Wall clock time and date at job start Sun Mar 29 2020 21:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00245 * 2 1 4 4 H 1.48499 * 109.46985 * 269.99442 * 3 2 1 5 5 H 1.48504 * 109.47094 * 29.99709 * 3 2 1 6 6 H 1.48501 * 109.47157 * 149.99534 * 3 2 1 7 7 C 1.37875 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00059 * 0.02562 * 7 2 1 10 10 S 1.81407 * 109.46934 * 179.97438 * 9 7 2 11 11 C 1.81402 * 102.99847 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47046 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47084 * 179.97438 * 12 11 10 14 14 C 1.34429 * 126.81895 * 124.99739 * 13 12 11 15 15 N 1.30837 * 108.07952 * 180.02562 * 14 13 12 16 16 C 1.33246 * 109.82318 * 359.97438 * 15 14 13 17 17 N 1.30712 * 108.94935 * 0.27015 * 16 15 14 18 18 H 0.97006 * 119.99739 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.46910 * 60.00313 * 9 7 2 20 20 H 1.08998 * 109.47181 * 299.99836 * 9 7 2 21 21 H 1.09002 * 109.47016 * 60.00008 * 11 10 9 22 22 H 1.08996 * 109.47200 * 299.99916 * 11 10 9 23 23 H 1.09002 * 109.47279 * 60.00081 * 12 11 10 24 24 H 1.08995 * 109.47424 * 300.00259 * 12 11 10 25 25 H 1.08000 * 125.96340 * 359.97438 * 14 13 12 26 26 H 1.08002 * 125.52127 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 16 2.4297 -3.8780 0.0005 11 6 1.3513 -5.3367 -0.0003 12 6 2.2081 -6.6043 0.0003 13 7 1.3373 -7.7823 0.0003 14 6 1.3550 -8.7972 -0.8810 15 7 0.4241 -9.6499 -0.5371 16 6 -0.2055 -9.2158 0.5540 17 7 0.3145 -8.0731 0.9178 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5570 -0.8897 20 1 0.6239 -2.5567 0.8903 21 1 0.7225 -5.3231 -0.8905 22 1 0.7219 -5.3237 0.8895 23 1 2.8367 -6.6176 0.8907 24 1 2.8380 -6.6175 -0.8891 25 1 2.0208 -8.8919 -1.7261 26 1 -1.0173 -9.7234 1.0537 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307353718.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:40 Heat of formation + Delta-G solvation = 78.609263 kcal Electronic energy + Delta-G solvation = -11233.346619 eV Core-core repulsion = 9054.103218 eV Total energy + Delta-G solvation = -2179.243401 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.06281 -35.01821 -33.21847 -31.25164 -30.15220 -28.62009 -24.51201 -23.01509 -22.02334 -21.31161 -17.44143 -16.61494 -16.00462 -15.23669 -15.07207 -14.61743 -14.39735 -14.06886 -12.89540 -12.60643 -12.48948 -12.39343 -12.01804 -11.36515 -10.91571 -10.77934 -10.24431 -9.98336 -9.84996 -9.81555 -9.56510 -9.04485 -8.67818 -6.86620 -6.25587 -4.30819 1.58071 1.98115 2.75716 2.91965 3.22376 3.28309 3.33030 3.68057 4.25245 4.30084 4.41673 4.83712 4.86376 5.11679 5.16713 5.25557 5.68716 5.98231 6.17104 6.38281 6.73326 6.99751 7.02726 7.68110 7.92263 8.02193 8.70869 9.32826 10.85653 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.089187 B = 0.005122 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.870272 B = 5465.784724 C = 5657.903271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.515 4.515 8 H 0.068 0.932 9 C 0.096 3.904 10 S -0.294 6.294 11 C -0.107 4.107 12 C 0.149 3.851 13 N -0.372 5.372 14 C 0.252 3.748 15 N -0.553 5.553 16 C 0.191 3.809 17 N -0.314 5.314 18 H 0.267 0.733 19 H 0.037 0.963 20 H 0.038 0.962 21 H 0.077 0.923 22 H 0.087 0.913 23 H 0.098 0.902 24 H 0.110 0.890 25 H 0.219 0.781 26 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 -13.572 -1.223 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.555 4.555 8 H 0.086 0.914 9 C -0.051 4.051 10 S -0.069 6.069 11 C -0.255 4.255 12 C 0.027 3.973 13 N -0.164 5.164 14 C -0.045 4.045 15 N -0.280 5.280 16 C -0.112 4.112 17 N -0.142 5.142 18 H 0.076 0.924 19 H 0.055 0.945 20 H 0.056 0.944 21 H 0.096 0.904 22 H 0.106 0.894 23 H 0.116 0.884 24 H 0.128 0.872 25 H 0.235 0.765 26 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.401 -13.247 -0.762 13.698 hybrid contribution -0.877 0.962 -0.180 1.314 sum 2.524 -12.285 -0.942 12.577 Atomic orbital electron populations 1.69954 1.06185 1.27489 1.49332 1.24973 0.94992 0.99351 0.94535 0.86321 0.79723 0.82061 0.78381 1.20297 1.20918 1.19498 1.20653 0.93488 0.88598 1.52723 0.91359 1.21081 0.93381 0.90305 1.00318 1.86512 1.20566 1.01660 1.98129 1.23430 1.01164 0.95271 1.05683 1.21637 0.90184 0.80195 1.05308 1.50731 1.26517 1.18542 1.20564 1.26088 0.97537 0.85008 0.95882 1.70527 1.10595 1.30904 1.16004 1.26005 1.00233 0.91612 0.93330 1.78088 1.03458 1.18013 1.14659 0.92384 0.94495 0.94388 0.90437 0.89391 0.88387 0.87227 0.76511 0.76828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 15 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 15 3 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.52 -14.27 9.13 -34.44 -0.31 -14.59 15 8 H 0.07 1.88 7.71 -52.48 -0.40 1.47 15 9 C 0.10 2.45 5.70 36.00 0.21 2.65 15 10 S -0.29 -5.99 21.66 -107.50 -2.33 -8.32 15 11 C -0.11 -1.73 6.15 37.16 0.23 -1.50 15 12 C 0.15 1.84 6.56 -4.04 -0.03 1.81 15 13 N -0.37 -4.80 3.69 -62.63 -0.23 -5.04 15 14 C 0.25 2.77 12.63 -90.65 -1.14 1.63 15 15 N -0.55 -7.12 11.19 -15.83 -0.18 -7.30 15 16 C 0.19 2.41 13.03 -91.81 -1.20 1.21 15 17 N -0.31 -4.61 12.56 29.29 0.37 -4.24 15 18 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 19 H 0.04 0.98 8.14 -51.92 -0.42 0.56 15 20 H 0.04 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.08 1.28 8.14 -51.92 -0.42 0.86 15 22 H 0.09 1.55 8.14 -51.93 -0.42 1.13 15 23 H 0.10 1.18 8.14 -51.93 -0.42 0.76 15 24 H 0.11 1.06 8.09 -51.93 -0.42 0.64 15 25 H 0.22 1.37 8.06 -52.49 -0.42 0.94 15 26 H 0.22 1.88 8.06 -52.49 -0.42 1.46 15 LS Contribution 252.83 15.07 3.81 3.81 Total: -1.00 -31.47 252.83 -8.11 -39.58 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -2.92 Total: -2.46 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.35 Total: -7.06 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.70 Total: -41.60 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -2.33 Total: -8.32 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.47 -8.11 -39.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307353718.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.191 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds