110.39713 * 213.25637 * 15 14 12 26 26 H 1.08998 * 110.40150 * 90.84024 * 15 14 12 27 27 H 1.08999 * 110.85284 * 80.34916 * 17 12 11 28 28 H 1.08994 * 111.03213 * 316.78193 * 17 12 11 29 29 H 1.09008 * 113.47622 * 141.77627 * 18 11 10 30 30 H 1.09000 * 113.47900 * 272.24272 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.1498 -3.7437 -0.0018 11 7 1.2059 -4.3606 0.9488 12 6 1.9223 -5.0910 2.0030 13 1 2.6374 -4.4304 2.4932 14 6 0.9216 -5.6413 3.0341 15 6 1.6410 -6.6720 3.9287 16 16 2.9720 -7.3534 2.8720 17 6 2.6600 -6.3123 1.3940 18 6 0.8530 -2.9999 1.3949 19 1 -0.4850 0.8400 0.0004 20 1 0.4447 -2.5305 -0.7332 21 1 3.1383 -3.5660 0.4216 22 1 2.1883 -4.2506 -0.9660 23 1 0.0910 -6.1220 2.5172 24 1 0.5431 -4.8244 3.6486 25 1 0.9519 -7.4615 4.2283 26 1 2.0649 -6.1834 4.8060 27 1 3.5975 -6.0072 0.9293 28 1 2.0259 -6.8350 0.6780 29 1 -0.2076 -2.8762 1.6143 30 1 1.4954 -2.6235 2.1909 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255280030.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:32 Heat of formation + Delta-G solvation = 9.413528 kcal Electronic energy + Delta-G solvation = -12368.069726 eV Core-core repulsion = 10289.366116 eV Total energy + Delta-G solvation = -2078.703610 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.95594 -36.49433 -34.47777 -31.05173 -29.14601 -26.90024 -25.97607 -24.33297 -21.44821 -20.56028 -18.66927 -17.60326 -17.13208 -16.49471 -15.98660 -15.80039 -14.89883 -14.70145 -14.16044 -13.77469 -13.46617 -13.23296 -13.04441 -12.90747 -12.78520 -12.37680 -12.24401 -11.91424 -11.57586 -11.25769 -10.99016 -10.81263 -10.50947 -9.78522 -8.75475 -8.17250 -6.28494 0.80437 1.33140 1.40813 1.43335 1.54356 2.41246 3.12150 3.16919 3.46234 3.78911 3.97378 4.07682 4.17049 4.23693 4.40551 4.51521 4.58989 4.67601 4.74095 4.82628 4.91399 4.93682 5.08096 5.21071 5.38101 5.61286 5.83404 6.26683 6.31151 6.81380 7.40563 8.92706 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.063070 B = 0.006735 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.846898 B = 4156.626247 C = 4229.257003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.021 3.979 10 C 0.011 3.989 11 N -0.469 5.469 12 C 0.042 3.958 13 H 0.051 0.949 14 C -0.116 4.116 15 C -0.055 4.055 16 S -0.324 6.324 17 C -0.049 4.049 18 C 0.019 3.981 19 H 0.263 0.737 20 H 0.032 0.968 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 -10.156 6.030 12.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.002 3.998 10 C -0.118 4.118 11 N -0.192 5.192 12 C -0.069 4.069 13 H 0.069 0.931 14 C -0.155 4.155 15 C -0.203 4.203 16 S -0.099 6.099 17 C -0.197 4.197 18 C -0.110 4.110 19 H 0.072 0.928 20 H 0.050 0.950 21 H 0.079 0.921 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.101 0.899 25 H 0.134 0.866 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.541 -11.410 6.042 13.387 hybrid contribution -0.014 2.380 0.045 2.380 sum 3.526 -9.030 6.087 11.447 Atomic orbital electron populations 1.70089 1.07485 1.27583 1.50845 1.25805 0.95590 1.02647 0.94284 0.85536 0.79159 0.79485 0.77677 1.18891 1.20553 1.20586 1.21397 0.93003 0.91469 1.51017 0.92326 1.20052 0.94557 0.92057 0.93145 1.23820 0.95360 0.95658 0.96967 1.68924 1.27178 1.12781 1.10277 1.23330 0.94982 0.95398 0.93164 0.93074 1.22151 0.98551 0.98688 0.96062 1.23987 0.96712 1.00713 0.98920 1.87471 1.49231 1.56207 1.17022 1.24148 1.03487 0.95607 0.96494 1.23772 0.99295 0.87978 1.00000 0.92792 0.94971 0.92128 0.90519 0.90050 0.89907 0.86620 0.87816 0.88060 0.88371 0.92996 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.11 13.26 21.45 0.28 -52.82 16 2 C 0.02 0.88 5.46 84.65 0.46 1.35 16 3 Si 0.96 42.51 29.54 68.60 2.03 44.54 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.53 -28.47 8.83 25.60 0.23 -28.24 16 8 H 0.06 3.07 7.81 -2.91 -0.02 3.04 16 9 C 0.02 1.04 3.76 -11.20 -0.04 1.00 16 10 C 0.01 0.42 6.67 83.57 0.56 0.98 16 11 N -0.47 -17.59 6.16 -896.40 -5.52 -23.12 16 12 C 0.04 1.29 1.91 45.94 0.09 1.38 16 13 H 0.05 1.69 7.60 -2.39 -0.02 1.67 16 14 C -0.12 -2.99 5.81 31.32 0.18 -2.81 16 15 C -0.06 -1.18 7.34 72.41 0.53 -0.64 16 16 S -0.32 -8.41 23.26 -56.49 -1.31 -9.72 16 17 C -0.05 -1.35 6.39 72.71 0.46 -0.88 16 18 C 0.02 0.84 7.08 83.57 0.59 1.43 16 19 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 20 H 0.03 1.78 8.11 -2.39 -0.02 1.76 16 21 H 0.06 2.35 7.81 -2.39 -0.02 2.33 16 22 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 23 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.10 2.71 8.12 -2.39 -0.02 2.69 16 28 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.05 2.25 7.59 -2.39 -0.02 2.23 16 Total: -1.00 -57.52 259.14 -0.37 -57.89 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.10 Total: 9.68 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 3.06 Total: -26.44 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -5.24 Total: -75.94 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.31 Total: -9.72 kcal Total: -57.52 -0.37 -57.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255280030.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.299 kcal (2) G-P(sol) polarization free energy of solvation -57.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds