Wall clock time and date at job start Sun Mar 29 2020 21:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00245 * 2 1 4 4 H 1.48499 * 109.46985 * 269.99442 * 3 2 1 5 5 H 1.48504 * 109.47094 * 29.99709 * 3 2 1 6 6 H 1.48501 * 109.47157 * 149.99534 * 3 2 1 7 7 C 1.37875 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00059 * 0.02562 * 7 2 1 10 10 S 1.81407 * 109.46934 * 179.97438 * 9 7 2 11 11 C 1.81402 * 102.99847 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47046 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47084 * 179.97438 * 12 11 10 14 14 C 1.34429 * 126.81895 * 124.99739 * 13 12 11 15 15 N 1.30837 * 108.07952 * 180.02562 * 14 13 12 16 16 C 1.33246 * 109.82318 * 359.97438 * 15 14 13 17 17 N 1.30712 * 108.94935 * 0.27015 * 16 15 14 18 18 H 0.97006 * 119.99739 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.46910 * 60.00313 * 9 7 2 20 20 H 1.08998 * 109.47181 * 299.99836 * 9 7 2 21 21 H 1.09002 * 109.47016 * 60.00008 * 11 10 9 22 22 H 1.08996 * 109.47200 * 299.99916 * 11 10 9 23 23 H 1.09002 * 109.47279 * 60.00081 * 12 11 10 24 24 H 1.08995 * 109.47424 * 300.00259 * 12 11 10 25 25 H 1.08000 * 125.96340 * 359.97438 * 14 13 12 26 26 H 1.08002 * 125.52127 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 16 2.4297 -3.8780 0.0005 11 6 1.3513 -5.3367 -0.0003 12 6 2.2081 -6.6043 0.0003 13 7 1.3373 -7.7823 0.0003 14 6 1.3550 -8.7972 -0.8810 15 7 0.4241 -9.6499 -0.5371 16 6 -0.2055 -9.2158 0.5540 17 7 0.3145 -8.0731 0.9178 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5570 -0.8897 20 1 0.6239 -2.5567 0.8903 21 1 0.7225 -5.3231 -0.8905 22 1 0.7219 -5.3237 0.8895 23 1 2.8367 -6.6176 0.8907 24 1 2.8380 -6.6175 -0.8891 25 1 2.0208 -8.8919 -1.7261 26 1 -1.0173 -9.7234 1.0537 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307353718.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:40 Heat of formation + Delta-G solvation = 60.637036 kcal Electronic energy + Delta-G solvation = -11234.125953 eV Core-core repulsion = 9054.103218 eV Total energy + Delta-G solvation = -2180.022735 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.99151 -36.06100 -35.32680 -32.20409 -31.27927 -30.71570 -25.85608 -24.84593 -22.91585 -22.34762 -18.68987 -18.39965 -17.31110 -16.82991 -16.23245 -16.01751 -15.65635 -14.99898 -14.61088 -14.38325 -14.22321 -13.89369 -13.26693 -12.77705 -12.62162 -12.40805 -12.07701 -11.63369 -11.03514 -10.85082 -10.81425 -10.77451 -10.70106 -8.55767 -8.36324 -6.50521 0.54893 0.77636 1.39941 1.41351 1.52829 1.61720 1.86943 2.00862 2.35211 2.98864 3.40695 3.52512 3.70229 4.00008 4.14128 4.24483 4.56922 4.71157 4.87143 4.89343 5.23998 5.47260 5.53762 5.82971 5.88081 6.57746 7.10308 7.18497 8.75919 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.089187 B = 0.005122 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.870272 B = 5465.784724 C = 5657.903271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.090 3.910 10 S -0.273 6.273 11 C -0.093 4.093 12 C 0.158 3.842 13 N -0.383 5.383 14 C 0.265 3.735 15 N -0.576 5.576 16 C 0.193 3.807 17 N -0.360 5.360 18 H 0.271 0.729 19 H 0.014 0.986 20 H 0.011 0.989 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.102 0.898 24 H 0.146 0.854 25 H 0.264 0.736 26 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.148 -14.217 -1.905 14.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.802 3.198 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.575 4.575 8 H 0.086 0.914 9 C -0.058 4.058 10 S -0.047 6.047 11 C -0.242 4.242 12 C 0.036 3.964 13 N -0.175 5.175 14 C -0.031 4.031 15 N -0.304 5.304 16 C -0.110 4.110 17 N -0.188 5.188 18 H 0.079 0.921 19 H 0.033 0.967 20 H 0.029 0.971 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.120 0.880 24 H 0.163 0.837 25 H 0.280 0.720 26 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.833 -13.905 -1.443 14.791 hybrid contribution -1.363 1.017 0.014 1.701 sum 3.470 -12.888 -1.429 13.423 Atomic orbital electron populations 1.70070 1.07868 1.28669 1.50001 1.25966 0.95866 1.03280 0.93705 0.85230 0.78481 0.77224 0.78854 1.19259 1.20277 1.18665 1.20996 0.93623 0.89926 1.52998 0.91408 1.20779 0.94183 0.92936 0.97904 1.86126 1.19310 1.01210 1.98020 1.23411 1.00883 0.95223 1.04689 1.21592 0.89353 0.78110 1.07334 1.50691 1.26702 1.19044 1.21022 1.27028 0.96863 0.83484 0.95739 1.70584 1.11574 1.31824 1.16448 1.26600 1.00257 0.91004 0.93105 1.78047 1.04995 1.19369 1.16407 0.92054 0.96738 0.97091 0.90676 0.91226 0.88009 0.83670 0.72033 0.74286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.58 13.29 21.45 0.28 -54.30 15 2 C 0.01 0.70 5.46 84.65 0.46 1.16 15 3 Si 0.98 43.00 29.54 68.60 2.03 45.03 15 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 15 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 15 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 15 7 C -0.54 -30.15 9.13 25.60 0.23 -29.91 15 8 H 0.07 3.73 7.71 -2.91 -0.02 3.70 15 9 C 0.09 4.72 5.70 71.24 0.41 5.13 15 10 S -0.27 -10.98 21.66 -56.49 -1.22 -12.20 15 11 C -0.09 -2.94 6.15 71.98 0.44 -2.50 15 12 C 0.16 3.53 6.56 86.38 0.57 4.09 15 13 N -0.38 -9.10 3.69 -352.06 -1.30 -10.40 15 14 C 0.26 5.04 12.63 180.36 2.28 7.31 15 15 N -0.58 -13.63 11.19 -203.99 -2.28 -15.91 15 16 C 0.19 4.61 13.03 180.76 2.36 6.96 15 17 N -0.36 -10.24 12.56 -61.24 -0.77 -11.01 15 18 H 0.27 14.84 8.31 -92.70 -0.77 14.07 15 19 H 0.01 0.80 8.14 -2.39 -0.02 0.78 15 20 H 0.01 0.61 8.14 -2.39 -0.02 0.59 15 21 H 0.07 2.43 8.14 -2.39 -0.02 2.41 15 22 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 23 H 0.10 2.22 8.14 -2.39 -0.02 2.21 15 24 H 0.15 2.21 8.09 -2.39 -0.02 2.19 15 25 H 0.26 2.08 8.06 -2.91 -0.02 2.06 15 26 H 0.24 3.89 8.06 -2.91 -0.02 3.87 15 Total: -1.00 -68.94 252.83 4.64 -64.29 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 1.16 Total: 2.25 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 6.74 Total: -7.75 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -4.07 Total: -91.62 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -10.98 SS G_CDS: -1.22 Total: -12.20 kcal Total: -68.94 4.64 -64.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307353718.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.931 kcal (2) G-P(sol) polarization free energy of solvation -68.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds