Wall clock time and date at job start Sun Mar 29 2020 21:44:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86797 * 120.00245 * 2 1
4 4 H 1.48499 * 109.46985 * 269.99442 * 3 2 1
5 5 H 1.48504 * 109.47094 * 29.99709 * 3 2 1
6 6 H 1.48501 * 109.47157 * 149.99534 * 3 2 1
7 7 C 1.37875 * 119.99691 * 179.97438 * 2 1 3
8 8 H 1.08006 * 119.99975 * 180.02562 * 7 2 1
9 9 C 1.50697 * 120.00059 * 0.02562 * 7 2 1
10 10 S 1.81407 * 109.46934 * 179.97438 * 9 7 2
11 11 C 1.81402 * 102.99847 * 180.02562 * 10 9 7
12 12 C 1.52999 * 109.47046 * 180.02562 * 11 10 9
13 13 N 1.46500 * 109.47084 * 179.97438 * 12 11 10
14 14 C 1.34429 * 126.81895 * 124.99739 * 13 12 11
15 15 N 1.30837 * 108.07952 * 180.02562 * 14 13 12
16 16 C 1.33246 * 109.82318 * 359.97438 * 15 14 13
17 17 N 1.30712 * 108.94935 * 0.27015 * 16 15 14
18 18 H 0.97006 * 119.99739 * 0.02562 * 1 2 3
19 19 H 1.09001 * 109.46910 * 60.00313 * 9 7 2
20 20 H 1.08998 * 109.47181 * 299.99836 * 9 7 2
21 21 H 1.09002 * 109.47016 * 60.00008 * 11 10 9
22 22 H 1.08996 * 109.47200 * 299.99916 * 11 10 9
23 23 H 1.09002 * 109.47279 * 60.00081 * 12 11 10
24 24 H 1.08995 * 109.47424 * 300.00259 * 12 11 10
25 25 H 1.08000 * 125.96340 * 359.97438 * 14 13 12
26 26 H 1.08002 * 125.52127 * 179.97438 * 16 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4968 2.0462 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4401 0.7001
7 6 2.0044 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2509 -2.4991 0.0005
10 16 2.4297 -3.8780 0.0005
11 6 1.3513 -5.3367 -0.0003
12 6 2.2081 -6.6043 0.0003
13 7 1.3373 -7.7823 0.0003
14 6 1.3550 -8.7972 -0.8810
15 7 0.4241 -9.6499 -0.5371
16 6 -0.2055 -9.2158 0.5540
17 7 0.3145 -8.0731 0.9178
18 1 -0.4850 0.8401 -0.0004
19 1 0.6246 -2.5570 -0.8897
20 1 0.6239 -2.5567 0.8903
21 1 0.7225 -5.3231 -0.8905
22 1 0.7219 -5.3237 0.8895
23 1 2.8367 -6.6176 0.8907
24 1 2.8380 -6.6175 -0.8891
25 1 2.0208 -8.8919 -1.7261
26 1 -1.0173 -9.7234 1.0537
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001307353718.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:44:40
Heat of formation + Delta-G solvation = 60.637036 kcal
Electronic energy + Delta-G solvation = -11234.125953 eV
Core-core repulsion = 9054.103218 eV
Total energy + Delta-G solvation = -2180.022735 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 213.063 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-42.99151 -36.06100 -35.32680 -32.20409 -31.27927 -30.71570 -25.85608 -24.84593
-22.91585 -22.34762 -18.68987 -18.39965 -17.31110 -16.82991 -16.23245 -16.01751
-15.65635 -14.99898 -14.61088 -14.38325 -14.22321 -13.89369 -13.26693 -12.77705
-12.62162 -12.40805 -12.07701 -11.63369 -11.03514 -10.85082 -10.81425 -10.77451
-10.70106 -8.55767 -8.36324 -6.50521 0.54893 0.77636 1.39941 1.41351
1.52829 1.61720 1.86943 2.00862 2.35211 2.98864 3.40695 3.52512
3.70229 4.00008 4.14128 4.24483 4.56922 4.71157 4.87143 4.89343
5.23998 5.47260 5.53762 5.82971 5.88081 6.57746 7.10308 7.18497
8.75919
Molecular weight = 213.06amu
Principal moments of inertia in cm(-1)
A = 0.089187 B = 0.005122 C = 0.004948
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 313.870272 B = 5465.784724 C = 5657.903271
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.927 5.927
2 C 0.013 3.987
3 Si 0.979 3.021
4 H -0.267 1.267
5 H -0.278 1.278
6 H -0.263 1.263
7 C -0.537 4.537
8 H 0.068 0.932
9 C 0.090 3.910
10 S -0.273 6.273
11 C -0.093 4.093
12 C 0.158 3.842
13 N -0.383 5.383
14 C 0.265 3.735
15 N -0.576 5.576
16 C 0.193 3.807
17 N -0.360 5.360
18 H 0.271 0.729
19 H 0.014 0.986
20 H 0.011 0.989
21 H 0.074 0.926
22 H 0.069 0.931
23 H 0.102 0.898
24 H 0.146 0.854
25 H 0.264 0.736
26 H 0.241 0.759
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.148 -14.217 -1.905 14.932
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.188 4.188
3 Si 0.802 3.198
4 H -0.193 1.193
5 H -0.203 1.203
6 H -0.187 1.187
7 C -0.575 4.575
8 H 0.086 0.914
9 C -0.058 4.058
10 S -0.047 6.047
11 C -0.242 4.242
12 C 0.036 3.964
13 N -0.175 5.175
14 C -0.031 4.031
15 N -0.304 5.304
16 C -0.110 4.110
17 N -0.188 5.188
18 H 0.079 0.921
19 H 0.033 0.967
20 H 0.029 0.971
21 H 0.093 0.907
22 H 0.088 0.912
23 H 0.120 0.880
24 H 0.163 0.837
25 H 0.280 0.720
26 H 0.257 0.743
Dipole moment (debyes) X Y Z Total
from point charges 4.833 -13.905 -1.443 14.791
hybrid contribution -1.363 1.017 0.014 1.701
sum 3.470 -12.888 -1.429 13.423
Atomic orbital electron populations
1.70070 1.07868 1.28669 1.50001 1.25966 0.95866 1.03280 0.93705
0.85230 0.78481 0.77224 0.78854 1.19259 1.20277 1.18665 1.20996
0.93623 0.89926 1.52998 0.91408 1.20779 0.94183 0.92936 0.97904
1.86126 1.19310 1.01210 1.98020 1.23411 1.00883 0.95223 1.04689
1.21592 0.89353 0.78110 1.07334 1.50691 1.26702 1.19044 1.21022
1.27028 0.96863 0.83484 0.95739 1.70584 1.11574 1.31824 1.16448
1.26600 1.00257 0.91004 0.93105 1.78047 1.04995 1.19369 1.16407
0.92054 0.96738 0.97091 0.90676 0.91226 0.88009 0.83670 0.72033
0.74286
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.58 13.29 21.45 0.28 -54.30 15
2 C 0.01 0.70 5.46 84.65 0.46 1.16 15
3 Si 0.98 43.00 29.54 68.60 2.03 45.03 15
4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 15
5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 15
6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 15
7 C -0.54 -30.15 9.13 25.60 0.23 -29.91 15
8 H 0.07 3.73 7.71 -2.91 -0.02 3.70 15
9 C 0.09 4.72 5.70 71.24 0.41 5.13 15
10 S -0.27 -10.98 21.66 -56.49 -1.22 -12.20 15
11 C -0.09 -2.94 6.15 71.98 0.44 -2.50 15
12 C 0.16 3.53 6.56 86.38 0.57 4.09 15
13 N -0.38 -9.10 3.69 -352.06 -1.30 -10.40 15
14 C 0.26 5.04 12.63 180.36 2.28 7.31 15
15 N -0.58 -13.63 11.19 -203.99 -2.28 -15.91 15
16 C 0.19 4.61 13.03 180.76 2.36 6.96 15
17 N -0.36 -10.24 12.56 -61.24 -0.77 -11.01 15
18 H 0.27 14.84 8.31 -92.70 -0.77 14.07 15
19 H 0.01 0.80 8.14 -2.39 -0.02 0.78 15
20 H 0.01 0.61 8.14 -2.39 -0.02 0.59 15
21 H 0.07 2.43 8.14 -2.39 -0.02 2.41 15
22 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15
23 H 0.10 2.22 8.14 -2.39 -0.02 2.21 15
24 H 0.15 2.21 8.09 -2.39 -0.02 2.19 15
25 H 0.26 2.08 8.06 -2.91 -0.02 2.06 15
26 H 0.24 3.89 8.06 -2.91 -0.02 3.87 15
Total: -1.00 -68.94 252.83 4.64 -64.29
By element:
Atomic # 1 Polarization: 1.09 SS G_CDS: 1.16 Total: 2.25 kcal
Atomic # 6 Polarization: -14.49 SS G_CDS: 6.74 Total: -7.75 kcal
Atomic # 7 Polarization: -87.55 SS G_CDS: -4.07 Total: -91.62 kcal
Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal
Atomic # 16 Polarization: -10.98 SS G_CDS: -1.22 Total: -12.20 kcal
Total: -68.94 4.64 -64.29 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001307353718.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 124.931 kcal
(2) G-P(sol) polarization free energy of solvation -68.937 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.994 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.294 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.637 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds